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Iron in PDB 9fu4: Wobbly Codh/Acs in the As Isolated State

Enzymatic activity of Wobbly Codh/Acs in the As Isolated State

All present enzymatic activity of Wobbly Codh/Acs in the As Isolated State:
1.2.7.4; 2.3.1.169;

Other elements in 9fu4:

The structure of Wobbly Codh/Acs in the As Isolated State also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Wobbly Codh/Acs in the As Isolated State (pdb code 9fu4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the Wobbly Codh/Acs in the As Isolated State, PDB code: 9fu4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 10 in 9fu4

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Iron binding site 1 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:8.9
occ:0.26
 FE1 A:RQM701 0.0 8.9 0.3
S3 A:RQM701 2.3 11.0 0.4
SG A:CYS354 2.3 11.4 1.0
S4 A:RQM701 2.4 11.8 0.5
S2 A:RQM701 2.4 10.5 0.4
FE3 A:RQM701 2.6 8.9 0.3
FE4 A:RQM701 2.7 11.6 0.4
CB A:CYS354 3.2 7.6 1.0
FE2 A:RQM701 3.2 10.5 0.2
NI A:RQM701 3.3 9.6 0.1
S1 A:RQM701 3.7 12.2 0.5
NZ A:LYS583 4.1 13.5 1.0
NE2 A:HIS282 4.1 12.7 1.0
CE1 A:HIS282 4.2 10.8 1.0
SG A:CYS467 4.5 14.7 1.0
OG A:SER581 4.5 8.7 1.0
CE A:LYS583 4.6 10.4 1.0
CA A:CYS354 4.6 9.0 1.0
CB A:CYS467 4.7 10.1 1.0
CE A:MET580 4.8 6.0 1.0
O A:HOH1024 4.9 14.0 1.0
CB A:SER581 4.9 3.7 1.0
SG A:CYS497 4.9 23.4 1.0

Iron binding site 2 out of 10 in 9fu4

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Iron binding site 2 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:10.5
occ:0.16
 FE2 A:RQM701 0.0 10.5 0.2
NE2 A:HIS282 2.1 12.7 1.0
SG A:CYS316 2.3 20.1 1.0
S3 A:RQM701 2.3 11.0 0.4
NI A:RQM701 2.6 9.6 0.1
CD2 A:HIS282 3.0 7.4 1.0
CE1 A:HIS282 3.1 10.8 1.0
FE1 A:RQM701 3.2 8.9 0.3
SG A:CYS546 3.2 24.6 1.0
CB A:CYS316 3.5 10.6 1.0
S4 A:RQM701 3.5 11.8 0.5
FE4 A:RQM701 3.9 11.6 0.4
CB A:CYS546 3.9 10.6 1.0
O A:HOH1013 4.0 13.5 1.0
S1 A:RQM701 4.1 12.2 0.5
CE A:LYS583 4.1 10.4 1.0
CG A:HIS282 4.1 9.6 1.0
ND1 A:HIS282 4.1 8.2 1.0
SG A:CYS315 4.5 17.1 0.5
FE3 A:RQM701 4.5 8.9 0.3
SG A:CYS354 4.5 11.4 1.0
N A:CYS316 4.6 7.5 1.0
CA A:CYS316 4.6 9.5 1.0
NZ A:LYS583 4.6 13.5 1.0
O A:HOH989 4.7 9.7 1.0
N A:CYS546 4.9 4.2 1.0

Iron binding site 3 out of 10 in 9fu4

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Iron binding site 3 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:8.9
occ:0.35
 FE3 A:RQM701 0.0 8.9 0.3
S4 A:RQM701 2.2 11.8 0.5
S1 A:RQM701 2.3 12.2 0.5
SG A:CYS467 2.3 14.7 1.0
S2 A:RQM701 2.4 10.5 0.4
FE1 A:RQM701 2.6 8.9 0.3
FE4 A:RQM701 2.7 11.6 0.4
CB A:CYS467 2.7 10.1 1.0
NI A:RQM701 2.8 9.6 0.1
O A:HOH1024 3.3 14.0 1.0
CA A:CYS467 3.3 6.0 1.0
N A:CYS467 3.6 10.4 1.0
OG A:SER581 4.0 8.7 1.0
S3 A:RQM701 4.0 11.0 0.4
C A:GLY466 4.0 9.0 1.0
O A:GLY466 4.4 12.3 1.0
SG A:CYS497 4.5 23.4 1.0
SG A:CYS354 4.5 11.4 1.0
FE2 A:RQM701 4.5 10.5 0.2
CA A:GLY466 4.6 10.1 1.0
CB A:SER581 4.6 3.7 1.0
SG A:CYS546 4.7 24.6 1.0
CE A:MET580 4.7 6.0 1.0
C A:CYS467 4.8 8.6 1.0

Iron binding site 4 out of 10 in 9fu4

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Iron binding site 4 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:11.6
occ:0.38
 FE4 A:RQM701 0.0 11.6 0.4
S2 A:RQM701 2.3 10.5 0.4
S1 A:RQM701 2.3 12.2 0.5
S3 A:RQM701 2.3 11.0 0.4
SG A:CYS497 2.3 23.4 1.0
FE3 A:RQM701 2.7 8.9 0.3
FE1 A:RQM701 2.7 8.9 0.3
O A:HOH1013 3.1 13.5 1.0
NI A:RQM701 3.6 9.6 0.1
CB A:CYS497 3.7 8.6 1.0
FE2 A:RQM701 3.9 10.5 0.2
S4 A:RQM701 4.0 11.8 0.5
CB A:CYS467 4.1 10.1 1.0
CA A:CYS467 4.1 6.0 1.0
N A:CYS497 4.2 6.3 1.0
CB A:PHE333 4.4 7.7 1.0
CA A:CYS497 4.5 9.0 1.0
O A:GLY466 4.7 12.3 1.0
SG A:CYS315 4.7 16.1 0.5
SG A:CYS467 4.7 14.7 1.0
SG A:CYS546 4.8 24.6 1.0
N A:CYS467 4.8 10.4 1.0
SG A:CYS354 4.9 11.4 1.0
SG A:CYS316 4.9 20.1 1.0
C A:GLY466 4.9 9.0 1.0

Iron binding site 5 out of 10 in 9fu4

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Iron binding site 5 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe702

b:12.5
occ:1.00
 FE2 A:SF4702 0.0 12.5 1.0
SG A:CYS67 2.3 5.3 1.0
S4 A:SF4702 2.3 3.6 1.0
S1 A:SF4702 2.3 6.1 1.0
FE3 A:SF4702 2.7 14.7 1.0
CB A:CYS67 3.1 1.6 1.0
CA A:CYS67 4.6 2.5 1.0
SG A:CYS59 4.8 0.1 1.0
N A:GLY62 4.9 1.1 1.0
CD A:ARG69 4.9 1.7 1.0
CB A:PHE61 5.0 1.9 1.0

Iron binding site 6 out of 10 in 9fu4

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Iron binding site 6 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe702

b:14.7
occ:1.00
 FE3 A:SF4702 0.0 14.7 1.0
SG A:CYS59 2.3 0.1 1.0
S1 A:SF4702 2.3 6.1 1.0
S4 A:SF4702 2.3 3.6 1.0
FE2 A:SF4702 2.7 12.5 1.0
CB A:CYS59 3.3 1.2 1.0
N A:GLY62 4.1 1.1 1.0
CB A:PHE61 4.2 1.9 1.0
CA A:GLY62 4.7 0.1 1.0
CA A:CYS59 4.7 0.8 1.0
SG A:CYS67 4.8 5.3 1.0
CD2 A:PHE61 4.9 3.9 1.0
C A:PHE61 4.9 2.7 1.0
CB A:CYS67 5.0 1.6 1.0
CA A:PHE61 5.0 1.3 1.0

Iron binding site 7 out of 10 in 9fu4

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Iron binding site 7 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:6.6
occ:1.00
 FE1 A:SF4703 0.0 6.6 1.0
SG A:CYS71 2.3 5.1 1.0
S2 A:SF4703 2.3 3.4 1.0
S3 A:SF4703 2.3 4.2 1.0
S4 A:SF4703 2.3 0.0 1.0
FE3 A:SF4703 2.7 15.4 1.0
FE4 A:SF4703 2.7 13.8 1.0
FE2 A:SF4703 2.7 15.2 1.0
CB A:CYS71 3.2 0.0 1.0
N A:CYS71 3.6 1.1 1.0
CA A:CYS71 3.8 2.3 1.0
S1 A:SF4703 3.9 3.1 1.0
O A:CYS71 4.0 4.5 1.0
C A:CYS71 4.1 2.5 1.0
C A:PHE70 4.4 3.1 1.0
CG1 A:ILE220 4.4 3.4 1.0
N A:GLY74 4.5 4.7 1.0
CB A:GLN73 4.7 1.7 1.0
N A:PHE70 4.7 3.7 1.0
SG A:CYS89 4.8 3.4 1.0
SG A:CYS76 4.8 4.9 1.0
SG A:CYS68 4.8 4.6 1.0
N A:GLN73 4.9 2.1 1.0
CA A:GLY74 5.0 0.6 1.0
CA A:PHE70 5.0 4.0 1.0

Iron binding site 8 out of 10 in 9fu4

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Iron binding site 8 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:15.2
occ:1.00
 FE2 A:SF4703 0.0 15.2 1.0
S4 A:SF4703 2.3 0.0 1.0
S1 A:SF4703 2.3 3.1 1.0
S3 A:SF4703 2.3 4.2 1.0
SG A:CYS89 2.3 3.4 1.0
FE4 A:SF4703 2.7 13.8 1.0
FE1 A:SF4703 2.7 6.6 1.0
FE3 A:SF4703 2.7 15.4 1.0
CB A:CYS89 3.4 0.3 1.0
S2 A:SF4703 3.9 3.4 1.0
N A:CYS89 3.9 1.6 1.0
CA A:CYS89 4.3 3.4 1.0
O A:HOH984 4.3 5.8 1.0
CB A:ALA91 4.4 2.9 1.0
NH1 A:ARG99 4.4 4.1 1.0
CG1 A:ILE220 4.4 3.4 1.0
SG A:CYS71 4.6 5.1 1.0
N A:ILE88 4.7 5.6 1.0
SG A:CYS68 4.7 4.6 1.0
SG A:CYS76 4.8 4.9 1.0
CA A:GLY87 5.0 2.7 1.0

Iron binding site 9 out of 10 in 9fu4

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Iron binding site 9 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:15.4
occ:1.00
 FE3 A:SF4703 0.0 15.4 1.0
SG A:CYS76 2.3 4.9 1.0
S2 A:SF4703 2.3 3.4 1.0
S4 A:SF4703 2.3 0.0 1.0
S1 A:SF4703 2.3 3.1 1.0
FE4 A:SF4703 2.7 13.8 1.0
FE1 A:SF4703 2.7 6.6 1.0
FE2 A:SF4703 2.7 15.2 1.0
CB A:CYS76 3.2 0.0 1.0
S3 A:SF4703 3.9 4.2 1.0
N A:ILE88 4.1 5.6 1.0
N A:CYS76 4.4 0.1 1.0
CA A:CYS76 4.4 5.0 1.0
CA A:GLY74 4.5 0.6 1.0
CB A:ILE88 4.5 2.2 1.0
O A:CYS68 4.6 5.7 1.0
N A:GLY74 4.6 4.7 1.0
CA A:GLY87 4.7 2.7 1.0
SG A:CYS71 4.7 5.1 1.0
SG A:CYS68 4.7 4.6 1.0
SG A:CYS89 4.7 3.4 1.0
CB A:CYS68 4.8 0.7 1.0
N A:CYS89 4.8 1.6 1.0
C A:GLY87 4.8 3.3 1.0
CA A:ILE88 4.9 1.2 1.0
CG1 A:ILE88 4.9 3.4 1.0

Iron binding site 10 out of 10 in 9fu4

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Iron binding site 10 out of 10 in the Wobbly Codh/Acs in the As Isolated State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Wobbly Codh/Acs in the As Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:13.8
occ:1.00
 FE4 A:SF4703 0.0 13.8 1.0
SG A:CYS68 2.3 4.6 1.0
S3 A:SF4703 2.3 4.2 1.0
S1 A:SF4703 2.3 3.1 1.0
S2 A:SF4703 2.3 3.4 1.0
FE3 A:SF4703 2.7 15.4 1.0
FE2 A:SF4703 2.7 15.2 1.0
FE1 A:SF4703 2.7 6.6 1.0
CB A:CYS68 3.2 0.7 1.0
NH1 A:ARG99 3.8 4.1 1.0
S4 A:SF4703 3.9 0.0 1.0
N A:PHE70 3.9 3.7 1.0
C A:CYS68 4.1 0.0 1.0
O A:CYS68 4.1 5.7 1.0
CA A:CYS68 4.2 4.2 1.0
CB A:PHE70 4.3 1.3 1.0
N A:ARG69 4.5 3.9 1.0
N A:CYS71 4.5 1.1 1.0
CA A:PHE70 4.5 4.0 1.0
SG A:CYS76 4.7 4.9 1.0
C A:PHE70 4.8 3.1 1.0
C A:ARG69 4.8 4.8 1.0
CB A:CYS76 4.9 0.0 1.0
SG A:CYS89 4.9 3.4 1.0
CZ A:ARG99 4.9 2.3 1.0
SG A:CYS71 5.0 5.1 1.0
CA A:ARG69 5.0 3.0 1.0

Reference:

J.Ruickoldt, P.Wendler, H.Dobbek. The Codh/Acs Complex Caught in Action To Be Published.
Page generated: Fri Aug 8 05:58:30 2025

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