Iron in PDB 9gm3: Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
Enzymatic activity of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
All present enzymatic activity of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla:
1.8.98.7;
Protein crystallography data
The structure of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla, PDB code: 9gm3
was solved by
E.De La Mora,
J.Ruel,
A.Usclat,
L.Martin,
P.Amara,
B.Morinaka,
Y.Nicolet,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
67.06 /
1.65
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
151.664,
62.73,
116.549,
90,
117.84,
90
|
R / Rfree (%)
|
19.3 /
21.3
|
Other elements in 9gm3:
The structure of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
(pdb code 9gm3). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla, PDB code: 9gm3:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 1 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:21.3
occ:1.00
|
FE1
|
A:SF41001
|
0.0
|
21.3
|
1.0
|
OXT
|
A:SAH1006
|
2.3
|
20.5
|
1.0
|
N
|
A:SAH1006
|
2.3
|
20.4
|
1.0
|
S4
|
A:SF41001
|
2.4
|
21.1
|
1.0
|
S3
|
A:SF41001
|
2.4
|
21.4
|
1.0
|
S2
|
A:SF41001
|
2.4
|
21.6
|
1.0
|
FE3
|
A:SF41001
|
2.8
|
21.5
|
1.0
|
FE2
|
A:SF41001
|
2.9
|
20.8
|
1.0
|
FE4
|
A:SF41001
|
2.9
|
20.4
|
1.0
|
C
|
A:SAH1006
|
3.0
|
20.0
|
1.0
|
CA
|
A:SAH1006
|
3.1
|
19.5
|
1.0
|
SD
|
A:SAH1006
|
3.3
|
19.2
|
1.0
|
CG
|
A:SAH1006
|
3.6
|
17.9
|
1.0
|
CB
|
A:SAH1006
|
3.9
|
18.1
|
1.0
|
S1
|
A:SF41001
|
4.1
|
21.0
|
1.0
|
NH2
|
A:ARG141
|
4.1
|
23.6
|
1.0
|
O
|
A:SAH1006
|
4.2
|
21.1
|
1.0
|
SG
|
A:CYS18
|
4.5
|
19.2
|
1.0
|
CB
|
A:ASN107
|
4.7
|
18.5
|
1.0
|
O
|
A:GLY73
|
4.7
|
19.9
|
1.0
|
C2'
|
A:SAH1006
|
4.8
|
19.7
|
1.0
|
C3'
|
A:SAH1006
|
4.9
|
19.8
|
1.0
|
C5'
|
A:SAH1006
|
4.9
|
19.6
|
1.0
|
NH1
|
A:ARG141
|
4.9
|
22.9
|
1.0
|
SG
|
A:CYS22
|
4.9
|
20.3
|
1.0
|
ND2
|
A:ASN107
|
5.0
|
20.8
|
1.0
|
CZ
|
A:ARG141
|
5.0
|
24.7
|
1.0
|
|
Iron binding site 2 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 2 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:20.8
occ:1.00
|
FE2
|
A:SF41001
|
0.0
|
20.8
|
1.0
|
SG
|
A:CYS22
|
2.3
|
20.3
|
1.0
|
S4
|
A:SF41001
|
2.3
|
21.1
|
1.0
|
S3
|
A:SF41001
|
2.3
|
21.4
|
1.0
|
S1
|
A:SF41001
|
2.4
|
21.0
|
1.0
|
FE3
|
A:SF41001
|
2.8
|
21.5
|
1.0
|
FE4
|
A:SF41001
|
2.8
|
20.4
|
1.0
|
FE1
|
A:SF41001
|
2.9
|
21.3
|
1.0
|
CB
|
A:CYS22
|
3.1
|
18.3
|
1.0
|
NH2
|
A:ARG141
|
3.9
|
23.6
|
1.0
|
N
|
A:CYS22
|
3.9
|
19.8
|
1.0
|
S2
|
A:SF41001
|
4.0
|
21.6
|
1.0
|
CA
|
A:CYS22
|
4.1
|
20.3
|
1.0
|
NH1
|
A:ARG141
|
4.1
|
22.9
|
1.0
|
CZ
|
A:ARG141
|
4.2
|
24.7
|
1.0
|
CB
|
A:LEU20
|
4.3
|
19.6
|
1.0
|
OXT
|
A:SAH1006
|
4.4
|
20.5
|
1.0
|
SG
|
A:CYS18
|
4.7
|
19.2
|
1.0
|
CB
|
A:CYS25
|
4.7
|
18.2
|
1.0
|
SG
|
A:CYS25
|
4.8
|
20.9
|
1.0
|
CD1
|
A:LEU20
|
4.9
|
20.9
|
1.0
|
N
|
A:SAH1006
|
4.9
|
20.4
|
1.0
|
C
|
A:LEU20
|
5.0
|
20.4
|
1.0
|
|
Iron binding site 3 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 3 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:21.5
occ:1.00
|
FE3
|
A:SF41001
|
0.0
|
21.5
|
1.0
|
S2
|
A:SF41001
|
2.3
|
21.6
|
1.0
|
SG
|
A:CYS18
|
2.3
|
19.2
|
1.0
|
S1
|
A:SF41001
|
2.3
|
21.0
|
1.0
|
S4
|
A:SF41001
|
2.3
|
21.1
|
1.0
|
FE4
|
A:SF41001
|
2.7
|
20.4
|
1.0
|
FE2
|
A:SF41001
|
2.8
|
20.8
|
1.0
|
FE1
|
A:SF41001
|
2.8
|
21.3
|
1.0
|
CB
|
A:CYS18
|
3.3
|
20.4
|
1.0
|
N
|
A:SAH1006
|
3.8
|
20.4
|
1.0
|
S3
|
A:SF41001
|
3.9
|
21.4
|
1.0
|
CE2
|
A:TYR28
|
4.1
|
23.8
|
1.0
|
O
|
A:LEU20
|
4.2
|
21.2
|
1.0
|
O
|
A:HOH1120
|
4.5
|
20.8
|
1.0
|
CB
|
A:LEU20
|
4.5
|
19.6
|
1.0
|
ND2
|
A:ASN107
|
4.6
|
20.8
|
1.0
|
C
|
A:LEU20
|
4.6
|
20.4
|
1.0
|
CD2
|
A:TYR28
|
4.7
|
22.8
|
1.0
|
CA
|
A:CYS18
|
4.7
|
20.9
|
1.0
|
N
|
A:LEU20
|
4.8
|
20.7
|
1.0
|
SG
|
A:CYS22
|
4.8
|
20.3
|
1.0
|
SG
|
A:CYS25
|
4.8
|
20.9
|
1.0
|
CA
|
A:LEU20
|
4.8
|
19.9
|
1.0
|
OXT
|
A:SAH1006
|
4.8
|
20.5
|
1.0
|
C
|
A:GLY73
|
5.0
|
20.2
|
1.0
|
|
Iron binding site 4 out
of 16 in 9gm3
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Iron Binding Sites List in 9gm3
Iron binding site 4 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:20.4
occ:1.00
|
FE4
|
A:SF41001
|
0.0
|
20.4
|
1.0
|
SG
|
A:CYS25
|
2.3
|
20.9
|
1.0
|
S2
|
A:SF41001
|
2.3
|
21.6
|
1.0
|
S3
|
A:SF41001
|
2.3
|
21.4
|
1.0
|
S1
|
A:SF41001
|
2.3
|
21.0
|
1.0
|
FE3
|
A:SF41001
|
2.7
|
21.5
|
1.0
|
FE2
|
A:SF41001
|
2.8
|
20.8
|
1.0
|
FE1
|
A:SF41001
|
2.9
|
21.3
|
1.0
|
CB
|
A:CYS25
|
3.1
|
18.2
|
1.0
|
S4
|
A:SF41001
|
4.0
|
21.1
|
1.0
|
CD2
|
A:TYR28
|
4.0
|
22.8
|
1.0
|
CE2
|
A:TYR28
|
4.1
|
23.8
|
1.0
|
CA
|
A:CYS25
|
4.3
|
19.1
|
1.0
|
CE
|
A:MET27
|
4.3
|
27.3
|
0.6
|
CE
|
A:MET27
|
4.4
|
27.5
|
0.4
|
SD
|
A:SAH1006
|
4.4
|
19.2
|
1.0
|
CB
|
A:CYS22
|
4.7
|
18.3
|
1.0
|
N
|
A:SAH1006
|
4.7
|
20.4
|
1.0
|
SG
|
A:CYS22
|
4.8
|
20.3
|
1.0
|
C8
|
A:SAH1006
|
4.9
|
18.2
|
1.0
|
SG
|
A:CYS18
|
5.0
|
19.2
|
1.0
|
OXT
|
A:SAH1006
|
5.0
|
20.5
|
1.0
|
|
Iron binding site 5 out
of 16 in 9gm3
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Iron Binding Sites List in 9gm3
Iron binding site 5 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:25.2
occ:1.00
|
FE1
|
A:SF41002
|
0.0
|
25.2
|
1.0
|
SG
|
A:CYS327
|
2.3
|
24.7
|
1.0
|
S3
|
A:SF41002
|
2.3
|
26.3
|
1.0
|
S4
|
A:SF41002
|
2.3
|
25.1
|
1.0
|
S2
|
A:SF41002
|
2.3
|
26.8
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
24.2
|
1.0
|
FE2
|
A:SF41002
|
2.8
|
23.8
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
23.7
|
1.0
|
CB
|
A:CYS327
|
3.0
|
25.4
|
1.0
|
S1
|
A:SF41002
|
4.0
|
24.3
|
1.0
|
CG2
|
A:VAL329
|
4.1
|
30.1
|
1.0
|
CA
|
A:CYS327
|
4.5
|
28.0
|
1.0
|
O
|
A:HOH1344
|
4.6
|
54.4
|
1.0
|
CA
|
A:CYS324
|
4.6
|
26.6
|
1.0
|
N
|
A:VAL330
|
4.7
|
28.4
|
1.0
|
SG
|
A:CYS354
|
4.7
|
24.6
|
1.0
|
SG
|
A:CYS333
|
4.8
|
21.1
|
1.0
|
CB
|
A:CYS333
|
4.8
|
21.8
|
1.0
|
SG
|
A:CYS324
|
4.8
|
24.6
|
1.0
|
CD1
|
A:PHE358
|
4.9
|
28.4
|
1.0
|
O
|
A:HOH1354
|
4.9
|
48.4
|
1.0
|
CA
|
A:VAL330
|
4.9
|
28.0
|
1.0
|
C
|
A:VAL329
|
4.9
|
28.7
|
1.0
|
CB
|
A:CYS324
|
5.0
|
25.1
|
1.0
|
O
|
A:CYS324
|
5.0
|
25.4
|
1.0
|
|
Iron binding site 6 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 6 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:23.8
occ:1.00
|
FE2
|
A:SF41002
|
0.0
|
23.8
|
1.0
|
SG
|
A:CYS333
|
2.3
|
21.1
|
1.0
|
S4
|
A:SF41002
|
2.3
|
25.1
|
1.0
|
S3
|
A:SF41002
|
2.3
|
26.3
|
1.0
|
S1
|
A:SF41002
|
2.4
|
24.3
|
1.0
|
FE1
|
A:SF41002
|
2.8
|
25.2
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
23.7
|
1.0
|
FE4
|
A:SF41002
|
2.8
|
24.2
|
1.0
|
CB
|
A:CYS333
|
3.1
|
21.8
|
1.0
|
S2
|
A:SF41002
|
4.0
|
26.8
|
1.0
|
N
|
A:GLY335
|
4.0
|
22.2
|
1.0
|
CA
|
A:GLY335
|
4.2
|
23.1
|
1.0
|
CA
|
A:CYS333
|
4.5
|
23.4
|
1.0
|
CB
|
A:MET357
|
4.5
|
21.3
|
1.0
|
C
|
A:GLY335
|
4.6
|
23.9
|
1.0
|
CG2
|
A:THR351
|
4.7
|
18.2
|
1.0
|
C
|
A:CYS333
|
4.7
|
24.2
|
1.0
|
N
|
A:GLY336
|
4.8
|
23.5
|
1.0
|
CG2
|
A:VAL329
|
4.8
|
30.1
|
1.0
|
SG
|
A:CYS324
|
4.8
|
24.6
|
1.0
|
N
|
A:GLY334
|
4.8
|
24.3
|
1.0
|
SG
|
A:CYS327
|
4.9
|
24.7
|
1.0
|
SG
|
A:CYS354
|
4.9
|
24.6
|
1.0
|
CA
|
A:CYS354
|
4.9
|
22.1
|
1.0
|
|
Iron binding site 7 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 7 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:23.7
occ:1.00
|
FE3
|
A:SF41002
|
0.0
|
23.7
|
1.0
|
SG
|
A:CYS324
|
2.3
|
24.6
|
1.0
|
S1
|
A:SF41002
|
2.3
|
24.3
|
1.0
|
S2
|
A:SF41002
|
2.3
|
26.8
|
1.0
|
S4
|
A:SF41002
|
2.4
|
25.1
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
24.2
|
1.0
|
FE1
|
A:SF41002
|
2.8
|
25.2
|
1.0
|
FE2
|
A:SF41002
|
2.8
|
23.8
|
1.0
|
CB
|
A:CYS324
|
3.2
|
25.1
|
1.0
|
CA
|
A:CYS324
|
3.5
|
26.6
|
1.0
|
S3
|
A:SF41002
|
3.9
|
26.3
|
1.0
|
CG
|
A:GLN350
|
4.1
|
28.3
|
1.0
|
N
|
A:CYS324
|
4.1
|
27.6
|
1.0
|
CA
|
A:GLY335
|
4.2
|
23.1
|
1.0
|
CB
|
A:GLN350
|
4.4
|
22.5
|
1.0
|
N
|
A:GLY335
|
4.5
|
22.2
|
1.0
|
CA
|
A:GLN350
|
4.6
|
21.1
|
1.0
|
SG
|
A:CYS354
|
4.7
|
24.6
|
1.0
|
CB
|
A:CYS327
|
4.7
|
25.4
|
1.0
|
SG
|
A:CYS333
|
4.8
|
21.1
|
1.0
|
C
|
A:CYS324
|
4.8
|
26.8
|
1.0
|
SG
|
A:CYS327
|
4.8
|
24.7
|
1.0
|
C
|
A:THR323
|
4.9
|
29.7
|
1.0
|
O
|
A:CYS324
|
5.0
|
25.4
|
1.0
|
|
Iron binding site 8 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 8 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:24.2
occ:1.00
|
FE4
|
A:SF41002
|
0.0
|
24.2
|
1.0
|
SG
|
A:CYS354
|
2.2
|
24.6
|
1.0
|
S2
|
A:SF41002
|
2.3
|
26.8
|
1.0
|
S3
|
A:SF41002
|
2.3
|
26.3
|
1.0
|
S1
|
A:SF41002
|
2.3
|
24.3
|
1.0
|
FE3
|
A:SF41002
|
2.7
|
23.7
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
25.2
|
1.0
|
FE2
|
A:SF41002
|
2.8
|
23.8
|
1.0
|
CB
|
A:CYS354
|
3.2
|
22.0
|
1.0
|
CA
|
A:CYS354
|
3.7
|
22.1
|
1.0
|
S4
|
A:SF41002
|
3.9
|
25.1
|
1.0
|
O
|
A:CYS354
|
4.0
|
22.7
|
1.0
|
C
|
A:CYS354
|
4.2
|
22.6
|
1.0
|
NE2
|
A:GLN350
|
4.2
|
37.7
|
1.0
|
CG
|
A:GLN350
|
4.4
|
28.3
|
1.0
|
CB
|
A:GLN350
|
4.5
|
22.5
|
1.0
|
SG
|
A:CYS327
|
4.7
|
24.7
|
1.0
|
SG
|
A:CYS324
|
4.8
|
24.6
|
1.0
|
O
|
A:HOH1354
|
4.8
|
48.4
|
1.0
|
CD
|
A:GLN350
|
4.8
|
36.3
|
1.0
|
SG
|
A:CYS333
|
4.9
|
21.1
|
1.0
|
N
|
A:CYS354
|
5.0
|
20.8
|
1.0
|
|
Iron binding site 9 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 9 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1001
b:30.0
occ:1.00
|
FE1
|
C:SF41001
|
0.0
|
30.0
|
1.0
|
SG
|
C:CYS22
|
2.2
|
29.0
|
1.0
|
S3
|
C:SF41001
|
2.3
|
29.2
|
1.0
|
S4
|
C:SF41001
|
2.3
|
28.9
|
1.0
|
S2
|
C:SF41001
|
2.3
|
30.7
|
1.0
|
FE4
|
C:SF41001
|
2.7
|
29.1
|
1.0
|
FE3
|
C:SF41001
|
2.8
|
28.6
|
1.0
|
FE2
|
C:SF41001
|
2.9
|
28.4
|
1.0
|
CB
|
C:CYS22
|
3.1
|
30.1
|
1.0
|
NH2
|
C:ARG141
|
3.8
|
30.7
|
1.0
|
S1
|
C:SF41001
|
4.0
|
28.1
|
1.0
|
N
|
C:CYS22
|
4.0
|
31.4
|
1.0
|
CZ
|
C:ARG141
|
4.1
|
30.9
|
1.0
|
NH1
|
C:ARG141
|
4.1
|
29.6
|
1.0
|
CA
|
C:CYS22
|
4.2
|
31.7
|
1.0
|
OXT
|
C:SAH1005
|
4.3
|
24.3
|
1.0
|
CB
|
C:LEU20
|
4.3
|
32.4
|
1.0
|
SG
|
C:CYS18
|
4.6
|
29.9
|
1.0
|
N
|
C:SAH1005
|
4.8
|
24.5
|
1.0
|
CB
|
C:CYS25
|
4.8
|
27.3
|
1.0
|
SG
|
C:CYS25
|
4.8
|
29.0
|
1.0
|
CD1
|
C:LEU20
|
4.9
|
33.2
|
1.0
|
NE
|
C:ARG141
|
5.0
|
30.8
|
1.0
|
|
Iron binding site 10 out
of 16 in 9gm3
Go back to
Iron Binding Sites List in 9gm3
Iron binding site 10 out
of 16 in the Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Complex Formed Between the Radical Sam Protein Chlb and the Leader Region of Its Precursor Substrate Chla within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1001
b:28.4
occ:1.00
|
FE2
|
C:SF41001
|
0.0
|
28.4
|
1.0
|
N
|
C:SAH1005
|
2.2
|
24.5
|
1.0
|
OXT
|
C:SAH1005
|
2.3
|
24.3
|
1.0
|
S3
|
C:SF41001
|
2.3
|
29.2
|
1.0
|
S1
|
C:SF41001
|
2.4
|
28.1
|
1.0
|
S4
|
C:SF41001
|
2.4
|
28.9
|
1.0
|
FE4
|
C:SF41001
|
2.8
|
29.1
|
1.0
|
FE3
|
C:SF41001
|
2.9
|
28.6
|
1.0
|
FE1
|
C:SF41001
|
2.9
|
30.0
|
1.0
|
C
|
C:SAH1005
|
3.0
|
24.1
|
1.0
|
CA
|
C:SAH1005
|
3.0
|
23.5
|
1.0
|
SD
|
C:SAH1005
|
3.3
|
22.8
|
1.0
|
CG
|
C:SAH1005
|
3.6
|
22.6
|
1.0
|
CB
|
C:SAH1005
|
3.8
|
22.3
|
1.0
|
S2
|
C:SF41001
|
4.0
|
30.7
|
1.0
|
NH2
|
C:ARG141
|
4.1
|
30.7
|
1.0
|
O
|
C:SAH1005
|
4.2
|
24.9
|
1.0
|
SG
|
C:CYS18
|
4.5
|
29.9
|
1.0
|
C2'
|
C:SAH1005
|
4.7
|
20.6
|
1.0
|
O
|
C:GLY73
|
4.7
|
26.0
|
1.0
|
CB
|
C:ASN107
|
4.8
|
28.3
|
1.0
|
C3'
|
C:SAH1005
|
4.8
|
21.2
|
1.0
|
C5'
|
C:SAH1005
|
4.8
|
22.2
|
1.0
|
SG
|
C:CYS22
|
4.9
|
29.0
|
1.0
|
NH1
|
C:ARG141
|
4.9
|
29.6
|
1.0
|
CZ
|
C:ARG141
|
4.9
|
30.9
|
1.0
|
|
Reference:
J.Ruel,
T.Q.N.Nguyen,
Y.Morishita,
A.Usclat,
L.Martin,
P.Amara,
S.Kieffer-Jaquinod,
M.C.Stefanoiu,
E.De La Mora,
B.I.Morinaka,
Y.Nicolet.
Peptide Recognition and Mechanism of the Radical S -Adenosyl-L-Methionine Multiple Cyclophane Synthase Chlb. J.Am.Chem.Soc. V. 147 16850 2025.
ISSN: ESSN 1520-5126
PubMed: 40354606
DOI: 10.1021/JACS.4C16004
Page generated: Fri Aug 8 06:24:27 2025
|