Iron in PDB 9kqq: Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea

All present enzymatic activity of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea:
1.97.1.12;

The structure of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea also contains other interesting chemical elements:

Magnesium

(Mg)

218 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea (pdb code 9kqq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea, PDB code: 9kqq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:54.6 occ:1.00 FE1 A:SF4802 0.0 54.6 1.0 SG B:CYS568 2.2 41.5 1.0 S3 A:SF4802 2.3 36.7 1.0 S4 A:SF4802 2.3 36.3 1.0 S2 A:SF4802 2.3 34.9 1.0 FE2 A:SF4802 2.7 51.8 1.0 FE3 A:SF4802 2.7 52.2 1.0 FE4 A:SF4802 2.7 50.4 1.0 CB B:CYS568 3.3 35.3 1.0 CA B:CYS568 3.8 28.9 1.0 S1 A:SF4802 3.9 32.2 1.0 N B:CYS568 4.1 36.9 1.0 CZ3 B:TRP667 4.2 36.3 1.0 CD1 A:ILE720 4.3 23.6 1.0 CB B:CYS559 4.6 29.5 1.0 CG2 A:ILE720 4.7 24.8 1.0 SG B:CYS559 4.7 39.3 1.0 SG A:CYS575 4.8 40.6 1.0 CE3 B:TRP667 4.8 35.7 1.0 SG A:CYS584 4.9 37.9 1.0 C B:THR567 4.9 33.3 1.0 CG1 A:ILE720 4.9 30.5 1.0 NH2 A:ARG724 5.0 36.4 1.0

Iron binding site 2 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:51.8 occ:1.00 FE2 A:SF4802 0.0 51.8 1.0 SG A:CYS584 2.2 37.9 1.0 S3 A:SF4802 2.3 36.7 1.0 S4 A:SF4802 2.3 36.3 1.0 S1 A:SF4802 2.3 32.2 1.0 FE1 A:SF4802 2.7 54.6 1.0 FE4 A:SF4802 2.7 50.4 1.0 FE3 A:SF4802 2.7 52.2 1.0 CB A:CYS584 3.2 28.2 1.0 CA A:CYS584 3.8 31.1 1.0 S2 A:SF4802 3.9 34.9 1.0 CE3 B:TRP667 4.2 35.7 1.0 N A:CYS584 4.2 38.2 1.0 CD1 B:ILE702 4.3 35.8 1.0 CZ3 B:TRP667 4.3 36.3 1.0 CB A:CYS575 4.5 28.7 1.0 SG A:CYS575 4.7 40.6 1.0 SG B:CYS568 4.7 41.5 1.0 SG B:CYS559 4.8 39.3 1.0 CG1 B:ILE702 4.9 32.6 1.0 NH2 A:ARG724 4.9 36.4 1.0 CG2 B:ILE702 5.0 36.2 1.0

Iron binding site 3 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:52.2 occ:1.00 FE3 A:SF4802 0.0 52.2 1.0 SG A:CYS575 2.2 40.6 1.0 S2 A:SF4802 2.3 34.9 1.0 S1 A:SF4802 2.3 32.2 1.0 S4 A:SF4802 2.3 36.3 1.0 FE1 A:SF4802 2.7 54.6 1.0 FE4 A:SF4802 2.7 50.4 1.0 FE2 A:SF4802 2.7 51.8 1.0 CB A:CYS575 3.0 28.7 1.0 S3 A:SF4802 3.9 36.7 1.0 CA A:CYS575 4.4 27.2 1.0 N A:GLY577 4.5 30.7 1.0 CA A:GLY577 4.6 25.7 1.0 SG A:CYS584 4.6 37.9 1.0 N B:PRO562 4.6 38.8 1.0 SG B:CYS568 4.7 41.5 1.0 CD B:PRO562 4.7 33.8 1.0 SG B:CYS559 4.7 39.3 1.0 C A:GLY577 4.8 29.8 1.0 CD1 A:ILE720 4.8 23.6 1.0 C B:GLY561 4.8 37.6 1.0 CB B:PRO562 4.8 29.5 1.0 N A:CYS575 4.9 34.1 1.0 CA A:CYS584 4.9 31.1 1.0 CB A:CYS584 5.0 28.2 1.0 CA B:PRO562 5.0 30.7 1.0

Iron binding site 4 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:50.4 occ:1.00 FE4 A:SF4802 0.0 50.4 1.0 SG B:CYS559 2.2 39.3 1.0 S1 A:SF4802 2.3 32.2 1.0 S3 A:SF4802 2.3 36.7 1.0 S2 A:SF4802 2.3 34.9 1.0 FE2 A:SF4802 2.7 51.8 1.0 FE3 A:SF4802 2.7 52.2 1.0 FE1 A:SF4802 2.7 54.6 1.0 CB B:CYS559 3.0 29.5 1.0 S4 A:SF4802 3.9 36.3 1.0 CA B:CYS559 4.4 35.9 1.0 N B:GLY561 4.5 31.4 1.0 CA B:GLY561 4.5 26.6 1.0 N A:PRO578 4.6 28.0 1.0 SG A:CYS584 4.6 37.9 1.0 CD A:PRO578 4.7 28.6 1.0 CB A:PRO578 4.7 31.4 1.0 CD1 B:ILE702 4.7 35.8 1.0 SG A:CYS575 4.8 40.6 1.0 SG B:CYS568 4.8 41.5 1.0 CA A:PRO578 4.8 23.4 1.0 C A:GLY577 4.9 29.8 1.0 N B:CYS559 4.9 38.7 1.0 C B:GLY561 4.9 37.6 1.0

Iron binding site 5 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:51.0 occ:1.00 FE1 C:SF4101 0.0 51.0 1.0 SG C:CYS54 2.3 44.5 1.0 S4 C:SF4101 2.3 40.3 1.0 S3 C:SF4101 2.3 42.8 1.0 S2 C:SF4101 2.3 38.6 1.0 FE3 C:SF4101 2.7 55.3 1.0 FE4 C:SF4101 2.7 57.3 1.0 FE2 C:SF4101 2.7 62.2 1.0 CB C:CYS54 3.4 37.2 1.0 CG2 C:VAL67 3.9 39.0 1.0 S1 C:SF4101 3.9 40.8 1.0 N C:CYS54 3.9 38.2 1.0 CA C:CYS54 4.3 31.9 1.0 N C:LYS52 4.4 30.6 1.0 CA C:LYS52 4.4 26.0 1.0 N C:ARG53 4.5 33.4 1.0 SG C:CYS51 4.7 44.4 1.0 SG C:CYS48 4.7 45.4 1.0 CD1 C:LEU26 4.7 37.4 1.0 C C:LYS52 4.8 34.7 1.0 SG C:CYS21 4.8 47.0 1.0

Iron binding site 6 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:62.2 occ:1.00 FE2 C:SF4101 0.0 62.2 1.0 SG C:CYS51 2.3 44.4 1.0 S4 C:SF4101 2.3 40.3 1.0 S3 C:SF4101 2.3 42.8 1.0 S1 C:SF4101 2.3 40.8 1.0 FE3 C:SF4101 2.7 55.3 1.0 FE1 C:SF4101 2.7 51.0 1.0 FE4 C:SF4101 2.7 57.3 1.0 N C:CYS51 3.4 30.5 1.0 N C:LYS52 3.5 30.6 1.0 CB C:CYS51 3.6 35.7 1.0 S2 C:SF4101 3.9 38.6 1.0 CA C:CYS51 3.9 29.6 1.0 CD C:PRO22 4.0 35.3 1.0 C C:CYS51 4.1 34.6 1.0 N C:ARG53 4.1 33.4 1.0 C C:GLY50 4.3 30.0 1.0 N C:GLY50 4.3 34.1 1.0 CG2 C:VAL49 4.4 42.1 1.0 CA C:LYS52 4.4 26.0 1.0 CG C:PRO22 4.6 40.3 1.0 CA C:GLY50 4.6 27.2 1.0 SG C:CYS54 4.7 44.5 1.0 SG C:CYS48 4.7 45.4 1.0 SG C:CYS21 4.7 47.0 1.0 C C:LYS52 4.8 34.7 1.0 CB C:ARG53 4.8 35.6 1.0 N C:CYS54 4.9 38.2 1.0

Iron binding site 7 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:55.3 occ:1.00 FE3 C:SF4101 0.0 55.3 1.0 SG C:CYS21 2.3 47.0 1.0 S1 C:SF4101 2.3 40.8 1.0 S4 C:SF4101 2.3 40.3 1.0 S2 C:SF4101 2.3 38.6 1.0 FE4 C:SF4101 2.7 57.3 1.0 FE2 C:SF4101 2.7 62.2 1.0 FE1 C:SF4101 2.7 51.0 1.0 CB C:CYS21 3.3 39.0 1.0 CA C:CYS21 3.8 33.3 1.0 S3 C:SF4101 3.9 42.8 1.0 CD C:PRO22 3.9 35.3 1.0 CG2 C:VAL25 4.0 41.5 1.0 CB C:VAL25 4.1 41.3 1.0 OG1 C:THR23 4.2 55.6 1.0 N C:PRO22 4.5 41.8 1.0 C C:CYS21 4.5 40.9 1.0 SG C:CYS51 4.6 44.4 1.0 SG C:CYS54 4.7 44.5 1.0 CD1 C:LEU26 4.8 37.4 1.0 CG C:LEU26 4.8 42.6 1.0 SG C:CYS48 4.9 45.4 1.0 N C:CYS21 5.0 34.5 1.0 N C:VAL25 5.0 44.6 1.0 N C:THR23 5.0 44.4 1.0

Iron binding site 8 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:57.3 occ:1.00 FE4 C:SF4101 0.0 57.3 1.0 SG C:CYS48 2.3 45.4 1.0 S3 C:SF4101 2.3 42.8 1.0 S1 C:SF4101 2.3 40.8 1.0 S2 C:SF4101 2.3 38.6 1.0 FE3 C:SF4101 2.7 55.3 1.0 FE1 C:SF4101 2.7 51.0 1.0 FE2 C:SF4101 2.7 62.2 1.0 CB C:CYS48 3.4 36.5 1.0 CA C:CYS48 3.8 38.2 1.0 S4 C:SF4101 3.9 40.3 1.0 N C:GLY50 4.0 34.1 1.0 N C:VAL49 4.1 33.7 1.0 CG2 C:VAL25 4.3 41.5 1.0 C C:CYS48 4.3 44.2 1.0 CA C:GLY50 4.4 27.2 1.0 CG2 C:VAL5 4.5 42.6 1.0 CG2 C:VAL67 4.6 39.0 1.0 CB C:VAL25 4.7 41.3 1.0 N C:CYS51 4.7 30.5 1.0 SG C:CYS21 4.7 47.0 1.0 CG1 C:VAL25 4.8 38.0 1.0 SG C:CYS54 4.9 44.5 1.0 SG C:CYS51 4.9 44.4 1.0 OG1 C:THR23 4.9 55.6 1.0 CG1 C:VAL67 5.0 43.6 1.0 C C:GLY50 5.0 30.0 1.0

Iron binding site 9 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:63.2 occ:1.00 FE1 C:SF4102 0.0 63.2 1.0 SG C:CYS58 2.3 46.9 1.0 S3 C:SF4102 2.3 41.4 1.0 S2 C:SF4102 2.3 41.1 1.0 S4 C:SF4102 2.3 42.6 1.0 FE3 C:SF4102 2.7 59.4 1.0 FE2 C:SF4102 2.7 64.9 1.0 FE4 C:SF4102 2.7 64.4 1.0 CB C:CYS58 3.4 37.9 1.0 CA C:CYS58 3.8 35.3 1.0 S1 C:SF4102 3.9 46.4 1.0 CD C:PRO59 4.0 37.8 1.0 CB C:SER64 4.0 37.6 1.0 CG1 C:VAL65 4.2 24.2 1.0 OG C:SER64 4.5 48.0 1.0 N C:VAL65 4.6 36.0 1.0 SG C:CYS14 4.6 49.1 1.0 N C:PRO59 4.7 44.9 1.0 C C:CYS58 4.7 39.3 1.0 SG C:CYS17 4.7 46.0 1.0 CB C:CYS17 4.8 39.4 1.0 N C:SER64 4.8 38.9 1.0 CG2 C:THR60 4.8 40.5 1.0 CA C:SER64 4.8 39.7 1.0 CB C:VAL65 4.9 32.7 1.0 OG1 C:THR60 4.9 52.2 1.0 SG C:CYS11 4.9 53.7 1.0 N C:CYS58 5.0 38.9 1.0

Iron binding site 10 out of 12 in the Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Psi-Lhci Supercomplex Binding with 8 Lhcas From C. Subellipsoidea within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:64.9 occ:1.00 FE2 C:SF4102 0.0 64.9 1.0 SG C:CYS17 2.3 46.0 1.0 S4 C:SF4102 2.3 42.6 1.0 S1 C:SF4102 2.3 46.4 1.0 S3 C:SF4102 2.3 41.4 1.0 FE4 C:SF4102 2.7 64.4 1.0 FE3 C:SF4102 2.7 59.4 1.0 FE1 C:SF4102 2.7 63.2 1.0 CB C:CYS17 3.1 39.4 1.0 N C:CYS17 3.8 36.3 1.0 S2 C:SF4102 3.9 41.1 1.0 CB C:ALA40 4.0 38.4 1.0 CA C:CYS17 4.0 33.3 1.0 CG1 C:VAL65 4.6 24.2 1.0 SG C:CYS11 4.7 53.7 1.0 N C:GLN16 4.7 42.2 1.0 SG C:CYS14 4.7 49.1 1.0 SG C:CYS58 4.8 46.9 1.0 N C:THR15 4.9 44.5 1.0 N C:VAL18 4.9 41.2 1.0 CB C:VAL65 5.0 32.7 1.0 C C:GLN16 5.0 47.4 1.0 C C:CYS17 5.0 40.0 1.0

P.C.Tsai, K.Kato, J.R.Shen, F.Akita. Structural Study of the Chlorophyll Between LHCA8 and Psaj in An Antarctica Green Algal Photosystem I-Lhci Supercomplex Revealed By Its Atomic Structure. Biochim Biophys Acta V.1866 49543 2025BIOENERG.
ISSN: ISSN 1879-2650
PubMed: 39947506
DOI: 10.1016/J.BBABIO.2025.149543