Iron in PDB 9krr: Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
Protein crystallography data
The structure of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803, PDB code: 9krr
was solved by
B.T.Zhang,
S.W.Liu,
Y.C.Xu,
W.Sheng,
Y.Gong,
P.Cao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
56.39 /
1.93
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.899,
74.437,
133.182,
90,
106.11,
90
|
|
R / Rfree (%)
|
16.8 /
21
|
Other elements in 9krr:
The structure of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
(pdb code 9krr). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803, PDB code: 9krr:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 1 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe101
b:14.3
occ:1.00
|
FE
|
A:HEC101
|
0.0
|
14.3
|
1.0
|
|
NB
|
A:HEC101
|
2.0
|
13.0
|
1.0
|
|
ND
|
A:HEC101
|
2.0
|
14.5
|
1.0
|
|
NA
|
A:HEC101
|
2.0
|
10.4
|
1.0
|
|
NC
|
A:HEC101
|
2.1
|
14.4
|
1.0
|
|
NE2
|
A:HIS18
|
2.1
|
13.1
|
1.0
|
|
SD
|
A:MET58
|
2.3
|
16.1
|
1.0
|
|
CD2
|
A:HIS18
|
3.0
|
13.8
|
1.0
|
|
C1B
|
A:HEC101
|
3.0
|
12.3
|
1.0
|
|
C1D
|
A:HEC101
|
3.0
|
19.2
|
1.0
|
|
C4A
|
A:HEC101
|
3.1
|
12.8
|
1.0
|
|
C4D
|
A:HEC101
|
3.1
|
17.6
|
1.0
|
|
C4B
|
A:HEC101
|
3.1
|
16.1
|
1.0
|
|
C1A
|
A:HEC101
|
3.1
|
11.9
|
1.0
|
|
C4C
|
A:HEC101
|
3.1
|
16.2
|
1.0
|
|
C1C
|
A:HEC101
|
3.1
|
17.1
|
1.0
|
|
CE1
|
A:HIS18
|
3.2
|
14.7
|
1.0
|
|
CG
|
A:MET58
|
3.3
|
19.4
|
1.0
|
|
CHB
|
A:HEC101
|
3.4
|
13.8
|
1.0
|
|
CHD
|
A:HEC101
|
3.4
|
14.1
|
1.0
|
|
CHA
|
A:HEC101
|
3.4
|
14.8
|
1.0
|
|
CE
|
A:MET58
|
3.4
|
14.7
|
1.0
|
|
CHC
|
A:HEC101
|
3.5
|
18.8
|
1.0
|
|
CB
|
A:MET58
|
4.1
|
19.0
|
1.0
|
|
CG
|
A:HIS18
|
4.2
|
14.5
|
1.0
|
|
ND1
|
A:HIS18
|
4.2
|
14.8
|
1.0
|
|
C2B
|
A:HEC101
|
4.2
|
13.1
|
1.0
|
|
C3B
|
A:HEC101
|
4.3
|
13.3
|
1.0
|
|
C2D
|
A:HEC101
|
4.3
|
18.6
|
1.0
|
|
C3D
|
A:HEC101
|
4.3
|
15.3
|
1.0
|
|
C3A
|
A:HEC101
|
4.3
|
10.5
|
1.0
|
|
C2A
|
A:HEC101
|
4.3
|
14.0
|
1.0
|
|
C2C
|
A:HEC101
|
4.3
|
18.2
|
1.0
|
|
C3C
|
A:HEC101
|
4.3
|
17.6
|
1.0
|
|
Iron binding site 2 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 2 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe101
b:13.5
occ:1.00
|
FE
|
B:HEC101
|
0.0
|
13.5
|
1.0
|
|
NE2
|
B:HIS18
|
2.0
|
10.9
|
1.0
|
|
NB
|
B:HEC101
|
2.0
|
13.0
|
1.0
|
|
NA
|
B:HEC101
|
2.0
|
14.1
|
1.0
|
|
ND
|
B:HEC101
|
2.0
|
13.4
|
1.0
|
|
NC
|
B:HEC101
|
2.0
|
14.2
|
1.0
|
|
SD
|
B:MET58
|
2.3
|
16.6
|
1.0
|
|
CD2
|
B:HIS18
|
3.0
|
13.7
|
1.0
|
|
CE1
|
B:HIS18
|
3.0
|
12.0
|
1.0
|
|
C1B
|
B:HEC101
|
3.0
|
11.9
|
1.0
|
|
C1D
|
B:HEC101
|
3.0
|
13.1
|
1.0
|
|
C4A
|
B:HEC101
|
3.0
|
13.7
|
1.0
|
|
C1A
|
B:HEC101
|
3.1
|
14.2
|
1.0
|
|
C4C
|
B:HEC101
|
3.1
|
14.8
|
1.0
|
|
C1C
|
B:HEC101
|
3.1
|
15.4
|
1.0
|
|
C4B
|
B:HEC101
|
3.1
|
11.1
|
1.0
|
|
C4D
|
B:HEC101
|
3.1
|
11.4
|
1.0
|
|
CHD
|
B:HEC101
|
3.4
|
12.6
|
1.0
|
|
CHB
|
B:HEC101
|
3.4
|
12.1
|
1.0
|
|
CE
|
B:MET58
|
3.4
|
14.9
|
1.0
|
|
CHA
|
B:HEC101
|
3.4
|
10.8
|
1.0
|
|
CHC
|
B:HEC101
|
3.4
|
11.5
|
1.0
|
|
CG
|
B:MET58
|
3.5
|
19.0
|
1.0
|
|
CB
|
B:MET58
|
4.1
|
18.8
|
1.0
|
|
CG
|
B:HIS18
|
4.1
|
16.2
|
1.0
|
|
ND1
|
B:HIS18
|
4.1
|
12.4
|
1.0
|
|
C2B
|
B:HEC101
|
4.3
|
14.3
|
1.0
|
|
C3A
|
B:HEC101
|
4.3
|
10.9
|
1.0
|
|
C2A
|
B:HEC101
|
4.3
|
10.9
|
1.0
|
|
C3B
|
B:HEC101
|
4.3
|
11.9
|
1.0
|
|
C2D
|
B:HEC101
|
4.3
|
15.8
|
1.0
|
|
C2C
|
B:HEC101
|
4.3
|
17.6
|
1.0
|
|
C3C
|
B:HEC101
|
4.3
|
15.4
|
1.0
|
|
C3D
|
B:HEC101
|
4.3
|
16.4
|
1.0
|
|
Iron binding site 3 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 3 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe101
b:12.2
occ:1.00
|
FE
|
C:HEC101
|
0.0
|
12.2
|
1.0
|
|
NB
|
C:HEC101
|
2.0
|
12.7
|
1.0
|
|
NE2
|
C:HIS18
|
2.0
|
10.4
|
1.0
|
|
NA
|
C:HEC101
|
2.0
|
11.5
|
1.0
|
|
NC
|
C:HEC101
|
2.1
|
12.5
|
1.0
|
|
ND
|
C:HEC101
|
2.1
|
14.1
|
1.0
|
|
SD
|
C:MET58
|
2.3
|
15.9
|
1.0
|
|
CD2
|
C:HIS18
|
3.0
|
10.9
|
1.0
|
|
C1B
|
C:HEC101
|
3.0
|
12.5
|
1.0
|
|
C4B
|
C:HEC101
|
3.0
|
14.3
|
1.0
|
|
CE1
|
C:HIS18
|
3.0
|
11.6
|
1.0
|
|
C4A
|
C:HEC101
|
3.0
|
11.6
|
1.0
|
|
C1A
|
C:HEC101
|
3.0
|
11.4
|
1.0
|
|
C1C
|
C:HEC101
|
3.1
|
14.7
|
1.0
|
|
C4D
|
C:HEC101
|
3.1
|
16.2
|
1.0
|
|
C1D
|
C:HEC101
|
3.1
|
12.3
|
1.0
|
|
C4C
|
C:HEC101
|
3.1
|
14.9
|
1.0
|
|
CHB
|
C:HEC101
|
3.4
|
11.2
|
1.0
|
|
CG
|
C:MET58
|
3.4
|
18.6
|
1.0
|
|
CHC
|
C:HEC101
|
3.4
|
11.7
|
1.0
|
|
CE
|
C:MET58
|
3.4
|
15.4
|
1.0
|
|
CHA
|
C:HEC101
|
3.4
|
10.7
|
1.0
|
|
CHD
|
C:HEC101
|
3.5
|
11.6
|
1.0
|
|
CB
|
C:MET58
|
4.0
|
22.6
|
1.0
|
|
ND1
|
C:HIS18
|
4.1
|
10.4
|
1.0
|
|
CG
|
C:HIS18
|
4.1
|
10.3
|
1.0
|
|
C2B
|
C:HEC101
|
4.2
|
12.2
|
1.0
|
|
C3B
|
C:HEC101
|
4.2
|
17.2
|
1.0
|
|
C3A
|
C:HEC101
|
4.3
|
10.8
|
1.0
|
|
C2A
|
C:HEC101
|
4.3
|
12.7
|
1.0
|
|
C2C
|
C:HEC101
|
4.3
|
13.9
|
1.0
|
|
C3D
|
C:HEC101
|
4.3
|
12.5
|
1.0
|
|
C3C
|
C:HEC101
|
4.3
|
12.9
|
1.0
|
|
C2D
|
C:HEC101
|
4.3
|
13.6
|
1.0
|
|
Iron binding site 4 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 4 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe101
b:11.3
occ:1.00
|
FE
|
D:HEC101
|
0.0
|
11.3
|
1.0
|
|
NB
|
D:HEC101
|
2.0
|
10.6
|
1.0
|
|
NA
|
D:HEC101
|
2.0
|
10.4
|
1.0
|
|
ND
|
D:HEC101
|
2.0
|
10.3
|
1.0
|
|
NE2
|
D:HIS18
|
2.0
|
10.5
|
1.0
|
|
NC
|
D:HEC101
|
2.1
|
10.5
|
1.0
|
|
SD
|
D:MET58
|
2.3
|
12.6
|
1.0
|
|
C1B
|
D:HEC101
|
3.0
|
10.7
|
1.0
|
|
CE1
|
D:HIS18
|
3.0
|
10.4
|
1.0
|
|
C1D
|
D:HEC101
|
3.0
|
12.7
|
1.0
|
|
C4A
|
D:HEC101
|
3.0
|
10.4
|
1.0
|
|
CD2
|
D:HIS18
|
3.0
|
10.6
|
1.0
|
|
C1A
|
D:HEC101
|
3.1
|
10.3
|
1.0
|
|
C4C
|
D:HEC101
|
3.1
|
11.9
|
1.0
|
|
C4D
|
D:HEC101
|
3.1
|
11.4
|
1.0
|
|
C4B
|
D:HEC101
|
3.1
|
10.7
|
1.0
|
|
C1C
|
D:HEC101
|
3.1
|
10.6
|
1.0
|
|
CE
|
D:MET58
|
3.3
|
14.5
|
1.0
|
|
CHB
|
D:HEC101
|
3.4
|
12.2
|
1.0
|
|
CHD
|
D:HEC101
|
3.4
|
13.1
|
1.0
|
|
CHA
|
D:HEC101
|
3.4
|
10.3
|
1.0
|
|
CG
|
D:MET58
|
3.5
|
14.1
|
1.0
|
|
CHC
|
D:HEC101
|
3.5
|
10.7
|
1.0
|
|
CB
|
D:MET58
|
4.0
|
15.5
|
1.0
|
|
ND1
|
D:HIS18
|
4.1
|
10.5
|
1.0
|
|
CG
|
D:HIS18
|
4.2
|
10.6
|
1.0
|
|
C2B
|
D:HEC101
|
4.2
|
12.5
|
1.0
|
|
C3B
|
D:HEC101
|
4.3
|
12.2
|
1.0
|
|
C3A
|
D:HEC101
|
4.3
|
10.4
|
1.0
|
|
C2D
|
D:HEC101
|
4.3
|
13.8
|
1.0
|
|
C2A
|
D:HEC101
|
4.3
|
10.3
|
1.0
|
|
C3D
|
D:HEC101
|
4.3
|
10.2
|
1.0
|
|
C3C
|
D:HEC101
|
4.3
|
10.5
|
1.0
|
|
C2C
|
D:HEC101
|
4.3
|
13.6
|
1.0
|
|
Iron binding site 5 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 5 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe101
b:11.1
occ:1.00
|
FE
|
E:HEC101
|
0.0
|
11.1
|
1.0
|
|
NB
|
E:HEC101
|
2.0
|
13.3
|
1.0
|
|
NE2
|
E:HIS18
|
2.0
|
12.9
|
1.0
|
|
ND
|
E:HEC101
|
2.0
|
12.7
|
1.0
|
|
NA
|
E:HEC101
|
2.0
|
14.1
|
1.0
|
|
NC
|
E:HEC101
|
2.1
|
12.6
|
1.0
|
|
SD
|
E:MET58
|
2.3
|
15.3
|
1.0
|
|
CD2
|
E:HIS18
|
3.0
|
13.9
|
1.0
|
|
C4D
|
E:HEC101
|
3.0
|
11.5
|
1.0
|
|
CE1
|
E:HIS18
|
3.0
|
11.9
|
1.0
|
|
C4B
|
E:HEC101
|
3.0
|
12.2
|
1.0
|
|
C1B
|
E:HEC101
|
3.0
|
13.6
|
1.0
|
|
C1A
|
E:HEC101
|
3.0
|
15.3
|
1.0
|
|
C1D
|
E:HEC101
|
3.1
|
12.7
|
1.0
|
|
C1C
|
E:HEC101
|
3.1
|
15.8
|
1.0
|
|
C4C
|
E:HEC101
|
3.1
|
13.5
|
1.0
|
|
C4A
|
E:HEC101
|
3.1
|
10.9
|
1.0
|
|
CHA
|
E:HEC101
|
3.4
|
10.7
|
1.0
|
|
CHC
|
E:HEC101
|
3.4
|
13.2
|
1.0
|
|
CG
|
E:MET58
|
3.4
|
16.1
|
1.0
|
|
CHD
|
E:HEC101
|
3.4
|
11.7
|
1.0
|
|
CHB
|
E:HEC101
|
3.4
|
10.9
|
1.0
|
|
CE
|
E:MET58
|
3.5
|
19.2
|
1.0
|
|
CB
|
E:MET58
|
4.1
|
15.3
|
1.0
|
|
ND1
|
E:HIS18
|
4.1
|
11.1
|
1.0
|
|
CG
|
E:HIS18
|
4.1
|
15.1
|
1.0
|
|
C3B
|
E:HEC101
|
4.2
|
11.1
|
1.0
|
|
C2B
|
E:HEC101
|
4.2
|
13.0
|
1.0
|
|
C3D
|
E:HEC101
|
4.3
|
12.4
|
1.0
|
|
C2D
|
E:HEC101
|
4.3
|
15.1
|
1.0
|
|
C2A
|
E:HEC101
|
4.3
|
14.3
|
1.0
|
|
C3A
|
E:HEC101
|
4.3
|
10.9
|
1.0
|
|
C2C
|
E:HEC101
|
4.3
|
12.4
|
1.0
|
|
C3C
|
E:HEC101
|
4.3
|
13.0
|
1.0
|
|
Iron binding site 6 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 6 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe101
b:11.6
occ:1.00
|
FE
|
F:HEC101
|
0.0
|
11.6
|
1.0
|
|
NB
|
F:HEC101
|
2.0
|
12.6
|
1.0
|
|
ND
|
F:HEC101
|
2.0
|
11.2
|
1.0
|
|
NE2
|
F:HIS18
|
2.0
|
11.9
|
1.0
|
|
NA
|
F:HEC101
|
2.0
|
11.2
|
1.0
|
|
NC
|
F:HEC101
|
2.0
|
11.0
|
1.0
|
|
SD
|
F:MET58
|
2.3
|
14.2
|
1.0
|
|
CE1
|
F:HIS18
|
3.0
|
13.0
|
1.0
|
|
C1B
|
F:HEC101
|
3.0
|
11.1
|
1.0
|
|
CD2
|
F:HIS18
|
3.0
|
13.6
|
1.0
|
|
C1D
|
F:HEC101
|
3.0
|
12.5
|
1.0
|
|
C4A
|
F:HEC101
|
3.0
|
11.2
|
1.0
|
|
C4B
|
F:HEC101
|
3.0
|
10.9
|
1.0
|
|
C4C
|
F:HEC101
|
3.0
|
12.6
|
1.0
|
|
C4D
|
F:HEC101
|
3.0
|
13.7
|
1.0
|
|
C1A
|
F:HEC101
|
3.1
|
11.7
|
1.0
|
|
C1C
|
F:HEC101
|
3.1
|
13.9
|
1.0
|
|
CHD
|
F:HEC101
|
3.4
|
12.4
|
1.0
|
|
CHB
|
F:HEC101
|
3.4
|
11.2
|
1.0
|
|
CG
|
F:MET58
|
3.4
|
19.4
|
1.0
|
|
CE
|
F:MET58
|
3.4
|
13.2
|
1.0
|
|
CHA
|
F:HEC101
|
3.4
|
11.3
|
1.0
|
|
CHC
|
F:HEC101
|
3.4
|
13.4
|
1.0
|
|
CB
|
F:MET58
|
4.1
|
18.2
|
1.0
|
|
ND1
|
F:HIS18
|
4.1
|
13.0
|
1.0
|
|
CG
|
F:HIS18
|
4.1
|
14.3
|
1.0
|
|
C2B
|
F:HEC101
|
4.2
|
11.0
|
1.0
|
|
C3B
|
F:HEC101
|
4.2
|
13.2
|
1.0
|
|
C2D
|
F:HEC101
|
4.3
|
16.4
|
1.0
|
|
C3A
|
F:HEC101
|
4.3
|
11.3
|
1.0
|
|
C3D
|
F:HEC101
|
4.3
|
15.6
|
1.0
|
|
C2A
|
F:HEC101
|
4.3
|
11.4
|
1.0
|
|
C3C
|
F:HEC101
|
4.3
|
15.5
|
1.0
|
|
C2C
|
F:HEC101
|
4.3
|
16.1
|
1.0
|
|
Iron binding site 7 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 7 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe102
b:12.8
occ:1.00
|
FE
|
G:HEC102
|
0.0
|
12.8
|
1.0
|
|
NE2
|
G:HIS18
|
1.9
|
11.4
|
1.0
|
|
NB
|
G:HEC102
|
2.0
|
13.6
|
1.0
|
|
NA
|
G:HEC102
|
2.1
|
11.6
|
1.0
|
|
ND
|
G:HEC102
|
2.1
|
13.0
|
1.0
|
|
NC
|
G:HEC102
|
2.1
|
12.6
|
1.0
|
|
SD
|
G:MET58
|
2.3
|
16.5
|
1.0
|
|
CE1
|
G:HIS18
|
2.8
|
13.6
|
1.0
|
|
C4B
|
G:HEC102
|
3.0
|
13.3
|
1.0
|
|
C1B
|
G:HEC102
|
3.0
|
11.8
|
1.0
|
|
CD2
|
G:HIS18
|
3.0
|
14.3
|
1.0
|
|
C4A
|
G:HEC102
|
3.1
|
11.8
|
1.0
|
|
C4D
|
G:HEC102
|
3.1
|
13.6
|
1.0
|
|
C1C
|
G:HEC102
|
3.1
|
17.1
|
1.0
|
|
C1D
|
G:HEC102
|
3.1
|
15.2
|
1.0
|
|
C1A
|
G:HEC102
|
3.1
|
13.6
|
1.0
|
|
C4C
|
G:HEC102
|
3.1
|
15.6
|
1.0
|
|
CHC
|
G:HEC102
|
3.4
|
16.3
|
1.0
|
|
CHB
|
G:HEC102
|
3.4
|
11.8
|
1.0
|
|
CE
|
G:MET58
|
3.4
|
15.6
|
1.0
|
|
CHD
|
G:HEC102
|
3.4
|
14.9
|
1.0
|
|
CHA
|
G:HEC102
|
3.4
|
12.4
|
1.0
|
|
CG
|
G:MET58
|
3.5
|
19.5
|
1.0
|
|
ND1
|
G:HIS18
|
4.0
|
13.6
|
1.0
|
|
CG
|
G:HIS18
|
4.1
|
15.6
|
1.0
|
|
CB
|
G:MET58
|
4.1
|
17.2
|
1.0
|
|
C2B
|
G:HEC102
|
4.2
|
14.3
|
1.0
|
|
C3B
|
G:HEC102
|
4.2
|
14.0
|
1.0
|
|
C3A
|
G:HEC102
|
4.3
|
12.7
|
1.0
|
|
C3D
|
G:HEC102
|
4.3
|
15.6
|
1.0
|
|
C2A
|
G:HEC102
|
4.3
|
11.7
|
1.0
|
|
C2C
|
G:HEC102
|
4.3
|
16.0
|
1.0
|
|
C2D
|
G:HEC102
|
4.3
|
15.5
|
1.0
|
|
C3C
|
G:HEC102
|
4.3
|
15.7
|
1.0
|
|
Iron binding site 8 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 8 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe102
b:11.9
occ:1.00
|
FE
|
H:HEC102
|
0.0
|
11.9
|
1.0
|
|
NB
|
H:HEC102
|
2.0
|
14.2
|
1.0
|
|
NE2
|
H:HIS18
|
2.0
|
10.8
|
1.0
|
|
ND
|
H:HEC102
|
2.1
|
14.3
|
1.0
|
|
NA
|
H:HEC102
|
2.1
|
10.2
|
1.0
|
|
NC
|
H:HEC102
|
2.1
|
12.9
|
1.0
|
|
SD
|
H:MET58
|
2.3
|
13.8
|
1.0
|
|
CD2
|
H:HIS18
|
3.0
|
11.6
|
1.0
|
|
C1B
|
H:HEC102
|
3.0
|
10.2
|
1.0
|
|
CE1
|
H:HIS18
|
3.0
|
13.2
|
1.0
|
|
C4B
|
H:HEC102
|
3.0
|
10.4
|
1.0
|
|
C4D
|
H:HEC102
|
3.1
|
15.1
|
1.0
|
|
C1D
|
H:HEC102
|
3.1
|
11.9
|
1.0
|
|
C4A
|
H:HEC102
|
3.1
|
10.2
|
1.0
|
|
C4C
|
H:HEC102
|
3.1
|
14.6
|
1.0
|
|
C1A
|
H:HEC102
|
3.1
|
13.1
|
1.0
|
|
C1C
|
H:HEC102
|
3.1
|
13.1
|
1.0
|
|
CE
|
H:MET58
|
3.4
|
12.6
|
1.0
|
|
CHA
|
H:HEC102
|
3.4
|
12.6
|
1.0
|
|
CG
|
H:MET58
|
3.4
|
17.3
|
1.0
|
|
CHB
|
H:HEC102
|
3.4
|
10.4
|
1.0
|
|
CHD
|
H:HEC102
|
3.4
|
13.2
|
1.0
|
|
CHC
|
H:HEC102
|
3.4
|
12.9
|
1.0
|
|
CB
|
H:MET58
|
4.1
|
15.0
|
1.0
|
|
ND1
|
H:HIS18
|
4.1
|
13.3
|
1.0
|
|
CG
|
H:HIS18
|
4.1
|
13.7
|
1.0
|
|
C2B
|
H:HEC102
|
4.2
|
12.6
|
1.0
|
|
C3B
|
H:HEC102
|
4.2
|
11.7
|
1.0
|
|
C2D
|
H:HEC102
|
4.3
|
13.8
|
1.0
|
|
C3D
|
H:HEC102
|
4.3
|
16.6
|
1.0
|
|
C3A
|
H:HEC102
|
4.3
|
10.2
|
1.0
|
|
C3C
|
H:HEC102
|
4.3
|
12.5
|
1.0
|
|
C2C
|
H:HEC102
|
4.3
|
14.2
|
1.0
|
|
C2A
|
H:HEC102
|
4.3
|
11.4
|
1.0
|
|
Iron binding site 9 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 9 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe101
b:14.0
occ:1.00
|
FE
|
I:HEC101
|
0.0
|
14.0
|
1.0
|
|
NB
|
I:HEC101
|
2.0
|
15.2
|
1.0
|
|
NE2
|
I:HIS18
|
2.0
|
12.2
|
1.0
|
|
NA
|
I:HEC101
|
2.0
|
12.1
|
1.0
|
|
ND
|
I:HEC101
|
2.1
|
17.0
|
1.0
|
|
NC
|
I:HEC101
|
2.1
|
15.5
|
1.0
|
|
SD
|
I:MET58
|
2.3
|
17.3
|
1.0
|
|
CD2
|
I:HIS18
|
3.0
|
15.4
|
1.0
|
|
C4B
|
I:HEC101
|
3.0
|
13.4
|
1.0
|
|
C1B
|
I:HEC101
|
3.0
|
15.7
|
1.0
|
|
C4A
|
I:HEC101
|
3.0
|
13.4
|
1.0
|
|
CE1
|
I:HIS18
|
3.0
|
14.3
|
1.0
|
|
C4D
|
I:HEC101
|
3.0
|
14.6
|
1.0
|
|
C1A
|
I:HEC101
|
3.1
|
15.0
|
1.0
|
|
C1D
|
I:HEC101
|
3.1
|
15.3
|
1.0
|
|
C1C
|
I:HEC101
|
3.1
|
15.8
|
1.0
|
|
C4C
|
I:HEC101
|
3.1
|
13.8
|
1.0
|
|
CG
|
I:MET58
|
3.4
|
18.1
|
1.0
|
|
CHB
|
I:HEC101
|
3.4
|
13.9
|
1.0
|
|
CHA
|
I:HEC101
|
3.4
|
12.1
|
1.0
|
|
CHC
|
I:HEC101
|
3.4
|
16.5
|
1.0
|
|
CE
|
I:MET58
|
3.5
|
15.4
|
1.0
|
|
CHD
|
I:HEC101
|
3.5
|
12.1
|
1.0
|
|
CB
|
I:MET58
|
4.1
|
22.4
|
1.0
|
|
ND1
|
I:HIS18
|
4.1
|
12.1
|
1.0
|
|
CG
|
I:HIS18
|
4.2
|
13.4
|
1.0
|
|
C2B
|
I:HEC101
|
4.2
|
15.7
|
1.0
|
|
C3B
|
I:HEC101
|
4.2
|
15.3
|
1.0
|
|
C3A
|
I:HEC101
|
4.2
|
12.2
|
1.0
|
|
C2A
|
I:HEC101
|
4.3
|
12.9
|
1.0
|
|
C3D
|
I:HEC101
|
4.3
|
13.7
|
1.0
|
|
C2D
|
I:HEC101
|
4.3
|
15.9
|
1.0
|
|
C2C
|
I:HEC101
|
4.3
|
19.3
|
1.0
|
|
C3C
|
I:HEC101
|
4.3
|
13.1
|
1.0
|
|
Iron binding site 10 out
of 12 in 9krr
Go back to
Iron Binding Sites List in 9krr
Iron binding site 10 out
of 12 in the Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Reduced Cytochrome C6 From Synechocystis Pcc 6803 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe101
b:12.4
occ:1.00
|
FE
|
J:HEC101
|
0.0
|
12.4
|
1.0
|
|
NB
|
J:HEC101
|
2.0
|
12.3
|
1.0
|
|
NE2
|
J:HIS18
|
2.0
|
12.3
|
1.0
|
|
NA
|
J:HEC101
|
2.1
|
12.5
|
1.0
|
|
NC
|
J:HEC101
|
2.1
|
13.7
|
1.0
|
|
ND
|
J:HEC101
|
2.1
|
12.4
|
1.0
|
|
SD
|
J:MET58
|
2.3
|
13.4
|
1.0
|
|
CD2
|
J:HIS18
|
3.0
|
12.2
|
1.0
|
|
C1B
|
J:HEC101
|
3.0
|
12.4
|
1.0
|
|
CE1
|
J:HIS18
|
3.0
|
12.3
|
1.0
|
|
C4B
|
J:HEC101
|
3.0
|
12.3
|
1.0
|
|
C4A
|
J:HEC101
|
3.1
|
12.5
|
1.0
|
|
C1D
|
J:HEC101
|
3.1
|
13.2
|
1.0
|
|
C1C
|
J:HEC101
|
3.1
|
13.5
|
1.0
|
|
C4C
|
J:HEC101
|
3.1
|
13.8
|
1.0
|
|
C4D
|
J:HEC101
|
3.1
|
13.0
|
1.0
|
|
C1A
|
J:HEC101
|
3.1
|
12.6
|
1.0
|
|
CE
|
J:MET58
|
3.4
|
15.7
|
1.0
|
|
CG
|
J:MET58
|
3.4
|
15.0
|
1.0
|
|
CHB
|
J:HEC101
|
3.4
|
12.4
|
1.0
|
|
CHC
|
J:HEC101
|
3.4
|
12.2
|
1.0
|
|
CHD
|
J:HEC101
|
3.4
|
12.3
|
1.0
|
|
CHA
|
J:HEC101
|
3.5
|
12.6
|
1.0
|
|
CB
|
J:MET58
|
4.0
|
20.0
|
1.0
|
|
ND1
|
J:HIS18
|
4.1
|
12.2
|
1.0
|
|
CG
|
J:HIS18
|
4.1
|
12.1
|
1.0
|
|
C2B
|
J:HEC101
|
4.2
|
12.3
|
1.0
|
|
C3B
|
J:HEC101
|
4.2
|
12.3
|
1.0
|
|
C3A
|
J:HEC101
|
4.3
|
12.6
|
1.0
|
|
C2C
|
J:HEC101
|
4.3
|
15.0
|
1.0
|
|
C2D
|
J:HEC101
|
4.3
|
13.9
|
1.0
|
|
C2A
|
J:HEC101
|
4.3
|
12.6
|
1.0
|
|
C3C
|
J:HEC101
|
4.3
|
15.2
|
1.0
|
|
C3D
|
J:HEC101
|
4.3
|
13.7
|
1.0
|
|
Reference:
B.Zhang,
Y.Xu,
S.Liu,
S.Chen,
W.Zhao,
Z.Li,
J.Wang,
W.Zhao,
H.Zhang,
Y.Dong,
Y.Gong,
W.Sheng,
P.Cao.
A High-Resolution Crystallographic Study of Cytochrome C6: Structural Basis For Electron Transfer in Cyanobacterial Photosynthesis Int J Mol Sci V. 26 2025.
ISSN: ESSN 1422-0067
DOI: 10.3390/IJMS26020824
Page generated: Fri Aug 8 07:06:14 2025
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