Iron in PDB 9lk5: The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana

All present enzymatic activity of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana:
1.10.3.9;

The structure of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana also contains other interesting chemical elements:

Magnesium

(Mg)

204 atoms

The binding sites of Iron atom in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana (pdb code 9lk5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana, PDB code: 9lk5:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe409 b:40.7 occ:1.00 NE2 D:HIS215 2.2 29.4 1.0 NE2 A:HIS215 2.2 32.5 1.0 NE2 A:HIS272 2.3 41.9 1.0 NE2 D:HIS269 2.3 33.8 1.0 O2 A:BCT407 2.3 45.0 1.0 O3 A:BCT407 2.3 45.0 1.0 C A:BCT407 2.7 45.0 1.0 CE1 D:HIS215 3.1 29.4 1.0 CE1 A:HIS272 3.2 41.9 1.0 CE1 D:HIS269 3.2 33.8 1.0 CE1 A:HIS215 3.2 32.5 1.0 CD2 A:HIS215 3.2 32.5 1.0 CD2 D:HIS215 3.3 29.4 1.0 CD2 D:HIS269 3.4 33.8 1.0 CD2 A:HIS272 3.4 41.9 1.0 O1 A:BCT407 4.0 45.0 1.0 ND1 D:HIS215 4.3 29.4 1.0 ND1 A:HIS215 4.3 32.5 1.0 ND1 A:HIS272 4.3 41.9 1.0 ND1 D:HIS269 4.3 33.8 1.0 CG A:HIS215 4.4 32.5 1.0 CG D:HIS215 4.4 29.4 1.0 CG D:HIS269 4.5 33.8 1.0 CG A:HIS272 4.5 41.9 1.0 CG2 A:VAL219 4.5 39.0 1.0 CG2 D:VAL219 4.8 36.6 1.0 OH A:TYR246 4.9 58.5 1.0

Iron binding site 2 out of 4 in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe101 b:95.4 occ:1.00 FE F:HEM101 0.0 95.4 1.0 NC F:HEM101 2.0 95.4 1.0 NA F:HEM101 2.0 95.4 1.0 ND F:HEM101 2.1 95.4 1.0 NB F:HEM101 2.1 95.4 1.0 NE2 E:HIS23 2.1 103.7 1.0 NE2 F:HIS18 2.1 88.3 1.0 CE1 F:HIS18 2.8 88.3 1.0 CD2 E:HIS23 2.8 103.7 1.0 C1D F:HEM101 3.0 95.4 1.0 C4C F:HEM101 3.0 95.4 1.0 C4A F:HEM101 3.0 95.4 1.0 C1B F:HEM101 3.0 95.4 1.0 C1C F:HEM101 3.1 95.4 1.0 C4D F:HEM101 3.1 95.4 1.0 C1A F:HEM101 3.1 95.4 1.0 C4B F:HEM101 3.1 95.4 1.0 CE1 E:HIS23 3.2 103.7 1.0 CD2 F:HIS18 3.3 88.3 1.0 CHD F:HEM101 3.4 95.4 1.0 CHB F:HEM101 3.4 95.4 1.0 CHC F:HEM101 3.4 95.4 1.0 CHA F:HEM101 3.5 95.4 1.0 ND1 F:HIS18 4.0 88.3 1.0 CG E:HIS23 4.0 103.7 1.0 ND1 E:HIS23 4.2 103.7 1.0 C2D F:HEM101 4.2 95.4 1.0 CG F:HIS18 4.2 88.3 1.0 C3D F:HEM101 4.2 95.4 1.0 C3A F:HEM101 4.3 95.4 1.0 C2B F:HEM101 4.3 95.4 1.0 C2C F:HEM101 4.3 95.4 1.0 C3C F:HEM101 4.3 95.4 1.0 C2A F:HEM101 4.3 95.4 1.0 C3B F:HEM101 4.3 95.4 1.0 NE1 F:TRP14 4.5 92.1 1.0

Iron binding site 3 out of 4 in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe409 b:42.4 occ:1.00 NE2 d:HIS215 2.2 29.5 1.0 NE2 a:HIS215 2.2 32.6 1.0 NE2 d:HIS269 2.3 33.2 1.0 NE2 a:HIS272 2.3 42.4 1.0 O3 a:BCT408 2.3 44.8 1.0 O2 a:BCT408 2.3 44.8 1.0 C a:BCT408 2.7 44.8 1.0 CE1 d:HIS215 3.1 29.5 1.0 CE1 a:HIS272 3.2 42.4 1.0 CE1 d:HIS269 3.2 33.2 1.0 CE1 a:HIS215 3.2 32.6 1.0 CD2 a:HIS215 3.2 32.6 1.0 CD2 d:HIS215 3.3 29.5 1.0 CD2 d:HIS269 3.4 33.2 1.0 CD2 a:HIS272 3.4 42.4 1.0 O1 a:BCT408 4.0 44.8 1.0 ND1 d:HIS215 4.3 29.5 1.0 ND1 a:HIS215 4.3 32.6 1.0 ND1 a:HIS272 4.3 42.4 1.0 ND1 d:HIS269 4.3 33.2 1.0 CG a:HIS215 4.4 32.6 1.0 CG d:HIS215 4.4 29.5 1.0 CG d:HIS269 4.5 33.2 1.0 CG a:HIS272 4.5 42.4 1.0 CG2 a:VAL219 4.5 38.2 1.0 CG2 d:VAL219 4.8 36.9 1.0 OH a:TYR246 4.9 57.3 1.0

Iron binding site 4 out of 4 in the The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of LHCB8-C2S2 Psii-Lhcii Supercomplex From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:94.7 occ:1.00 FE f:HEM101 0.0 94.7 1.0 NC f:HEM101 2.0 94.7 1.0 NA f:HEM101 2.0 94.7 1.0 NB f:HEM101 2.1 94.7 1.0 ND f:HEM101 2.1 94.7 1.0 NE2 e:HIS23 2.1 103.0 1.0 NE2 f:HIS18 2.1 87.2 1.0 CE1 f:HIS18 2.8 87.2 1.0 CD2 e:HIS23 2.8 103.0 1.0 C1D f:HEM101 3.0 94.7 1.0 C4C f:HEM101 3.0 94.7 1.0 C4A f:HEM101 3.0 94.7 1.0 C1B f:HEM101 3.1 94.7 1.0 C1C f:HEM101 3.1 94.7 1.0 C4D f:HEM101 3.1 94.7 1.0 C1A f:HEM101 3.1 94.7 1.0 C4B f:HEM101 3.1 94.7 1.0 CE1 e:HIS23 3.2 103.0 1.0 CD2 f:HIS18 3.3 87.2 1.0 CHD f:HEM101 3.4 94.7 1.0 CHB f:HEM101 3.4 94.7 1.0 CHC f:HEM101 3.4 94.7 1.0 CHA f:HEM101 3.5 94.7 1.0 ND1 f:HIS18 4.0 87.2 1.0 CG e:HIS23 4.0 103.0 1.0 ND1 e:HIS23 4.2 103.0 1.0 C2D f:HEM101 4.2 94.7 1.0 CG f:HIS18 4.2 87.2 1.0 C3D f:HEM101 4.2 94.7 1.0 C3A f:HEM101 4.3 94.7 1.0 C3C f:HEM101 4.3 94.7 1.0 C2C f:HEM101 4.3 94.7 1.0 C2B f:HEM101 4.3 94.7 1.0 C2A f:HEM101 4.3 94.7 1.0 C3B f:HEM101 4.3 94.7 1.0 NE1 f:TRP14 4.5 90.8 1.0

R.Caferri, Q.Zhou, L.Dall'osto, A.Amelii, J.Y.Shan, Z.F.Liu, R.Bassi. A Stress-Induced Paralog of LHCB4 Controls the Photosystem II Functional Architecture in Arabidopsis Thaliana To Be Published.