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Iron in PDB 9nb8: Cryo-Em Structure of the CD163/Hpsphb Complex

Other elements in 9nb8:

The structure of Cryo-Em Structure of the CD163/Hpsphb Complex also contains other interesting chemical elements:

Calcium (Ca) 21 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of the CD163/Hpsphb Complex (pdb code 9nb8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of the CD163/Hpsphb Complex, PDB code: 9nb8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9nb8

Go back to Iron Binding Sites List in 9nb8
Iron binding site 1 out of 2 in the Cryo-Em Structure of the CD163/Hpsphb Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the CD163/Hpsphb Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:84.2
occ:1.00
FE D:HEM201 0.0 84.2 1.0
NE2 D:HIS88 1.9 77.2 1.0
NA D:HEM201 2.0 84.2 1.0
NB D:HEM201 2.0 84.2 1.0
NC D:HEM201 2.0 84.2 1.0
ND D:HEM201 2.0 84.2 1.0
CE1 D:HIS88 2.4 77.2 1.0
O1 D:OXY202 2.7 90.0 1.0
C4A D:HEM201 3.0 84.2 1.0
C1A D:HEM201 3.0 84.2 1.0
C1B D:HEM201 3.0 84.2 1.0
C1C D:HEM201 3.1 84.2 1.0
C4C D:HEM201 3.1 84.2 1.0
C4B D:HEM201 3.1 84.2 1.0
C4D D:HEM201 3.1 84.2 1.0
C1D D:HEM201 3.1 84.2 1.0
CD2 D:HIS88 3.1 77.2 1.0
CHB D:HEM201 3.4 84.2 1.0
CHA D:HEM201 3.4 84.2 1.0
CHC D:HEM201 3.4 84.2 1.0
CHD D:HEM201 3.4 84.2 1.0
O2 D:OXY202 3.6 90.0 1.0
ND1 D:HIS88 3.7 77.2 1.0
CG D:HIS88 4.0 77.2 1.0
NE2 D:HIS59 4.2 89.6 1.0
C3A D:HEM201 4.2 84.2 1.0
C2A D:HEM201 4.2 84.2 1.0
C2B D:HEM201 4.3 84.2 1.0
C2C D:HEM201 4.3 84.2 1.0
C3C D:HEM201 4.3 84.2 1.0
C3B D:HEM201 4.3 84.2 1.0
C3D D:HEM201 4.3 84.2 1.0
C2D D:HEM201 4.3 84.2 1.0
CE1 D:HIS59 4.7 89.6 1.0
CG2 D:VAL63 4.8 78.6 1.0

Iron binding site 2 out of 2 in 9nb8

Go back to Iron Binding Sites List in 9nb8
Iron binding site 2 out of 2 in the Cryo-Em Structure of the CD163/Hpsphb Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the CD163/Hpsphb Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:134.0
occ:1.00
FE E:HEM201 0.0 134.0 1.0
NA E:HEM201 2.0 134.0 1.0
NB E:HEM201 2.0 134.0 1.0
ND E:HEM201 2.1 134.0 1.0
NC E:HEM201 2.1 134.0 1.0
O1 E:OXY202 2.4 127.3 1.0
O2 E:OXY202 2.5 127.3 1.0
C4A E:HEM201 3.0 134.0 1.0
C1A E:HEM201 3.0 134.0 1.0
C4C E:HEM201 3.0 134.0 1.0
C1C E:HEM201 3.1 134.0 1.0
C1D E:HEM201 3.1 134.0 1.0
C1B E:HEM201 3.1 134.0 1.0
C4B E:HEM201 3.1 134.0 1.0
C4D E:HEM201 3.1 134.0 1.0
CHD E:HEM201 3.4 134.0 1.0
CHB E:HEM201 3.4 134.0 1.0
CHA E:HEM201 3.4 134.0 1.0
CHC E:HEM201 3.4 134.0 1.0
NE2 E:HIS93 3.9 148.4 1.0
CD2 E:HIS93 4.0 148.4 1.0
CD1 E:LEU97 4.1 145.3 1.0
C3A E:HEM201 4.2 134.0 1.0
C2A E:HEM201 4.2 134.0 1.0
C2C E:HEM201 4.2 134.0 1.0
C3C E:HEM201 4.2 134.0 1.0
C2D E:HEM201 4.3 134.0 1.0
C3D E:HEM201 4.3 134.0 1.0
C2B E:HEM201 4.3 134.0 1.0
C3B E:HEM201 4.3 134.0 1.0
CG2 E:VAL68 4.6 125.3 1.0
CE1 E:HIS93 4.9 148.4 1.0

Reference:

C.-S.Huang, H.Wang, J.B.R.White, O.Degtjarik, C.Huynh, K.Brannstrom, M.T.Horn, S.P.Muench, W.S.Somers, J.Chaparro-Riggers, L.Lin, L.Mosyak. Structural Elucidation of the Haptoglobin-Hemoglobin Clearance Mechanism By Macrophage Scavenger Receptor CD163 To Be Published.
Page generated: Fri Aug 8 07:50:01 2025

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