Iron in PDB 19hc: Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
Protein crystallography data
The structure of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774, PDB code: 19hc
was solved by
P.M.Matias,
R.Coelho,
I.A.C.Pereira,
A.V.Coelho,
A.W.Thompson,
L.Sieker,
J.L.Gall,
M.A.Carrondo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
24.00 /
1.80
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
60.380,
106.070,
80.620,
90.00,
103.50,
90.00
|
|
R / Rfree (%)
|
16.9 /
n/a
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
(pdb code 19hc). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774, PDB code: 19hc:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 1 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:13.1
occ:1.00
|
FE
|
A:HEM301
|
0.0
|
13.1
|
1.0
|
|
ND
|
A:HEM301
|
2.0
|
10.5
|
1.0
|
|
NB
|
A:HEM301
|
2.0
|
12.4
|
1.0
|
|
NA
|
A:HEM301
|
2.0
|
14.1
|
1.0
|
|
NE2
|
A:HIS37
|
2.0
|
9.9
|
1.0
|
|
NC
|
A:HEM301
|
2.0
|
14.7
|
1.0
|
|
NE2
|
A:HIS51
|
2.0
|
9.8
|
1.0
|
|
CE1
|
A:HIS51
|
2.9
|
12.8
|
1.0
|
|
CE1
|
A:HIS37
|
3.0
|
10.6
|
1.0
|
|
CD2
|
A:HIS37
|
3.0
|
12.3
|
1.0
|
|
C1B
|
A:HEM301
|
3.0
|
12.4
|
1.0
|
|
C4D
|
A:HEM301
|
3.0
|
13.4
|
1.0
|
|
C4B
|
A:HEM301
|
3.0
|
11.9
|
1.0
|
|
C1C
|
A:HEM301
|
3.0
|
12.6
|
1.0
|
|
C4A
|
A:HEM301
|
3.0
|
12.6
|
1.0
|
|
C1D
|
A:HEM301
|
3.0
|
10.9
|
1.0
|
|
C1A
|
A:HEM301
|
3.1
|
11.8
|
1.0
|
|
CD2
|
A:HIS51
|
3.1
|
12.3
|
1.0
|
|
C4C
|
A:HEM301
|
3.1
|
10.3
|
1.0
|
|
CHB
|
A:HEM301
|
3.4
|
11.9
|
1.0
|
|
CHD
|
A:HEM301
|
3.4
|
11.2
|
1.0
|
|
CHA
|
A:HEM301
|
3.4
|
12.7
|
1.0
|
|
CHC
|
A:HEM301
|
3.4
|
11.6
|
1.0
|
|
ND1
|
A:HIS51
|
4.1
|
12.9
|
1.0
|
|
ND1
|
A:HIS37
|
4.1
|
12.4
|
1.0
|
|
CG
|
A:HIS37
|
4.1
|
9.6
|
1.0
|
|
CG
|
A:HIS51
|
4.2
|
12.6
|
1.0
|
|
C2B
|
A:HEM301
|
4.3
|
13.4
|
1.0
|
|
C2A
|
A:HEM301
|
4.3
|
12.7
|
1.0
|
|
C2D
|
A:HEM301
|
4.3
|
14.9
|
1.0
|
|
C3D
|
A:HEM301
|
4.3
|
15.3
|
1.0
|
|
C3B
|
A:HEM301
|
4.3
|
16.1
|
1.0
|
|
C2C
|
A:HEM301
|
4.3
|
9.8
|
1.0
|
|
C3A
|
A:HEM301
|
4.3
|
12.2
|
1.0
|
|
C3C
|
A:HEM301
|
4.3
|
9.9
|
1.0
|
|
CB
|
A:ALA10
|
4.8
|
14.6
|
1.0
|
|
Iron binding site 2 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 2 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:16.2
occ:1.00
|
FE
|
A:HEM302
|
0.0
|
16.2
|
1.0
|
|
NC
|
A:HEM302
|
2.0
|
16.8
|
1.0
|
|
ND
|
A:HEM302
|
2.0
|
17.1
|
1.0
|
|
NA
|
A:HEM302
|
2.0
|
14.4
|
1.0
|
|
NB
|
A:HEM302
|
2.0
|
14.4
|
1.0
|
|
NE2
|
A:HIS63
|
2.0
|
14.4
|
1.0
|
|
NE2
|
A:HIS52
|
2.0
|
14.1
|
1.0
|
|
CE1
|
A:HIS63
|
3.0
|
12.3
|
1.0
|
|
CE1
|
A:HIS52
|
3.0
|
16.6
|
1.0
|
|
C1D
|
A:HEM302
|
3.0
|
22.1
|
1.0
|
|
C4C
|
A:HEM302
|
3.0
|
16.5
|
1.0
|
|
C4A
|
A:HEM302
|
3.0
|
13.1
|
1.0
|
|
C1C
|
A:HEM302
|
3.0
|
17.0
|
1.0
|
|
C1B
|
A:HEM302
|
3.0
|
14.2
|
1.0
|
|
C1A
|
A:HEM302
|
3.0
|
14.6
|
1.0
|
|
CD2
|
A:HIS63
|
3.0
|
14.2
|
1.0
|
|
C4D
|
A:HEM302
|
3.0
|
18.3
|
1.0
|
|
C4B
|
A:HEM302
|
3.1
|
14.6
|
1.0
|
|
CD2
|
A:HIS52
|
3.1
|
11.2
|
1.0
|
|
CHD
|
A:HEM302
|
3.4
|
16.5
|
1.0
|
|
CHB
|
A:HEM302
|
3.4
|
10.4
|
1.0
|
|
CHC
|
A:HEM302
|
3.4
|
16.6
|
1.0
|
|
CHA
|
A:HEM302
|
3.4
|
18.1
|
1.0
|
|
ND1
|
A:HIS63
|
4.1
|
12.1
|
1.0
|
|
ND1
|
A:HIS52
|
4.1
|
14.7
|
1.0
|
|
CG
|
A:HIS63
|
4.2
|
13.7
|
1.0
|
|
CG
|
A:HIS52
|
4.2
|
12.8
|
1.0
|
|
C3C
|
A:HEM302
|
4.2
|
15.6
|
1.0
|
|
C2C
|
A:HEM302
|
4.3
|
16.7
|
1.0
|
|
C2A
|
A:HEM302
|
4.3
|
13.1
|
1.0
|
|
C2D
|
A:HEM302
|
4.3
|
23.5
|
1.0
|
|
C2B
|
A:HEM302
|
4.3
|
17.1
|
1.0
|
|
C3A
|
A:HEM302
|
4.3
|
16.9
|
1.0
|
|
C3D
|
A:HEM302
|
4.3
|
20.0
|
1.0
|
|
C3B
|
A:HEM302
|
4.3
|
12.4
|
1.0
|
|
Iron binding site 3 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 3 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:11.8
occ:1.00
|
FE
|
A:HEM303
|
0.0
|
11.8
|
1.0
|
|
ND
|
A:HEM303
|
2.0
|
13.8
|
1.0
|
|
NC
|
A:HEM303
|
2.0
|
11.4
|
1.0
|
|
NB
|
A:HEM303
|
2.0
|
11.1
|
1.0
|
|
NA
|
A:HEM303
|
2.0
|
12.5
|
1.0
|
|
NE2
|
A:HIS40
|
2.0
|
10.3
|
1.0
|
|
NE2
|
A:HIS101
|
2.0
|
9.0
|
1.0
|
|
CE1
|
A:HIS101
|
3.0
|
14.2
|
1.0
|
|
CE1
|
A:HIS40
|
3.0
|
10.1
|
1.0
|
|
CD2
|
A:HIS40
|
3.0
|
13.2
|
1.0
|
|
C4D
|
A:HEM303
|
3.0
|
10.3
|
1.0
|
|
C1C
|
A:HEM303
|
3.0
|
11.0
|
1.0
|
|
C1D
|
A:HEM303
|
3.0
|
10.3
|
1.0
|
|
C1A
|
A:HEM303
|
3.0
|
10.6
|
1.0
|
|
C4B
|
A:HEM303
|
3.0
|
9.8
|
1.0
|
|
C4A
|
A:HEM303
|
3.1
|
8.6
|
1.0
|
|
CD2
|
A:HIS101
|
3.1
|
10.5
|
1.0
|
|
C1B
|
A:HEM303
|
3.1
|
8.1
|
1.0
|
|
C4C
|
A:HEM303
|
3.1
|
9.0
|
1.0
|
|
CHC
|
A:HEM303
|
3.4
|
9.8
|
1.0
|
|
CHA
|
A:HEM303
|
3.4
|
10.0
|
1.0
|
|
CHB
|
A:HEM303
|
3.4
|
6.9
|
1.0
|
|
CHD
|
A:HEM303
|
3.4
|
10.5
|
1.0
|
|
ND1
|
A:HIS101
|
4.1
|
12.6
|
1.0
|
|
ND1
|
A:HIS40
|
4.1
|
10.9
|
1.0
|
|
CG
|
A:HIS40
|
4.2
|
10.2
|
1.0
|
|
CG
|
A:HIS101
|
4.2
|
10.8
|
1.0
|
|
C3D
|
A:HEM303
|
4.2
|
9.9
|
1.0
|
|
C2D
|
A:HEM303
|
4.2
|
8.2
|
1.0
|
|
C2A
|
A:HEM303
|
4.3
|
10.5
|
1.0
|
|
C3A
|
A:HEM303
|
4.3
|
10.3
|
1.0
|
|
C2C
|
A:HEM303
|
4.3
|
10.1
|
1.0
|
|
C2B
|
A:HEM303
|
4.3
|
9.6
|
1.0
|
|
C3B
|
A:HEM303
|
4.3
|
8.9
|
1.0
|
|
C3C
|
A:HEM303
|
4.3
|
11.8
|
1.0
|
|
CE1
|
A:PHE35
|
4.9
|
13.8
|
1.0
|
|
CD1
|
A:LEU213
|
4.9
|
14.1
|
1.0
|
|
Iron binding site 4 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 4 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe304
b:11.8
occ:1.00
|
FE
|
A:HEM304
|
0.0
|
11.8
|
1.0
|
|
NC
|
A:HEM304
|
2.0
|
13.1
|
1.0
|
|
ND
|
A:HEM304
|
2.0
|
11.7
|
1.0
|
|
NB
|
A:HEM304
|
2.0
|
11.4
|
1.0
|
|
NA
|
A:HEM304
|
2.0
|
12.3
|
1.0
|
|
NE2
|
A:HIS218
|
2.0
|
9.1
|
1.0
|
|
NE2
|
A:HIS115
|
2.0
|
8.9
|
1.0
|
|
CE1
|
A:HIS218
|
2.9
|
10.0
|
1.0
|
|
CE1
|
A:HIS115
|
3.0
|
9.0
|
1.0
|
|
C4B
|
A:HEM304
|
3.0
|
8.7
|
1.0
|
|
C4A
|
A:HEM304
|
3.0
|
11.4
|
1.0
|
|
C1D
|
A:HEM304
|
3.0
|
9.9
|
1.0
|
|
C4C
|
A:HEM304
|
3.0
|
10.6
|
1.0
|
|
C1C
|
A:HEM304
|
3.0
|
8.5
|
1.0
|
|
C1A
|
A:HEM304
|
3.0
|
12.6
|
1.0
|
|
C4D
|
A:HEM304
|
3.0
|
9.6
|
1.0
|
|
C1B
|
A:HEM304
|
3.0
|
10.1
|
1.0
|
|
CD2
|
A:HIS218
|
3.1
|
8.7
|
1.0
|
|
CD2
|
A:HIS115
|
3.1
|
9.8
|
1.0
|
|
CHC
|
A:HEM304
|
3.4
|
6.4
|
1.0
|
|
CHD
|
A:HEM304
|
3.4
|
8.2
|
1.0
|
|
CHB
|
A:HEM304
|
3.4
|
8.0
|
1.0
|
|
CHA
|
A:HEM304
|
3.5
|
8.9
|
1.0
|
|
ND1
|
A:HIS218
|
4.1
|
8.1
|
1.0
|
|
ND1
|
A:HIS115
|
4.1
|
7.8
|
1.0
|
|
CG
|
A:HIS218
|
4.2
|
9.9
|
1.0
|
|
CG
|
A:HIS115
|
4.2
|
9.7
|
1.0
|
|
C2D
|
A:HEM304
|
4.3
|
10.7
|
1.0
|
|
C3B
|
A:HEM304
|
4.3
|
12.2
|
1.0
|
|
C3D
|
A:HEM304
|
4.3
|
10.7
|
1.0
|
|
C3A
|
A:HEM304
|
4.3
|
12.6
|
1.0
|
|
C2C
|
A:HEM304
|
4.3
|
9.2
|
1.0
|
|
C3C
|
A:HEM304
|
4.3
|
8.5
|
1.0
|
|
C2B
|
A:HEM304
|
4.3
|
12.9
|
1.0
|
|
C2A
|
A:HEM304
|
4.3
|
10.7
|
1.0
|
|
Iron binding site 5 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 5 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe305
b:12.8
occ:1.00
|
FE
|
A:HEM305
|
0.0
|
12.8
|
1.0
|
|
NA
|
A:HEM305
|
2.0
|
13.4
|
1.0
|
|
NB
|
A:HEM305
|
2.0
|
10.2
|
1.0
|
|
NC
|
A:HEM305
|
2.0
|
12.7
|
1.0
|
|
ND
|
A:HEM305
|
2.0
|
12.9
|
1.0
|
|
NE2
|
A:HIS131
|
2.0
|
11.6
|
1.0
|
|
NE2
|
A:HIS81
|
2.0
|
13.5
|
1.0
|
|
CE1
|
A:HIS131
|
2.9
|
9.7
|
1.0
|
|
CE1
|
A:HIS81
|
3.0
|
16.9
|
1.0
|
|
C4A
|
A:HEM305
|
3.0
|
13.9
|
1.0
|
|
C1B
|
A:HEM305
|
3.0
|
12.7
|
1.0
|
|
C1C
|
A:HEM305
|
3.0
|
10.7
|
1.0
|
|
C4D
|
A:HEM305
|
3.0
|
14.8
|
1.0
|
|
C1A
|
A:HEM305
|
3.0
|
12.0
|
1.0
|
|
C4B
|
A:HEM305
|
3.0
|
11.4
|
1.0
|
|
C1D
|
A:HEM305
|
3.0
|
9.9
|
1.0
|
|
C4C
|
A:HEM305
|
3.1
|
9.8
|
1.0
|
|
CD2
|
A:HIS81
|
3.1
|
10.0
|
1.0
|
|
CD2
|
A:HIS131
|
3.1
|
13.6
|
1.0
|
|
CHB
|
A:HEM305
|
3.4
|
11.9
|
1.0
|
|
CHA
|
A:HEM305
|
3.4
|
13.2
|
1.0
|
|
CHD
|
A:HEM305
|
3.4
|
12.0
|
1.0
|
|
CHC
|
A:HEM305
|
3.4
|
9.9
|
1.0
|
|
ND1
|
A:HIS131
|
4.1
|
10.4
|
1.0
|
|
ND1
|
A:HIS81
|
4.1
|
16.6
|
1.0
|
|
CG
|
A:HIS131
|
4.2
|
11.0
|
1.0
|
|
CG
|
A:HIS81
|
4.2
|
12.8
|
1.0
|
|
C3D
|
A:HEM305
|
4.2
|
14.8
|
1.0
|
|
C2A
|
A:HEM305
|
4.2
|
11.9
|
1.0
|
|
C3A
|
A:HEM305
|
4.2
|
14.8
|
1.0
|
|
C2D
|
A:HEM305
|
4.3
|
12.8
|
1.0
|
|
C2B
|
A:HEM305
|
4.3
|
13.8
|
1.0
|
|
C2C
|
A:HEM305
|
4.3
|
10.9
|
1.0
|
|
C3B
|
A:HEM305
|
4.3
|
13.2
|
1.0
|
|
C3C
|
A:HEM305
|
4.3
|
10.3
|
1.0
|
|
Iron binding site 6 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 6 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe306
b:11.5
occ:1.00
|
FE
|
A:HEM306
|
0.0
|
11.5
|
1.0
|
|
NE2
|
A:HIS197
|
2.0
|
6.8
|
1.0
|
|
NA
|
A:HEM306
|
2.0
|
9.2
|
1.0
|
|
ND
|
A:HEM306
|
2.0
|
11.0
|
1.0
|
|
NC
|
A:HEM306
|
2.0
|
8.4
|
1.0
|
|
NB
|
A:HEM306
|
2.0
|
11.5
|
1.0
|
|
NE2
|
A:HIS229
|
2.0
|
12.5
|
1.0
|
|
CE1
|
A:HIS197
|
3.0
|
10.0
|
1.0
|
|
CD2
|
A:HIS197
|
3.0
|
9.0
|
1.0
|
|
CE1
|
A:HIS229
|
3.0
|
13.2
|
1.0
|
|
C4C
|
A:HEM306
|
3.0
|
9.0
|
1.0
|
|
C4A
|
A:HEM306
|
3.0
|
12.4
|
1.0
|
|
C1D
|
A:HEM306
|
3.0
|
9.6
|
1.0
|
|
C4D
|
A:HEM306
|
3.0
|
7.2
|
1.0
|
|
C1B
|
A:HEM306
|
3.0
|
10.5
|
1.0
|
|
C1C
|
A:HEM306
|
3.0
|
11.4
|
1.0
|
|
C1A
|
A:HEM306
|
3.0
|
14.9
|
1.0
|
|
C4B
|
A:HEM306
|
3.0
|
10.0
|
1.0
|
|
CD2
|
A:HIS229
|
3.0
|
11.7
|
1.0
|
|
CHB
|
A:HEM306
|
3.4
|
10.7
|
1.0
|
|
CHD
|
A:HEM306
|
3.4
|
8.3
|
1.0
|
|
CHC
|
A:HEM306
|
3.4
|
12.0
|
1.0
|
|
CHA
|
A:HEM306
|
3.4
|
10.7
|
1.0
|
|
ND1
|
A:HIS197
|
4.1
|
11.1
|
1.0
|
|
CG
|
A:HIS197
|
4.1
|
13.1
|
1.0
|
|
ND1
|
A:HIS229
|
4.1
|
11.9
|
1.0
|
|
CG
|
A:HIS229
|
4.2
|
14.3
|
1.0
|
|
C3A
|
A:HEM306
|
4.2
|
12.1
|
1.0
|
|
C2A
|
A:HEM306
|
4.3
|
14.7
|
1.0
|
|
C3D
|
A:HEM306
|
4.3
|
11.4
|
1.0
|
|
C2D
|
A:HEM306
|
4.3
|
11.5
|
1.0
|
|
C2B
|
A:HEM306
|
4.3
|
10.1
|
1.0
|
|
C3C
|
A:HEM306
|
4.3
|
8.2
|
1.0
|
|
C2C
|
A:HEM306
|
4.3
|
11.7
|
1.0
|
|
C3B
|
A:HEM306
|
4.3
|
10.1
|
1.0
|
|
Iron binding site 7 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 7 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe307
b:11.4
occ:1.00
|
FE
|
A:HEM307
|
0.0
|
11.4
|
1.0
|
|
NA
|
A:HEM307
|
2.0
|
8.6
|
1.0
|
|
NE2
|
A:HIS230
|
2.0
|
9.5
|
1.0
|
|
NC
|
A:HEM307
|
2.0
|
9.2
|
1.0
|
|
NB
|
A:HEM307
|
2.0
|
12.0
|
1.0
|
|
ND
|
A:HEM307
|
2.0
|
12.8
|
1.0
|
|
NE2
|
A:HIS245
|
2.0
|
12.2
|
1.0
|
|
CE1
|
A:HIS245
|
3.0
|
9.2
|
1.0
|
|
CE1
|
A:HIS230
|
3.0
|
12.9
|
1.0
|
|
C4A
|
A:HEM307
|
3.0
|
7.8
|
1.0
|
|
C1C
|
A:HEM307
|
3.0
|
9.8
|
1.0
|
|
C1A
|
A:HEM307
|
3.0
|
12.1
|
1.0
|
|
C1B
|
A:HEM307
|
3.0
|
10.3
|
1.0
|
|
CD2
|
A:HIS230
|
3.0
|
10.2
|
1.0
|
|
C1D
|
A:HEM307
|
3.0
|
12.8
|
1.0
|
|
C4D
|
A:HEM307
|
3.1
|
13.2
|
1.0
|
|
C4B
|
A:HEM307
|
3.1
|
6.8
|
1.0
|
|
CD2
|
A:HIS245
|
3.1
|
14.4
|
1.0
|
|
C4C
|
A:HEM307
|
3.1
|
8.0
|
1.0
|
|
CHB
|
A:HEM307
|
3.4
|
8.9
|
1.0
|
|
CHC
|
A:HEM307
|
3.4
|
8.9
|
1.0
|
|
CHD
|
A:HEM307
|
3.4
|
9.5
|
1.0
|
|
CHA
|
A:HEM307
|
3.4
|
13.5
|
1.0
|
|
ND1
|
A:HIS245
|
4.1
|
10.2
|
1.0
|
|
ND1
|
A:HIS230
|
4.1
|
11.1
|
1.0
|
|
CG
|
A:HIS245
|
4.2
|
7.6
|
1.0
|
|
CG
|
A:HIS230
|
4.2
|
10.8
|
1.0
|
|
C3A
|
A:HEM307
|
4.2
|
11.2
|
1.0
|
|
C2A
|
A:HEM307
|
4.2
|
12.9
|
1.0
|
|
C2C
|
A:HEM307
|
4.2
|
10.7
|
1.0
|
|
C2B
|
A:HEM307
|
4.3
|
10.4
|
1.0
|
|
C3D
|
A:HEM307
|
4.3
|
12.2
|
1.0
|
|
C2D
|
A:HEM307
|
4.3
|
12.8
|
1.0
|
|
C3C
|
A:HEM307
|
4.3
|
8.0
|
1.0
|
|
C3B
|
A:HEM307
|
4.3
|
7.7
|
1.0
|
|
NH1
|
A:ARG231
|
4.4
|
16.5
|
1.0
|
|
Iron binding site 8 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 8 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe308
b:12.5
occ:1.00
|
FE
|
A:HEM308
|
0.0
|
12.5
|
1.0
|
|
ND
|
A:HEM308
|
2.0
|
13.4
|
1.0
|
|
NC
|
A:HEM308
|
2.0
|
9.1
|
1.0
|
|
NB
|
A:HEM308
|
2.0
|
10.5
|
1.0
|
|
NA
|
A:HEM308
|
2.0
|
15.2
|
1.0
|
|
NE2
|
A:HIS200
|
2.0
|
13.3
|
1.0
|
|
NE2
|
A:HIS271
|
2.0
|
13.4
|
1.0
|
|
CD2
|
A:HIS200
|
3.0
|
11.8
|
1.0
|
|
CE1
|
A:HIS271
|
3.0
|
10.9
|
1.0
|
|
C4D
|
A:HEM308
|
3.0
|
13.6
|
1.0
|
|
C1C
|
A:HEM308
|
3.0
|
8.9
|
1.0
|
|
CE1
|
A:HIS200
|
3.0
|
12.3
|
1.0
|
|
C4B
|
A:HEM308
|
3.0
|
9.1
|
1.0
|
|
C1A
|
A:HEM308
|
3.0
|
15.2
|
1.0
|
|
C1D
|
A:HEM308
|
3.0
|
12.3
|
1.0
|
|
CD2
|
A:HIS271
|
3.1
|
11.1
|
1.0
|
|
C4C
|
A:HEM308
|
3.1
|
9.8
|
1.0
|
|
C1B
|
A:HEM308
|
3.1
|
14.5
|
1.0
|
|
C4A
|
A:HEM308
|
3.1
|
12.2
|
1.0
|
|
CHC
|
A:HEM308
|
3.4
|
11.8
|
1.0
|
|
CHA
|
A:HEM308
|
3.4
|
14.7
|
1.0
|
|
CHD
|
A:HEM308
|
3.4
|
11.7
|
1.0
|
|
CHB
|
A:HEM308
|
3.5
|
10.7
|
1.0
|
|
ND1
|
A:HIS200
|
4.1
|
11.2
|
1.0
|
|
ND1
|
A:HIS271
|
4.1
|
11.8
|
1.0
|
|
CG
|
A:HIS200
|
4.1
|
12.2
|
1.0
|
|
CG
|
A:HIS271
|
4.2
|
12.8
|
1.0
|
|
C3D
|
A:HEM308
|
4.2
|
14.0
|
1.0
|
|
C2D
|
A:HEM308
|
4.2
|
13.4
|
1.0
|
|
C2C
|
A:HEM308
|
4.3
|
9.6
|
1.0
|
|
C2A
|
A:HEM308
|
4.3
|
14.1
|
1.0
|
|
C3A
|
A:HEM308
|
4.3
|
11.1
|
1.0
|
|
C2B
|
A:HEM308
|
4.3
|
13.2
|
1.0
|
|
C3C
|
A:HEM308
|
4.3
|
11.7
|
1.0
|
|
C3B
|
A:HEM308
|
4.3
|
11.2
|
1.0
|
|
CE1
|
A:PHE195
|
4.8
|
9.2
|
1.0
|
|
Iron binding site 9 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 9 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe309
b:14.0
occ:1.00
|
FE
|
A:HEM309
|
0.0
|
14.0
|
1.0
|
|
NA
|
A:HEM309
|
2.0
|
15.1
|
1.0
|
|
ND
|
A:HEM309
|
2.0
|
13.4
|
1.0
|
|
NB
|
A:HEM309
|
2.0
|
12.5
|
1.0
|
|
NC
|
A:HEM309
|
2.0
|
13.3
|
1.0
|
|
NE2
|
A:HIS264
|
2.0
|
12.8
|
1.0
|
|
NE2
|
A:HIS288
|
2.0
|
13.6
|
1.0
|
|
CE1
|
A:HIS264
|
3.0
|
16.2
|
1.0
|
|
CE1
|
A:HIS288
|
3.0
|
13.0
|
1.0
|
|
C4C
|
A:HEM309
|
3.0
|
10.4
|
1.0
|
|
CD2
|
A:HIS288
|
3.0
|
12.4
|
1.0
|
|
C1B
|
A:HEM309
|
3.0
|
12.0
|
1.0
|
|
C4D
|
A:HEM309
|
3.0
|
12.9
|
1.0
|
|
C1A
|
A:HEM309
|
3.0
|
13.4
|
1.0
|
|
C4B
|
A:HEM309
|
3.0
|
11.4
|
1.0
|
|
C1D
|
A:HEM309
|
3.0
|
11.5
|
1.0
|
|
CD2
|
A:HIS264
|
3.0
|
13.6
|
1.0
|
|
C4A
|
A:HEM309
|
3.1
|
16.2
|
1.0
|
|
C1C
|
A:HEM309
|
3.1
|
13.0
|
1.0
|
|
CHD
|
A:HEM309
|
3.4
|
11.7
|
1.0
|
|
CHA
|
A:HEM309
|
3.4
|
10.0
|
1.0
|
|
CHC
|
A:HEM309
|
3.5
|
8.5
|
1.0
|
|
CHB
|
A:HEM309
|
3.5
|
12.4
|
1.0
|
|
ND1
|
A:HIS264
|
4.1
|
16.6
|
1.0
|
|
ND1
|
A:HIS288
|
4.1
|
12.2
|
1.0
|
|
CG
|
A:HIS288
|
4.1
|
16.1
|
1.0
|
|
CG
|
A:HIS264
|
4.2
|
14.0
|
1.0
|
|
C2B
|
A:HEM309
|
4.2
|
14.2
|
1.0
|
|
C3D
|
A:HEM309
|
4.3
|
11.6
|
1.0
|
|
C2A
|
A:HEM309
|
4.3
|
16.1
|
1.0
|
|
C3C
|
A:HEM309
|
4.3
|
13.3
|
1.0
|
|
C2D
|
A:HEM309
|
4.3
|
8.4
|
1.0
|
|
C3B
|
A:HEM309
|
4.3
|
11.4
|
1.0
|
|
C2C
|
A:HEM309
|
4.3
|
15.7
|
1.0
|
|
C3A
|
A:HEM309
|
4.3
|
19.5
|
1.0
|
|
Iron binding site 10 out
of 18 in 19hc
Go back to
Iron Binding Sites List in 19hc
Iron binding site 10 out
of 18 in the Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774
 Mono view
 Stereo pair view
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A full contact list of Iron with other atoms in the Fe binding
site number 10 of Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:19.4
occ:1.00
|
FE
|
B:HEM301
|
0.0
|
19.4
|
1.0
|
|
NE2
|
B:HIS37
|
2.0
|
19.1
|
1.0
|
|
NB
|
B:HEM301
|
2.0
|
17.6
|
1.0
|
|
NC
|
B:HEM301
|
2.0
|
21.8
|
1.0
|
|
ND
|
B:HEM301
|
2.0
|
13.7
|
1.0
|
|
NE2
|
B:HIS51
|
2.0
|
16.7
|
1.0
|
|
NA
|
B:HEM301
|
2.0
|
22.9
|
1.0
|
|
CE1
|
B:HIS51
|
2.9
|
16.7
|
1.0
|
|
CE1
|
B:HIS37
|
3.0
|
20.2
|
1.0
|
|
C1D
|
B:HEM301
|
3.0
|
13.0
|
1.0
|
|
CD2
|
B:HIS37
|
3.0
|
17.4
|
1.0
|
|
C1B
|
B:HEM301
|
3.0
|
18.1
|
1.0
|
|
C4B
|
B:HEM301
|
3.0
|
15.7
|
1.0
|
|
C4D
|
B:HEM301
|
3.0
|
14.4
|
1.0
|
|
C4C
|
B:HEM301
|
3.0
|
19.2
|
1.0
|
|
C1A
|
B:HEM301
|
3.0
|
16.1
|
1.0
|
|
C1C
|
B:HEM301
|
3.1
|
20.1
|
1.0
|
|
C4A
|
B:HEM301
|
3.1
|
20.0
|
1.0
|
|
CD2
|
B:HIS51
|
3.1
|
17.2
|
1.0
|
|
CHD
|
B:HEM301
|
3.4
|
15.5
|
1.0
|
|
CHC
|
B:HEM301
|
3.4
|
18.6
|
1.0
|
|
CHB
|
B:HEM301
|
3.4
|
18.0
|
1.0
|
|
CHA
|
B:HEM301
|
3.5
|
17.2
|
1.0
|
|
ND1
|
B:HIS51
|
4.1
|
18.4
|
1.0
|
|
ND1
|
B:HIS37
|
4.1
|
18.0
|
1.0
|
|
CG
|
B:HIS37
|
4.2
|
19.0
|
1.0
|
|
CG
|
B:HIS51
|
4.2
|
15.8
|
1.0
|
|
C2B
|
B:HEM301
|
4.2
|
18.8
|
1.0
|
|
C2D
|
B:HEM301
|
4.2
|
15.8
|
1.0
|
|
C3D
|
B:HEM301
|
4.3
|
16.5
|
1.0
|
|
C3B
|
B:HEM301
|
4.3
|
14.6
|
1.0
|
|
C2C
|
B:HEM301
|
4.3
|
20.5
|
1.0
|
|
C3C
|
B:HEM301
|
4.3
|
18.8
|
1.0
|
|
C3A
|
B:HEM301
|
4.3
|
19.1
|
1.0
|
|
C2A
|
B:HEM301
|
4.3
|
13.8
|
1.0
|
|
CB
|
B:ALA10
|
4.7
|
18.1
|
1.0
|
|
Reference:
P.M.Matias,
R.Coelho,
I.A.Pereira,
A.V.Coelho,
A.W.Thompson,
L.C.Sieker,
J.L.Gall,
M.A.Carrondo.
The Primary and Three-Dimensional Structures of A Nine-Haem Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774 Reveal A New Member of the Hmc Family. Structure Fold.Des. V. 7 119 1999.
ISSN: ISSN 0969-2126
PubMed: 10368280
DOI: 10.1016/S0969-2126(99)80019-7
Page generated: Sun Dec 13 14:01:21 2020
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