Iron in PDB 1aor: Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Protein crystallography data
The structure of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase, PDB code: 1aor
was solved by
M.K.Chan,
S.Mukund,
A.Kletzin,
M.W.W.Adams,
D.C.Rees,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.939,
108.332,
159.792,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.5 /
n/a
|
Other elements in 1aor:
The structure of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
(pdb code 1aor). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 9 binding sites of Iron where determined in the
Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase, PDB code: 1aor:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Iron binding site 1 out
of 9 in 1aor
Go back to
Iron Binding Sites List in 1aor
Iron binding site 1 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe606
b:17.5
occ:1.00
|
OE1
|
A:GLU332
|
2.0
|
13.6
|
1.0
|
OE1
|
B:GLU332
|
2.0
|
15.5
|
1.0
|
NE2
|
B:HIS383
|
2.1
|
13.8
|
1.0
|
NE2
|
A:HIS383
|
2.1
|
14.6
|
1.0
|
CD
|
A:GLU332
|
2.7
|
15.7
|
1.0
|
OE2
|
A:GLU332
|
2.7
|
15.7
|
1.0
|
CD
|
B:GLU332
|
2.7
|
14.9
|
1.0
|
OE2
|
B:GLU332
|
2.7
|
18.6
|
1.0
|
CD2
|
B:HIS383
|
3.0
|
13.6
|
1.0
|
CD2
|
A:HIS383
|
3.1
|
17.1
|
1.0
|
CE1
|
A:HIS383
|
3.1
|
15.7
|
1.0
|
CE1
|
B:HIS383
|
3.1
|
10.9
|
1.0
|
CG
|
A:GLU332
|
4.2
|
11.4
|
1.0
|
CG
|
B:GLU332
|
4.2
|
11.9
|
1.0
|
CG
|
B:HIS383
|
4.2
|
15.5
|
1.0
|
O
|
A:HOH5018
|
4.2
|
38.8
|
1.0
|
ND1
|
B:HIS383
|
4.2
|
12.4
|
1.0
|
CG
|
A:HIS383
|
4.2
|
18.3
|
1.0
|
ND1
|
A:HIS383
|
4.2
|
15.7
|
1.0
|
OG
|
A:SER329
|
4.3
|
15.5
|
1.0
|
OG
|
B:SER329
|
4.3
|
16.3
|
1.0
|
O
|
B:HOH5044
|
4.5
|
36.6
|
1.0
|
CA
|
A:SER329
|
4.7
|
10.9
|
1.0
|
CB
|
A:GLU332
|
4.7
|
13.1
|
1.0
|
CB
|
B:GLU332
|
4.7
|
12.7
|
1.0
|
CA
|
B:SER329
|
4.8
|
15.9
|
1.0
|
CG2
|
A:THR303
|
4.9
|
17.9
|
1.0
|
CB
|
A:SER329
|
5.0
|
12.7
|
1.0
|
|
Iron binding site 2 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 2 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:24.1
occ:1.00
|
FE1
|
A:SF4608
|
0.0
|
24.1
|
1.0
|
S4
|
A:SF4608
|
2.3
|
17.4
|
1.0
|
S2
|
A:SF4608
|
2.3
|
23.8
|
1.0
|
S3
|
A:SF4608
|
2.3
|
23.5
|
1.0
|
SG
|
A:CYS288
|
2.3
|
21.6
|
1.0
|
FE3
|
A:SF4608
|
2.5
|
21.3
|
1.0
|
FE4
|
A:SF4608
|
2.6
|
20.7
|
1.0
|
FE2
|
A:SF4608
|
2.7
|
19.6
|
1.0
|
CB
|
A:CYS288
|
3.3
|
22.7
|
1.0
|
S1
|
A:SF4608
|
3.9
|
17.6
|
1.0
|
N
|
A:CYS288
|
3.9
|
21.1
|
1.0
|
NH2
|
A:ARG76
|
4.1
|
34.3
|
1.0
|
NH1
|
A:ARG182
|
4.1
|
17.5
|
1.0
|
CA
|
A:CYS288
|
4.2
|
23.3
|
1.0
|
SG
|
A:CYS291
|
4.5
|
22.4
|
1.0
|
CZ
|
A:ARG182
|
4.7
|
21.1
|
1.0
|
SG
|
A:CYS295
|
4.7
|
18.1
|
1.0
|
NH2
|
A:ARG182
|
4.8
|
23.1
|
1.0
|
SG
|
A:CYS494
|
4.8
|
17.7
|
1.0
|
CB
|
A:CYS291
|
4.8
|
19.7
|
1.0
|
O
|
A:HOH5024
|
4.9
|
17.5
|
1.0
|
NE
|
A:ARG76
|
4.9
|
30.3
|
1.0
|
O
|
A:HOH5157
|
4.9
|
54.6
|
1.0
|
CZ
|
A:ARG76
|
5.0
|
30.3
|
1.0
|
C
|
A:PRO287
|
5.0
|
20.7
|
1.0
|
|
Iron binding site 3 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 3 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:19.6
occ:1.00
|
FE2
|
A:SF4608
|
0.0
|
19.6
|
1.0
|
S4
|
A:SF4608
|
2.3
|
17.4
|
1.0
|
S3
|
A:SF4608
|
2.3
|
23.5
|
1.0
|
S1
|
A:SF4608
|
2.3
|
17.6
|
1.0
|
SG
|
A:CYS494
|
2.3
|
17.7
|
1.0
|
FE3
|
A:SF4608
|
2.6
|
21.3
|
1.0
|
FE4
|
A:SF4608
|
2.6
|
20.7
|
1.0
|
FE1
|
A:SF4608
|
2.7
|
24.1
|
1.0
|
CB
|
A:CYS494
|
3.4
|
18.8
|
1.0
|
S2
|
A:SF4608
|
3.9
|
23.8
|
1.0
|
CD2
|
A:PHE496
|
3.9
|
21.9
|
1.0
|
NH2
|
A:ARG76
|
3.9
|
34.3
|
1.0
|
OG1
|
A:THR73
|
4.3
|
24.8
|
1.0
|
CG
|
A:PHE496
|
4.6
|
22.8
|
1.0
|
CE2
|
A:PHE496
|
4.6
|
22.4
|
1.0
|
CB
|
A:PHE496
|
4.6
|
21.4
|
1.0
|
SG
|
A:CYS295
|
4.7
|
18.1
|
1.0
|
SG
|
A:CYS291
|
4.7
|
22.4
|
1.0
|
N33
|
A:PTE609
|
4.7
|
18.5
|
1.0
|
NE
|
A:ARG76
|
4.7
|
30.3
|
1.0
|
CZ
|
A:ARG76
|
4.7
|
30.3
|
1.0
|
SG
|
A:CYS288
|
4.8
|
21.6
|
1.0
|
CA
|
A:CYS494
|
4.8
|
22.2
|
1.0
|
C34
|
A:PTE609
|
4.8
|
19.1
|
1.0
|
|
Iron binding site 4 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 4 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:21.3
occ:1.00
|
FE3
|
A:SF4608
|
0.0
|
21.3
|
1.0
|
S4
|
A:SF4608
|
2.3
|
17.4
|
1.0
|
S2
|
A:SF4608
|
2.3
|
23.8
|
1.0
|
S1
|
A:SF4608
|
2.3
|
17.6
|
1.0
|
SG
|
A:CYS291
|
2.3
|
22.4
|
1.0
|
FE1
|
A:SF4608
|
2.5
|
24.1
|
1.0
|
FE2
|
A:SF4608
|
2.6
|
19.6
|
1.0
|
FE4
|
A:SF4608
|
2.6
|
20.7
|
1.0
|
CB
|
A:CYS291
|
3.3
|
19.7
|
1.0
|
S3
|
A:SF4608
|
3.8
|
23.5
|
1.0
|
OG1
|
A:THR73
|
4.0
|
24.8
|
1.0
|
N
|
A:GLY294
|
4.1
|
20.4
|
1.0
|
CB
|
A:ILE293
|
4.3
|
20.6
|
1.0
|
N
|
A:CYS288
|
4.5
|
21.1
|
1.0
|
SG
|
A:CYS288
|
4.5
|
21.6
|
1.0
|
N
|
A:CYS295
|
4.6
|
21.0
|
1.0
|
SG
|
A:CYS494
|
4.7
|
17.7
|
1.0
|
CA
|
A:CYS291
|
4.7
|
22.9
|
1.0
|
CB
|
A:CYS288
|
4.7
|
22.7
|
1.0
|
CA
|
A:GLY294
|
4.8
|
19.4
|
1.0
|
SG
|
A:CYS295
|
4.8
|
18.1
|
1.0
|
CG2
|
A:ILE293
|
4.9
|
18.9
|
1.0
|
CA
|
A:ILE293
|
5.0
|
22.3
|
1.0
|
C
|
A:ILE293
|
5.0
|
22.7
|
1.0
|
CD1
|
A:ILE293
|
5.0
|
16.9
|
1.0
|
|
Iron binding site 5 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 5 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:20.7
occ:1.00
|
FE4
|
A:SF4608
|
0.0
|
20.7
|
1.0
|
S1
|
A:SF4608
|
2.3
|
17.6
|
1.0
|
S2
|
A:SF4608
|
2.3
|
23.8
|
1.0
|
SG
|
A:CYS295
|
2.3
|
18.1
|
1.0
|
S3
|
A:SF4608
|
2.3
|
23.5
|
1.0
|
FE3
|
A:SF4608
|
2.6
|
21.3
|
1.0
|
FE2
|
A:SF4608
|
2.6
|
19.6
|
1.0
|
FE1
|
A:SF4608
|
2.6
|
24.1
|
1.0
|
CB
|
A:CYS295
|
3.5
|
18.5
|
1.0
|
N
|
A:CYS295
|
3.8
|
21.0
|
1.0
|
S4
|
A:SF4608
|
3.8
|
17.4
|
1.0
|
CD2
|
A:PHE496
|
4.0
|
21.9
|
1.0
|
CA
|
A:CYS295
|
4.1
|
17.8
|
1.0
|
O
|
A:HOH5024
|
4.1
|
17.5
|
1.0
|
CE2
|
A:PHE496
|
4.3
|
22.4
|
1.0
|
N
|
A:GLY296
|
4.5
|
17.7
|
1.0
|
C
|
A:CYS295
|
4.6
|
18.8
|
1.0
|
SG
|
A:CYS291
|
4.7
|
22.4
|
1.0
|
SG
|
A:CYS494
|
4.7
|
17.7
|
1.0
|
SG
|
A:CYS288
|
4.8
|
21.6
|
1.0
|
C
|
A:GLY294
|
5.0
|
20.5
|
1.0
|
|
Iron binding site 6 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 6 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe607
b:22.6
occ:1.00
|
FE1
|
B:SF4607
|
0.0
|
22.6
|
1.0
|
S4
|
B:SF4607
|
2.3
|
23.2
|
1.0
|
SG
|
B:CYS288
|
2.3
|
20.5
|
1.0
|
S2
|
B:SF4607
|
2.3
|
18.2
|
1.0
|
S3
|
B:SF4607
|
2.3
|
19.3
|
1.0
|
FE3
|
B:SF4607
|
2.6
|
21.4
|
1.0
|
FE2
|
B:SF4607
|
2.7
|
21.8
|
1.0
|
FE4
|
B:SF4607
|
2.7
|
20.0
|
1.0
|
CB
|
B:CYS288
|
3.3
|
25.1
|
1.0
|
S1
|
B:SF4607
|
3.9
|
20.7
|
1.0
|
NH2
|
B:ARG76
|
4.0
|
21.2
|
1.0
|
N
|
B:CYS288
|
4.0
|
26.4
|
1.0
|
NH1
|
B:ARG182
|
4.2
|
15.7
|
1.0
|
CA
|
B:CYS288
|
4.3
|
26.3
|
1.0
|
SG
|
B:CYS291
|
4.6
|
22.4
|
1.0
|
SG
|
B:CYS494
|
4.7
|
20.3
|
1.0
|
SG
|
B:CYS295
|
4.7
|
20.6
|
1.0
|
O
|
B:HOH5034
|
4.8
|
18.5
|
1.0
|
CZ
|
B:ARG182
|
4.8
|
16.3
|
1.0
|
NE
|
B:ARG76
|
4.9
|
21.9
|
1.0
|
CZ
|
B:ARG76
|
4.9
|
19.4
|
1.0
|
CB
|
B:CYS291
|
4.9
|
23.7
|
1.0
|
|
Iron binding site 7 out
of 9 in 1aor
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Iron Binding Sites List in 1aor
Iron binding site 7 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe607
b:21.8
occ:1.00
|
FE2
|
B:SF4607
|
0.0
|
21.8
|
1.0
|
S4
|
B:SF4607
|
2.3
|
23.2
|
1.0
|
SG
|
B:CYS494
|
2.3
|
20.3
|
1.0
|
S3
|
B:SF4607
|
2.3
|
19.3
|
1.0
|
S1
|
B:SF4607
|
2.3
|
20.7
|
1.0
|
FE3
|
B:SF4607
|
2.6
|
21.4
|
1.0
|
FE4
|
B:SF4607
|
2.6
|
20.0
|
1.0
|
FE1
|
B:SF4607
|
2.7
|
22.6
|
1.0
|
CB
|
B:CYS494
|
3.3
|
22.0
|
1.0
|
S2
|
B:SF4607
|
3.9
|
18.2
|
1.0
|
CD2
|
B:PHE496
|
4.0
|
14.9
|
1.0
|
NH2
|
B:ARG76
|
4.4
|
21.2
|
1.0
|
N33
|
B:PTE608
|
4.6
|
22.5
|
1.0
|
CG
|
B:PHE496
|
4.6
|
17.8
|
1.0
|
CB
|
B:PHE496
|
4.7
|
19.8
|
1.0
|
SG
|
B:CYS291
|
4.7
|
22.4
|
1.0
|
NE
|
B:ARG76
|
4.7
|
21.9
|
1.0
|
CE2
|
B:PHE496
|
4.7
|
14.5
|
1.0
|
SG
|
B:CYS295
|
4.7
|
20.6
|
1.0
|
C34
|
B:PTE608
|
4.7
|
22.2
|
1.0
|
CA
|
B:CYS494
|
4.7
|
21.8
|
1.0
|
SG
|
B:CYS288
|
4.8
|
20.5
|
1.0
|
CZ
|
B:ARG76
|
4.8
|
19.4
|
1.0
|
CG2
|
B:THR73
|
4.9
|
17.8
|
1.0
|
O22
|
B:PTE608
|
5.0
|
21.6
|
1.0
|
|
Iron binding site 8 out
of 9 in 1aor
Go back to
Iron Binding Sites List in 1aor
Iron binding site 8 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe607
b:21.4
occ:1.00
|
FE3
|
B:SF4607
|
0.0
|
21.4
|
1.0
|
S2
|
B:SF4607
|
2.3
|
18.2
|
1.0
|
S4
|
B:SF4607
|
2.3
|
23.2
|
1.0
|
S1
|
B:SF4607
|
2.3
|
20.7
|
1.0
|
SG
|
B:CYS291
|
2.3
|
22.4
|
1.0
|
FE1
|
B:SF4607
|
2.6
|
22.6
|
1.0
|
FE2
|
B:SF4607
|
2.6
|
21.8
|
1.0
|
FE4
|
B:SF4607
|
2.6
|
20.0
|
1.0
|
CB
|
B:CYS291
|
3.3
|
23.7
|
1.0
|
S3
|
B:SF4607
|
3.8
|
19.3
|
1.0
|
CB
|
B:ILE293
|
4.3
|
21.6
|
1.0
|
N
|
B:GLY294
|
4.3
|
25.1
|
1.0
|
CG2
|
B:THR73
|
4.5
|
17.8
|
1.0
|
SG
|
B:CYS288
|
4.5
|
20.5
|
1.0
|
N
|
B:CYS288
|
4.5
|
26.4
|
1.0
|
N
|
B:CYS295
|
4.6
|
23.2
|
1.0
|
SG
|
B:CYS494
|
4.6
|
20.3
|
1.0
|
CB
|
B:CYS288
|
4.7
|
25.1
|
1.0
|
CA
|
B:CYS291
|
4.7
|
25.4
|
1.0
|
SG
|
B:CYS295
|
4.8
|
20.6
|
1.0
|
CD1
|
B:ILE293
|
4.9
|
20.3
|
1.0
|
CG2
|
B:ILE293
|
4.9
|
21.6
|
1.0
|
CA
|
B:GLY294
|
4.9
|
23.3
|
1.0
|
|
Iron binding site 9 out
of 9 in 1aor
Go back to
Iron Binding Sites List in 1aor
Iron binding site 9 out
of 9 in the Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe607
b:20.0
occ:1.00
|
FE4
|
B:SF4607
|
0.0
|
20.0
|
1.0
|
S1
|
B:SF4607
|
2.3
|
20.7
|
1.0
|
S3
|
B:SF4607
|
2.3
|
19.3
|
1.0
|
SG
|
B:CYS295
|
2.3
|
20.6
|
1.0
|
S2
|
B:SF4607
|
2.3
|
18.2
|
1.0
|
FE3
|
B:SF4607
|
2.6
|
21.4
|
1.0
|
FE2
|
B:SF4607
|
2.6
|
21.8
|
1.0
|
FE1
|
B:SF4607
|
2.7
|
22.6
|
1.0
|
CB
|
B:CYS295
|
3.4
|
18.9
|
1.0
|
N
|
B:CYS295
|
3.8
|
23.2
|
1.0
|
S4
|
B:SF4607
|
3.9
|
23.2
|
1.0
|
CA
|
B:CYS295
|
4.1
|
22.3
|
1.0
|
O
|
B:HOH5034
|
4.1
|
18.5
|
1.0
|
CD2
|
B:PHE496
|
4.2
|
14.9
|
1.0
|
N
|
B:GLY296
|
4.4
|
17.9
|
1.0
|
CE2
|
B:PHE496
|
4.4
|
14.5
|
1.0
|
C
|
B:CYS295
|
4.5
|
20.5
|
1.0
|
SG
|
B:CYS494
|
4.7
|
20.3
|
1.0
|
SG
|
B:CYS291
|
4.7
|
22.4
|
1.0
|
SG
|
B:CYS288
|
4.8
|
20.5
|
1.0
|
|
Reference:
M.K.Chan,
S.Mukund,
A.Kletzin,
M.W.Adams,
D.C.Rees.
Structure of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase. Science V. 267 1463 1995.
ISSN: ISSN 0036-8075
PubMed: 7878465
Page generated: Sat Aug 3 02:18:42 2024
|