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Iron in PDB 1arp: Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases

Enzymatic activity of Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases

All present enzymatic activity of Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases, PDB code: 1arp was solved by N.Kunishima, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 1.90
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.570, 74.570, 117.470, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / n/a

Other elements in 1arp:

The structure of Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases (pdb code 1arp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases, PDB code: 1arp:

Iron binding site 1 out of 1 in 1arp

Go back to Iron Binding Sites List in 1arp
Iron binding site 1 out of 1 in the Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 Angstroms Resolution: Structural Comparisons with the Lignin and Cytochrome C Peroxidases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe345

b:13.3
occ:1.00
 FE A:HEM345 0.0 13.3 1.0
NB A:HEM345 1.9 13.3 1.0
ND A:HEM345 2.0 11.7 1.0
NC A:HEM345 2.0 12.9 1.0
NA A:HEM345 2.0 13.1 1.0
NE2 A:HIS184 2.1 11.2 1.0
O A:HOH415 3.0 17.9 1.0
C4B A:HEM345 3.0 14.1 1.0
C1B A:HEM345 3.0 13.5 1.0
C1D A:HEM345 3.0 10.4 1.0
C1C A:HEM345 3.0 11.3 1.0
C4C A:HEM345 3.0 11.7 1.0
C4D A:HEM345 3.0 9.8 1.0
CD2 A:HIS184 3.0 8.8 1.0
C4A A:HEM345 3.0 10.7 1.0
C1A A:HEM345 3.0 11.5 1.0
CE1 A:HIS184 3.1 8.3 1.0
CHC A:HEM345 3.4 11.7 1.0
CHB A:HEM345 3.4 12.3 1.0
CHD A:HEM345 3.4 10.5 1.0
CHA A:HEM345 3.4 10.5 1.0
CG A:HIS184 4.2 8.0 1.0
ND1 A:HIS184 4.2 10.8 1.0
C3D A:HEM345 4.2 10.0 1.0
C2D A:HEM345 4.2 9.9 1.0
C2A A:HEM345 4.2 11.4 1.0
C3A A:HEM345 4.2 11.2 1.0
C2B A:HEM345 4.2 14.1 1.0
C3B A:HEM345 4.3 14.7 1.0
C2C A:HEM345 4.3 12.8 1.0
C3C A:HEM345 4.3 11.2 1.0
O A:HOH374 4.8 15.9 1.0
O A:HOH377 4.8 25.0 1.0
CG A:ARG52 5.0 14.9 1.0

Reference:

N.Kunishima, K.Fukuyama, H.Matsubara, H.Hatanaka, Y.Shibano, T.Amachi. Crystal Structure of the Fungal Peroxidase From Arthromyces Ramosus at 1.9 A Resolution. Structural Comparisons with the Lignin and Cytochrome C Peroxidases. J.Mol.Biol. V. 235 331 1994.
ISSN: ISSN 0022-2836
PubMed: 8289254
DOI: 10.1016/S0022-2836(05)80037-3
Page generated: Sat Aug 3 02:18:42 2024

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