Iron in PDB 1avm: The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide

All present enzymatic activity of The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide:
1.15.1.1;

The structure of The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide, PDB code: 1avm was solved by M.Schmidt, F.Parak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.55
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	79.680, 85.420, 108.760, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 19.8

The binding sites of Iron atom in the The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide (pdb code 1avm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide, PDB code: 1avm:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:8.9 occ:1.00 OD2 A:ASP161 1.9 8.2 1.0 NE2 A:HIS75 2.1 10.3 1.0 NE2 A:HIS165 2.1 6.4 1.0 O A:HOH204 2.1 11.4 1.0 NE2 A:HIS27 2.2 7.8 1.0 N1 A:AZI203 2.2 15.5 0.6 CE1 A:HIS165 3.0 8.8 1.0 N2 A:AZI203 3.0 15.4 0.6 CG A:ASP161 3.0 9.5 1.0 CE1 A:HIS75 3.0 8.5 1.0 CE1 A:HIS27 3.1 8.3 1.0 CD2 A:HIS27 3.2 8.5 1.0 CD2 A:HIS75 3.2 8.4 1.0 CD2 A:HIS165 3.2 6.7 1.0 OD1 A:ASP161 3.5 9.1 1.0 N3 A:AZI203 3.9 15.6 0.6 ND1 A:HIS165 4.2 8.7 1.0 ND1 A:HIS75 4.2 8.5 1.0 ND1 A:HIS27 4.2 8.1 1.0 CB A:ASP161 4.3 7.4 1.0 CG A:HIS27 4.3 8.9 1.0 CG A:HIS75 4.3 8.7 1.0 CG A:HIS165 4.3 7.7 1.0 CZ2 A:TRP126 4.4 8.8 1.0 CB A:TRP163 4.6 6.8 1.0 CH2 A:TRP126 4.7 9.7 1.0 CG A:TRP163 4.8 5.1 1.0 CB A:ALA166 4.9 9.0 1.0 NE2 A:HIS146 5.0 9.0 1.0

Iron binding site 2 out of 2 in the The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cambialistic Superoxide Dismutase (Fe-Sod) of P. Shermanii Coordinated By Azide within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:8.0 occ:1.00 OD2 B:ASP161 1.9 8.6 1.0 O B:HOH204 2.0 8.8 1.0 NE2 B:HIS75 2.1 8.0 1.0 NE2 B:HIS165 2.2 9.1 1.0 NE2 B:HIS27 2.2 7.0 1.0 N1 B:AZI203 2.3 13.1 0.6 N2 B:AZI203 2.8 15.4 0.6 CG B:ASP161 3.0 9.7 1.0 CE1 B:HIS75 3.1 7.5 1.0 CE1 B:HIS165 3.1 10.3 1.0 CD2 B:HIS27 3.2 8.0 1.0 CE1 B:HIS27 3.2 8.2 1.0 CD2 B:HIS75 3.2 7.9 1.0 CD2 B:HIS165 3.2 9.5 1.0 OD1 B:ASP161 3.5 8.7 1.0 N3 B:AZI203 3.6 11.8 0.6 ND1 B:HIS75 4.2 7.8 1.0 ND1 B:HIS165 4.2 10.1 1.0 ND1 B:HIS27 4.3 8.5 1.0 CB B:ASP161 4.3 7.1 1.0 CG B:HIS75 4.3 7.2 1.0 CG B:HIS27 4.3 7.8 1.0 CG B:HIS165 4.3 8.3 1.0 CZ2 B:TRP126 4.5 7.6 1.0 CB B:TRP163 4.6 8.2 1.0 CH2 B:TRP126 4.7 5.5 1.0 CG B:TRP163 4.8 7.7 1.0 CB B:ALA166 4.9 9.6 1.0 NE2 B:HIS146 4.9 10.5 1.0

M.Schmidt, C.Scherk, O.Iakovleva, H.F.Nolting, B.Meier, F.Parak. The Structure of the Azide Coordinated Superoxide Dismutase of P. Shermanii Investigated By X-Ray Structure Analysis, Exafs, Mossbauer-and Epr Spectroscopy Inorg.Chim.Acta. V.-276 65 1998.
ISSN: ISSN 0020-1693