Iron in PDB 1bbb: A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
Protein crystallography data
The structure of A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution, PDB code: 1bbb
was solved by
A.Arnone,
M.M.Silva,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.500,
101.500,
61.100,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
(pdb code 1bbb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution, PDB code: 1bbb:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1bbb
Go back to
Iron Binding Sites List in 1bbb
Iron binding site 1 out
of 4 in the A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:14.3
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
14.3
|
1.0
|
C
|
A:CMO143
|
1.8
|
16.8
|
1.0
|
ND
|
A:HEM142
|
2.0
|
12.0
|
1.0
|
NB
|
A:HEM142
|
2.0
|
11.8
|
1.0
|
NC
|
A:HEM142
|
2.0
|
11.5
|
1.0
|
NA
|
A:HEM142
|
2.0
|
12.4
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
11.6
|
1.0
|
O
|
A:CMO143
|
2.9
|
17.6
|
1.0
|
CE1
|
A:HIS87
|
3.0
|
12.5
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
14.7
|
1.0
|
C1D
|
A:HEM142
|
3.0
|
13.9
|
1.0
|
C4B
|
A:HEM142
|
3.0
|
11.1
|
1.0
|
C1C
|
A:HEM142
|
3.0
|
12.1
|
1.0
|
C1B
|
A:HEM142
|
3.0
|
15.2
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
12.5
|
1.0
|
C4C
|
A:HEM142
|
3.1
|
14.5
|
1.0
|
C4A
|
A:HEM142
|
3.1
|
14.7
|
1.0
|
CD2
|
A:HIS87
|
3.1
|
12.9
|
1.0
|
CHB
|
A:HEM142
|
3.4
|
14.2
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
16.7
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
13.7
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
13.4
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
13.4
|
1.0
|
CG
|
A:HIS87
|
4.2
|
14.0
|
1.0
|
C3D
|
A:HEM142
|
4.2
|
13.7
|
1.0
|
C2D
|
A:HEM142
|
4.2
|
14.2
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
17.7
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
14.5
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
13.7
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
13.2
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
15.7
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
15.9
|
1.0
|
NE2
|
A:HIS58
|
4.5
|
21.1
|
1.0
|
CG2
|
A:VAL62
|
4.8
|
15.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 1bbb
Go back to
Iron Binding Sites List in 1bbb
Iron binding site 2 out
of 4 in the A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:14.3
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
14.3
|
1.0
|
C
|
B:CMO148
|
1.8
|
20.3
|
1.0
|
ND
|
B:HEM147
|
2.0
|
14.9
|
1.0
|
NB
|
B:HEM147
|
2.0
|
10.7
|
1.0
|
NA
|
B:HEM147
|
2.0
|
13.5
|
1.0
|
NC
|
B:HEM147
|
2.0
|
10.9
|
1.0
|
NE2
|
B:HIS92
|
2.1
|
10.6
|
1.0
|
O
|
B:CMO148
|
2.9
|
22.2
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
12.7
|
1.0
|
C4C
|
B:HEM147
|
3.0
|
12.5
|
1.0
|
C4A
|
B:HEM147
|
3.0
|
12.5
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
11.1
|
1.0
|
C1D
|
B:HEM147
|
3.0
|
14.7
|
1.0
|
C1C
|
B:HEM147
|
3.0
|
13.1
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
10.7
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
16.8
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
18.2
|
1.0
|
CD2
|
B:HIS92
|
3.1
|
14.7
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
15.8
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
13.7
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
10.4
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
12.9
|
1.0
|
ND1
|
B:HIS92
|
4.2
|
15.2
|
1.0
|
C2A
|
B:HEM147
|
4.2
|
17.8
|
1.0
|
CG
|
B:HIS92
|
4.2
|
19.0
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
12.2
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
14.0
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
12.7
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
18.5
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
12.4
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
12.4
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
14.2
|
1.0
|
NE2
|
B:HIS63
|
4.5
|
24.2
|
1.0
|
CG2
|
B:VAL67
|
4.9
|
13.7
|
1.0
|
|
Iron binding site 3 out
of 4 in 1bbb
Go back to
Iron Binding Sites List in 1bbb
Iron binding site 3 out
of 4 in the A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:14.4
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
14.4
|
1.0
|
C
|
C:CMO143
|
1.8
|
18.3
|
1.0
|
ND
|
C:HEM142
|
2.0
|
12.3
|
1.0
|
NB
|
C:HEM142
|
2.0
|
14.4
|
1.0
|
NA
|
C:HEM142
|
2.0
|
12.3
|
1.0
|
NC
|
C:HEM142
|
2.0
|
11.7
|
1.0
|
NE2
|
C:HIS87
|
2.1
|
14.0
|
1.0
|
O
|
C:CMO143
|
2.9
|
16.9
|
1.0
|
CE1
|
C:HIS87
|
3.0
|
15.0
|
1.0
|
C4D
|
C:HEM142
|
3.0
|
14.2
|
1.0
|
C1A
|
C:HEM142
|
3.0
|
11.6
|
1.0
|
C1C
|
C:HEM142
|
3.0
|
10.7
|
1.0
|
C1D
|
C:HEM142
|
3.0
|
13.9
|
1.0
|
C4B
|
C:HEM142
|
3.0
|
12.0
|
1.0
|
C4C
|
C:HEM142
|
3.1
|
11.8
|
1.0
|
C4A
|
C:HEM142
|
3.1
|
12.8
|
1.0
|
C1B
|
C:HEM142
|
3.1
|
13.3
|
1.0
|
CD2
|
C:HIS87
|
3.2
|
15.5
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
13.3
|
1.0
|
CHC
|
C:HEM142
|
3.4
|
13.2
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
10.9
|
1.0
|
CHB
|
C:HEM142
|
3.5
|
10.7
|
1.0
|
ND1
|
C:HIS87
|
4.2
|
16.9
|
1.0
|
C3D
|
C:HEM142
|
4.2
|
15.6
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
14.7
|
1.0
|
C2A
|
C:HEM142
|
4.3
|
14.5
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
12.9
|
1.0
|
CG
|
C:HIS87
|
4.3
|
15.1
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
11.2
|
1.0
|
C3A
|
C:HEM142
|
4.3
|
12.8
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
12.2
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
12.1
|
1.0
|
NE2
|
C:HIS58
|
4.5
|
19.4
|
1.0
|
CG2
|
C:VAL62
|
5.0
|
14.3
|
1.0
|
|
Iron binding site 4 out
of 4 in 1bbb
Go back to
Iron Binding Sites List in 1bbb
Iron binding site 4 out
of 4 in the A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of A Third Quaternary Structure of Human Hemoglobin A at 1.7-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:15.5
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
15.5
|
1.0
|
C
|
D:CMO148
|
1.8
|
15.5
|
1.0
|
ND
|
D:HEM147
|
2.0
|
18.2
|
1.0
|
NB
|
D:HEM147
|
2.0
|
13.7
|
1.0
|
NA
|
D:HEM147
|
2.0
|
15.1
|
1.0
|
NC
|
D:HEM147
|
2.0
|
11.3
|
1.0
|
NE2
|
D:HIS92
|
2.1
|
14.3
|
1.0
|
O
|
D:CMO148
|
2.9
|
19.1
|
1.0
|
C1D
|
D:HEM147
|
3.0
|
22.6
|
1.0
|
C4B
|
D:HEM147
|
3.0
|
15.2
|
1.0
|
C4C
|
D:HEM147
|
3.0
|
14.6
|
1.0
|
CE1
|
D:HIS92
|
3.0
|
17.6
|
1.0
|
C1A
|
D:HEM147
|
3.0
|
16.6
|
1.0
|
C4A
|
D:HEM147
|
3.0
|
16.0
|
1.0
|
C1C
|
D:HEM147
|
3.0
|
10.8
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
22.6
|
1.0
|
C1B
|
D:HEM147
|
3.1
|
14.0
|
1.0
|
CD2
|
D:HIS92
|
3.2
|
14.6
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
19.6
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
14.9
|
1.0
|
CHD
|
D:HEM147
|
3.4
|
17.3
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
13.3
|
1.0
|
ND1
|
D:HIS92
|
4.2
|
16.9
|
1.0
|
C2D
|
D:HEM147
|
4.2
|
25.6
|
1.0
|
C2A
|
D:HEM147
|
4.3
|
18.4
|
1.0
|
C3D
|
D:HEM147
|
4.3
|
25.6
|
1.0
|
C3A
|
D:HEM147
|
4.3
|
18.3
|
1.0
|
CG
|
D:HIS92
|
4.3
|
13.4
|
1.0
|
C2B
|
D:HEM147
|
4.3
|
16.4
|
1.0
|
C3B
|
D:HEM147
|
4.3
|
17.2
|
1.0
|
C3C
|
D:HEM147
|
4.3
|
13.4
|
1.0
|
C2C
|
D:HEM147
|
4.3
|
11.3
|
1.0
|
NE2
|
D:HIS63
|
4.5
|
21.6
|
1.0
|
CG2
|
D:VAL67
|
5.0
|
12.5
|
1.0
|
|
Reference:
M.M.Silva,
P.H.Rogers,
A.Arnone.
A Third Quaternary Structure of Human Hemoglobin A at 1.7-A Resolution. J.Biol.Chem. V. 267 17248 1992.
ISSN: ISSN 0021-9258
PubMed: 1512262
Page generated: Sat Aug 3 02:41:16 2024
|