Iron in the structure of The Structure of A Unique, Two-Fold Symmetric, Haem-Binding Site (pdb 1bcf)

The binding sites of Iron atom in the structure of The Structure of A Unique, Two-Fold Symmetric, Haem-Binding Site (pdb code 1bcf). This binding sites where shown with 5.0 Angstroms radius around Iron atom. The 1bcf structure was solved by F.FROLOW, A.J.KALB(GILBOA), J.YARIV, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 8.0-2.9 Space group P42212 a (A) 211.100 b (A) 211.100 c (A) 145.200 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 20.8 Rfree (%) n/a Iron Binding Sites: Iron binding site 1 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met52, B: Met52, A: Hem200, conact list: Atom Atom Distance (A) Fe CB A:Met52 4.39 Fe CE A:Met52 3.56 Fe CG A:Met52 3.49 Fe SD A:Met52 2.69 Fe CB B:Met52 4.36 Fe CE B:Met52 3.51 Fe CG B:Met52 3.45 Fe SD B:Met52 2.64 Fe C2D A:Hem200 4.32 Fe NC A:Hem200 1.99 Fe CHB A:Hem200 3.47 Fe CHC A:Hem200 3.50 Fe C3D A:Hem200 4.32 Fe NA A:Hem200 2.01 Fe CHA A:Hem200 3.50 Fe C2A A:Hem200 4.25 Fe C1D A:Hem200 3.09 Fe C4A A:Hem200 3.07 Fe C4B A:Hem200 3.10 Fe C3A A:Hem200 4.29 Fe C4C A:Hem200 3.04 Fe C2B A:Hem200 4.35 Fe C1C A:Hem200 3.12 Fe C2C A:Hem200 4.36 Fe ND A:Hem200 2.01 Fe CHD A:Hem200 3.46 Fe C1B A:Hem200 3.08 Fe NB A:Hem200 2.01 Fe FE A:Hem200 0.00 Fe C3C A:Hem200 4.29 Fe C3B A:Hem200 4.33 Fe C4D A:Hem200 3.10 Fe C1A A:Hem200 3.08 interactive model: Iron binding site 2 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Met52, D: Met52, C: Hem201, conact list: Atom Atom Distance (A) Fe CB C:Met52 4.39 Fe CE C:Met52 3.56 Fe CG C:Met52 3.49 Fe SD C:Met52 2.69 Fe CB D:Met52 4.36 Fe CE D:Met52 3.51 Fe CG D:Met52 3.45 Fe SD D:Met52 2.64 Fe C2D C:Hem201 4.32 Fe NC C:Hem201 1.99 Fe CHB C:Hem201 3.47 Fe CHC C:Hem201 3.50 Fe C3D C:Hem201 4.32 Fe NA C:Hem201 2.01 Fe CHA C:Hem201 3.50 Fe C2A C:Hem201 4.25 Fe C1D C:Hem201 3.09 Fe C4A C:Hem201 3.07 Fe C4B C:Hem201 3.10 Fe C3A C:Hem201 4.29 Fe C4C C:Hem201 3.04 Fe C2B C:Hem201 4.35 Fe C1C C:Hem201 3.12 Fe C2C C:Hem201 4.36 Fe ND C:Hem201 2.02 Fe CHD C:Hem201 3.46 Fe C1B C:Hem201 3.08 Fe NB C:Hem201 2.01 Fe FE C:Hem201 0.00 Fe C3C C:Hem201 4.29 Fe C3B C:Hem201 4.33 Fe C4D C:Hem201 3.10 Fe C1A C:Hem201 3.08 interactive model: Iron binding site 3 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Met52, F: Met52, E: Hem202, conact list: Atom Atom Distance (A) Fe CB E:Met52 4.39 Fe CE E:Met52 3.56 Fe CG E:Met52 3.49 Fe SD E:Met52 2.69 Fe CB F:Met52 4.36 Fe CE F:Met52 3.51 Fe CG F:Met52 3.45 Fe SD F:Met52 2.64 Fe C2D E:Hem202 4.32 Fe NC E:Hem202 1.99 Fe CHB E:Hem202 3.47 Fe CHC E:Hem202 3.50 Fe C3D E:Hem202 4.32 Fe NA E:Hem202 2.01 Fe CHA E:Hem202 3.50 Fe C2A E:Hem202 4.25 Fe C1D E:Hem202 3.09 Fe C4A E:Hem202 3.07 Fe C4B E:Hem202 3.10 Fe C3A E:Hem202 4.29 Fe C4C E:Hem202 3.04 Fe C2B E:Hem202 4.35 Fe C1C E:Hem202 3.12 Fe C2C E:Hem202 4.36 Fe ND E:Hem202 2.02 Fe CHD E:Hem202 3.46 Fe C1B E:Hem202 3.08 Fe NB E:Hem202 2.01 Fe FE E:Hem202 0.00 Fe C3C E:Hem202 4.29 Fe C3B E:Hem202 4.33 Fe C4D E:Hem202 3.10 Fe C1A E:Hem202 3.08 interactive model: Iron binding site 4 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Met52, H: Met52, G: Hem203, conact list: Atom Atom Distance (A) Fe CB G:Met52 4.39 Fe CE G:Met52 3.56 Fe CG G:Met52 3.49 Fe SD G:Met52 2.69 Fe CB H:Met52 4.36 Fe CE H:Met52 3.51 Fe CG H:Met52 3.45 Fe SD H:Met52 2.64 Fe C2D G:Hem203 4.32 Fe NC G:Hem203 1.99 Fe CHB G:Hem203 3.47 Fe CHC G:Hem203 3.50 Fe C3D G:Hem203 4.32 Fe NA G:Hem203 2.01 Fe CHA G:Hem203 3.50 Fe C2A G:Hem203 4.25 Fe C1D G:Hem203 3.09 Fe C4A G:Hem203 3.07 Fe C4B G:Hem203 3.10 Fe C3A G:Hem203 4.29 Fe C4C G:Hem203 3.04 Fe C2B G:Hem203 4.35 Fe C1C G:Hem203 3.12 Fe C2C G:Hem203 4.36 Fe ND G:Hem203 2.02 Fe CHD G:Hem203 3.46 Fe C1B G:Hem203 3.08 Fe NB G:Hem203 2.01 Fe FE G:Hem203 0.00 Fe C3C G:Hem203 4.29 Fe C3B G:Hem203 4.33 Fe C4D G:Hem203 3.10 Fe C1A G:Hem203 3.08 interactive model: Iron binding site 5 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Met52, J: Met52, I: Hem204, conact list: Atom Atom Distance (A) Fe CB I:Met52 4.39 Fe CE I:Met52 3.56 Fe CG I:Met52 3.49 Fe SD I:Met52 2.69 Fe CB J:Met52 4.36 Fe CE J:Met52 3.51 Fe CG J:Met52 3.45 Fe SD J:Met52 2.64 Fe C2D I:Hem204 4.32 Fe NC I:Hem204 1.99 Fe CHB I:Hem204 3.47 Fe CHC I:Hem204 3.50 Fe C3D I:Hem204 4.32 Fe NA I:Hem204 2.01 Fe CHA I:Hem204 3.50 Fe C2A I:Hem204 4.25 Fe C1D I:Hem204 3.09 Fe C4A I:Hem204 3.07 Fe C4B I:Hem204 3.10 Fe C3A I:Hem204 4.29 Fe C4C I:Hem204 3.04 Fe C2B I:Hem204 4.35 Fe C1C I:Hem204 3.12 Fe C2C I:Hem204 4.36 Fe ND I:Hem204 2.01 Fe CHD I:Hem204 3.46 Fe C1B I:Hem204 3.08 Fe NB I:Hem204 2.01 Fe FE I:Hem204 0.00 Fe C3C I:Hem204 4.29 Fe C3B I:Hem204 4.33 Fe C4D I:Hem204 3.10 Fe C1A I:Hem204 3.08 interactive model: Iron binding site 6 out of 6 in 1bcf Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Iron in the PDB 1bcf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: K: Met52, L: Met52, K: Hem205, conact list: Atom Atom Distance (A) Fe CB K:Met52 4.39 Fe CE K:Met52 3.56 Fe CG K:Met52 3.49 Fe SD K:Met52 2.69 Fe CB L:Met52 4.36 Fe CE L:Met52 3.51 Fe CG L:Met52 3.45 Fe SD L:Met52 2.64 Fe C2D K:Hem205 4.32 Fe NC K:Hem205 1.99 Fe CHB K:Hem205 3.47 Fe CHC K:Hem205 3.50 Fe C3D K:Hem205 4.32 Fe NA K:Hem205 2.01 Fe CHA K:Hem205 3.50 Fe C2A K:Hem205 4.25 Fe C1D K:Hem205 3.09 Fe C4A K:Hem205 3.07 Fe C4B K:Hem205 3.10 Fe C3A K:Hem205 4.29 Fe C4C K:Hem205 3.04 Fe C2B K:Hem205 4.35 Fe C1C K:Hem205 3.12 Fe C2C K:Hem205 4.36 Fe ND K:Hem205 2.01 Fe CHD K:Hem205 3.46 Fe C1B K:Hem205 3.08 Fe NB K:Hem205 2.01 Fe FE K:Hem205 0.00 Fe C3C K:Hem205 4.29 Fe C3B K:Hem205 4.33 Fe C4D K:Hem205 3.10 Fe C1A K:Hem205 3.08 interactive model: