Iron in PDB 1bfr: Iron Storage and Electron Transport
Protein crystallography data
The structure of Iron Storage and Electron Transport, PDB code: 1bfr
was solved by
A.Dautant,
J.Yariv,
J.B.Meyer,
G.Precigoux,
R.M.Sweet,
F.Frolow,
A.J.Kalb(Gilboa),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
10.00 /
2.94
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
118.700,
211.600,
123.300,
90.00,
119.10,
90.00
|
|
R / Rfree (%)
|
21.6 /
n/a
|
Other elements in 1bfr:
The structure of Iron Storage and Electron Transport also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Iron Storage and Electron Transport
(pdb code 1bfr). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Iron Storage and Electron Transport, PDB code: 1bfr:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 1 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe200
b:3.2
occ:1.00
|
FE
|
B:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
B:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
B:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
B:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
B:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
A:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
B:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
B:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
B:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
B:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
B:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
B:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
B:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
B:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
B:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
B:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
B:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
B:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
B:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
A:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
B:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
A:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
B:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
B:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
B:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
B:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
B:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
B:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
A:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
B:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
B:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
B:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
B:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 2 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 2 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe200
b:3.2
occ:1.00
|
FE
|
D:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
D:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
D:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
D:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
D:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
C:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
D:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
D:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
D:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
D:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
D:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
D:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
D:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
D:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
D:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
D:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
D:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
D:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
D:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
C:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
D:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
C:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
D:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
D:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
D:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
D:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
D:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
D:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
C:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
D:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
D:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
D:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
D:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 3 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 3 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe200
b:3.2
occ:1.00
|
FE
|
F:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
F:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
F:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
F:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
F:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
E:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
F:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
F:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
F:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
F:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
F:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
F:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
F:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
F:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
F:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
F:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
F:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
F:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
F:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
E:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
F:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
E:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
F:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
F:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
F:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
F:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
F:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
F:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
E:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
F:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
F:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
F:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
F:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 4 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 4 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe200
b:3.2
occ:1.00
|
FE
|
H:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
H:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
H:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
H:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
H:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
G:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
H:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
H:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
H:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
H:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
H:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
H:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
H:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
H:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
H:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
H:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
H:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
H:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
H:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
G:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
H:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
G:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
H:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
H:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
H:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
H:HEM200
|
4.2
|
4.8
|
1.0
|
|
CB
|
H:MET52
|
4.3
|
2.0
|
1.0
|
|
C3A
|
H:HEM200
|
4.3
|
3.5
|
1.0
|
|
CB
|
G:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
H:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
H:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
H:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
H:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 5 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 5 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe200
b:3.2
occ:1.00
|
FE
|
J:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
J:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
J:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
J:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
J:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
I:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
J:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
J:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
J:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
J:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
J:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
J:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
J:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
J:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
J:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
J:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
J:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
J:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
J:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
I:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
J:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
I:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
J:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
J:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
J:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
J:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
J:HEM200
|
4.3
|
3.5
|
1.0
|
|
CB
|
J:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
I:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
J:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
J:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
J:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
J:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 6 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 6 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Fe200
b:3.2
occ:1.00
|
FE
|
L:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
L:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
L:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
L:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
L:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
K:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
L:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
L:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
L:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
L:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
L:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
L:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
L:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
L:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
L:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
L:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
L:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
L:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
L:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
K:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
L:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
K:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
L:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
L:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
L:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
L:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
L:HEM200
|
4.3
|
3.5
|
1.0
|
|
CB
|
L:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
K:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
L:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
L:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
L:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
L:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 7 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 7 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe200
b:3.2
occ:1.00
|
FE
|
N:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
N:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
N:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
N:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
N:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
M:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
N:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
N:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
N:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
N:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
N:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
N:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
N:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
N:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
N:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
N:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
N:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
N:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
N:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
M:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
N:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
M:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
N:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
N:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
N:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
N:HEM200
|
4.2
|
4.8
|
1.0
|
|
CB
|
N:MET52
|
4.3
|
2.0
|
1.0
|
|
C3A
|
N:HEM200
|
4.3
|
3.5
|
1.0
|
|
CB
|
M:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
N:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
N:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
N:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
N:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 8 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 8 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe200
b:3.2
occ:1.00
|
FE
|
P:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
P:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
P:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
P:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
P:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
O:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
P:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
P:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
P:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
P:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
P:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
P:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
P:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
P:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
P:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
P:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
P:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
P:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
P:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
O:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
P:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
O:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
P:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
P:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
P:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
P:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
P:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
P:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
O:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
P:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
P:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
P:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
P:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 9 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 9 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe200
b:3.2
occ:1.00
|
FE
|
R:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
R:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
R:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
R:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
R:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
Q:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
R:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
R:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
R:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
R:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
R:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
R:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
R:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
R:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
R:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
R:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
R:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
R:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
R:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
Q:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
R:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
Q:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
R:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
R:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
R:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
R:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
R:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
R:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
Q:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
R:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
R:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
R:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
R:HEM200
|
4.3
|
2.5
|
1.0
|
|
Iron binding site 10 out
of 12 in 1bfr
Go back to
Iron Binding Sites List in 1bfr
Iron binding site 10 out
of 12 in the Iron Storage and Electron Transport
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Iron Storage and Electron Transport within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Fe200
b:3.2
occ:1.00
|
FE
|
T:HEM200
|
0.0
|
3.2
|
1.0
|
|
ND
|
T:HEM200
|
1.9
|
3.3
|
1.0
|
|
NA
|
T:HEM200
|
2.0
|
4.0
|
1.0
|
|
NB
|
T:HEM200
|
2.0
|
2.9
|
1.0
|
|
NC
|
T:HEM200
|
2.0
|
3.0
|
1.0
|
|
SD
|
S:MET52
|
2.2
|
3.1
|
1.0
|
|
SD
|
T:MET52
|
2.2
|
3.6
|
1.0
|
|
C4D
|
T:HEM200
|
3.0
|
4.2
|
1.0
|
|
C1D
|
T:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1A
|
T:HEM200
|
3.0
|
4.6
|
1.0
|
|
C4B
|
T:HEM200
|
3.0
|
3.0
|
1.0
|
|
C4A
|
T:HEM200
|
3.0
|
4.0
|
1.0
|
|
C4C
|
T:HEM200
|
3.0
|
3.8
|
1.0
|
|
C1C
|
T:HEM200
|
3.0
|
3.1
|
1.0
|
|
C1B
|
T:HEM200
|
3.0
|
3.5
|
1.0
|
|
CHA
|
T:HEM200
|
3.4
|
4.5
|
1.0
|
|
CHD
|
T:HEM200
|
3.4
|
4.3
|
1.0
|
|
CHC
|
T:HEM200
|
3.4
|
2.8
|
1.0
|
|
CHB
|
T:HEM200
|
3.4
|
4.1
|
1.0
|
|
CE
|
S:MET52
|
3.4
|
2.0
|
1.0
|
|
CE
|
T:MET52
|
3.5
|
2.2
|
1.0
|
|
CG
|
S:MET52
|
3.6
|
2.0
|
1.0
|
|
CG
|
T:MET52
|
3.6
|
2.3
|
1.0
|
|
C3D
|
T:HEM200
|
4.2
|
4.4
|
1.0
|
|
C2D
|
T:HEM200
|
4.2
|
3.4
|
1.0
|
|
C2A
|
T:HEM200
|
4.2
|
4.8
|
1.0
|
|
C3A
|
T:HEM200
|
4.2
|
3.5
|
1.0
|
|
CB
|
T:MET52
|
4.3
|
2.0
|
1.0
|
|
CB
|
S:MET52
|
4.3
|
2.0
|
1.0
|
|
C3B
|
T:HEM200
|
4.3
|
2.6
|
1.0
|
|
C3C
|
T:HEM200
|
4.3
|
3.3
|
1.0
|
|
C2C
|
T:HEM200
|
4.3
|
2.5
|
1.0
|
|
C2B
|
T:HEM200
|
4.3
|
2.5
|
1.0
|
|
Reference:
A.Dautant,
J.B.Meyer,
J.Yariv,
G.Precigoux,
R.M.Sweet,
A.J.Kalb,
F.Frolow.
Structure of A Monoclinic Crystal From of Cyctochrome B1 (Bacterioferritin) From E. Coli. Acta Crystallogr.,Sect.D V. 54 16 1998.
ISSN: ISSN 0907-4449
PubMed: 9867433
DOI: 10.1107/S0907444997006811
Page generated: Sat Aug 3 02:46:27 2024
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