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Iron in PDB 1c7c: Deoxy RHB1.1 (Recombinant Hemoglobin)

Protein crystallography data

The structure of Deoxy RHB1.1 (Recombinant Hemoglobin), PDB code: 1c7c was solved by E.A.Brucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.204, 83.357, 54.003, 90.00, 99.07, 90.00
R / Rfree (%) 17.5 / 22.7

Iron Binding Sites:

The binding sites of Iron atom in the Deoxy RHB1.1 (Recombinant Hemoglobin) (pdb code 1c7c). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Deoxy RHB1.1 (Recombinant Hemoglobin), PDB code: 1c7c:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1c7c

Go back to Iron Binding Sites List in 1c7c
Iron binding site 1 out of 4 in the Deoxy RHB1.1 (Recombinant Hemoglobin)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Deoxy RHB1.1 (Recombinant Hemoglobin) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe284

b:18.6
occ:1.00
FE A:HEM284 0.0 18.6 1.0
ND A:HEM284 2.1 18.9 1.0
NC A:HEM284 2.1 16.8 1.0
NB A:HEM284 2.1 19.3 1.0
NA A:HEM284 2.1 20.8 1.0
NE2 A:HIS87 2.2 18.3 1.0
CE1 A:HIS87 3.0 17.5 1.0
C4D A:HEM284 3.1 21.8 1.0
C1B A:HEM284 3.1 22.6 1.0
C4A A:HEM284 3.1 19.2 1.0
C1A A:HEM284 3.1 18.3 1.0
C4C A:HEM284 3.1 17.4 1.0
C1C A:HEM284 3.1 16.9 1.0
C4B A:HEM284 3.1 22.1 1.0
C1D A:HEM284 3.1 21.3 1.0
CD2 A:HIS87 3.3 17.0 1.0
CHB A:HEM284 3.4 22.8 1.0
CHA A:HEM284 3.4 20.0 1.0
CHC A:HEM284 3.4 18.1 1.0
CHD A:HEM284 3.4 19.5 1.0
O A:HOH1167 3.7 25.2 1.0
ND1 A:HIS87 4.2 17.6 1.0
C3D A:HEM284 4.3 19.3 1.0
C2B A:HEM284 4.3 20.2 1.0
C2A A:HEM284 4.3 21.7 1.0
C3A A:HEM284 4.3 24.0 1.0
C2D A:HEM284 4.3 22.9 1.0
C2C A:HEM284 4.3 13.3 1.0
C3B A:HEM284 4.3 16.7 1.0
C3C A:HEM284 4.4 14.9 1.0
CG A:HIS87 4.4 17.3 1.0
NE2 A:HIS58 4.5 26.9 1.0
CE1 A:HIS58 4.5 26.7 1.0
CD1 A:LEU91 4.6 22.1 1.0

Iron binding site 2 out of 4 in 1c7c

Go back to Iron Binding Sites List in 1c7c
Iron binding site 2 out of 4 in the Deoxy RHB1.1 (Recombinant Hemoglobin)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Deoxy RHB1.1 (Recombinant Hemoglobin) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe285

b:16.9
occ:1.00
FE A:HEM285 0.0 16.9 1.0
ND A:HEM285 2.1 16.7 1.0
NA A:HEM285 2.1 19.0 1.0
NC A:HEM285 2.1 13.4 1.0
NB A:HEM285 2.1 17.7 1.0
NE2 A:HIS229 2.1 11.4 1.0
CE1 A:HIS229 2.9 13.2 1.0
C4D A:HEM285 3.1 18.8 1.0
C1C A:HEM285 3.1 13.0 1.0
C4B A:HEM285 3.1 13.9 1.0
C1D A:HEM285 3.1 16.9 1.0
C1B A:HEM285 3.1 19.9 1.0
C4A A:HEM285 3.1 21.8 1.0
C1A A:HEM285 3.1 19.7 1.0
C4C A:HEM285 3.1 13.9 1.0
CD2 A:HIS229 3.3 13.2 1.0
CHB A:HEM285 3.4 17.4 1.0
CHA A:HEM285 3.4 20.8 1.0
CHC A:HEM285 3.4 13.6 1.0
CHD A:HEM285 3.4 16.4 1.0
O A:HOH1180 3.7 32.9 1.0
ND1 A:HIS229 4.1 17.1 1.0
C3D A:HEM285 4.3 22.3 1.0
C2D A:HEM285 4.3 17.9 1.0
C2C A:HEM285 4.3 13.7 1.0
C2B A:HEM285 4.3 22.2 1.0
C2A A:HEM285 4.3 21.3 1.0
CG A:HIS229 4.3 12.4 1.0
C3A A:HEM285 4.3 21.1 1.0
C3B A:HEM285 4.3 18.6 1.0
C3C A:HEM285 4.3 12.6 1.0
CD1 A:LEU233 4.5 19.2 1.0
NE2 A:HIS200 4.5 23.9 1.0
CE1 A:HIS200 4.6 25.7 1.0

Iron binding site 3 out of 4 in 1c7c

Go back to Iron Binding Sites List in 1c7c
Iron binding site 3 out of 4 in the Deoxy RHB1.1 (Recombinant Hemoglobin)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Deoxy RHB1.1 (Recombinant Hemoglobin) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:17.8
occ:1.00
FE B:HEM147 0.0 17.8 1.0
ND B:HEM147 2.1 18.4 1.0
NC B:HEM147 2.1 16.6 1.0
NA B:HEM147 2.1 19.2 1.0
NB B:HEM147 2.1 15.8 1.0
NE2 B:HIS92 2.2 18.9 1.0
CE1 B:HIS92 3.0 21.5 1.0
C4D B:HEM147 3.1 17.7 1.0
C1D B:HEM147 3.1 15.9 1.0
C1B B:HEM147 3.1 19.0 1.0
C4B B:HEM147 3.1 19.6 1.0
C1A B:HEM147 3.1 20.1 1.0
C1C B:HEM147 3.1 15.4 1.0
C4C B:HEM147 3.1 14.1 1.0
C4A B:HEM147 3.1 16.9 1.0
CD2 B:HIS92 3.3 18.4 1.0
CHA B:HEM147 3.4 18.9 1.0
CHD B:HEM147 3.4 13.4 1.0
CHB B:HEM147 3.4 15.1 1.0
CHC B:HEM147 3.4 15.5 1.0
CG2 B:VAL67 4.2 22.1 1.0
ND1 B:HIS92 4.2 19.3 1.0
NE2 B:HIS63 4.2 25.1 1.0
C3D B:HEM147 4.3 18.4 1.0
C2B B:HEM147 4.3 15.6 1.0
C2D B:HEM147 4.3 17.3 1.0
C2A B:HEM147 4.3 17.9 1.0
C3B B:HEM147 4.3 18.4 1.0
C2C B:HEM147 4.3 16.1 1.0
C3A B:HEM147 4.3 12.4 1.0
C3C B:HEM147 4.3 13.6 1.0
CG B:HIS92 4.4 19.9 1.0
CE1 B:HIS63 4.6 28.2 1.0

Iron binding site 4 out of 4 in 1c7c

Go back to Iron Binding Sites List in 1c7c
Iron binding site 4 out of 4 in the Deoxy RHB1.1 (Recombinant Hemoglobin)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Deoxy RHB1.1 (Recombinant Hemoglobin) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:17.0
occ:1.00
FE D:HEM147 0.0 17.0 1.0
ND D:HEM147 2.1 16.3 1.0
NC D:HEM147 2.1 13.1 1.0
NA D:HEM147 2.1 21.6 1.0
NB D:HEM147 2.1 16.4 1.0
NE2 D:HIS92 2.2 18.2 1.0
CE1 D:HIS92 3.0 18.7 1.0
C4D D:HEM147 3.1 16.2 1.0
C1A D:HEM147 3.1 19.8 1.0
C1B D:HEM147 3.1 19.8 1.0
C1D D:HEM147 3.1 17.6 1.0
C4C D:HEM147 3.1 12.9 1.0
C4B D:HEM147 3.1 12.0 1.0
C4A D:HEM147 3.1 23.2 1.0
C1C D:HEM147 3.1 14.2 1.0
CD2 D:HIS92 3.3 16.3 1.0
CHA D:HEM147 3.4 16.3 1.0
CHB D:HEM147 3.4 15.9 1.0
CHC D:HEM147 3.4 13.1 1.0
CHD D:HEM147 3.4 15.1 1.0
ND1 D:HIS92 4.2 18.1 1.0
CG2 D:VAL67 4.3 26.6 1.0
C2D D:HEM147 4.3 24.2 1.0
C2B D:HEM147 4.3 14.3 1.0
C3D D:HEM147 4.3 18.8 1.0
NE2 D:HIS63 4.3 27.0 1.0
C2A D:HEM147 4.3 14.9 1.0
C3B D:HEM147 4.3 15.1 1.0
C2C D:HEM147 4.3 16.4 1.0
C3A D:HEM147 4.3 21.3 1.0
CG D:HIS92 4.3 15.3 1.0
C3C D:HEM147 4.3 14.0 1.0
CE1 D:HIS63 4.8 30.7 1.0
CD1 D:LEU96 4.9 18.9 1.0

Reference:

E.A.Brucker, E.A.Brucker. N/A N/A.
ISSN: ISSN 0907-4449
PubMed: 10930828
DOI: 10.1107/S0907444900006557
Page generated: Sun Dec 13 14:08:33 2020

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