Iron in PDB 1cyc: The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function

The structure of The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function, PDB code: 1cyc was solved by N.Tanaka, T.Yamane, T.Tsukihara, T.Ashida, M.Kakudo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.680, 84.580, 37.830, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Iron atom in the The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function (pdb code 1cyc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function, PDB code: 1cyc:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe104 b:0.0 occ:1.00 FE A:HEM104 0.0 0.0 1.0 ND A:HEM104 1.6 0.0 1.0 NB A:HEM104 1.7 0.0 1.0 NA A:HEM104 1.9 0.0 1.0 NC A:HEM104 1.9 0.0 1.0 SD A:MET80 2.5 0.0 1.0 NE2 A:HIS18 2.6 0.0 1.0 C1B A:HEM104 2.7 0.0 1.0 C1D A:HEM104 2.8 0.0 1.0 C4D A:HEM104 2.8 0.0 1.0 C4C A:HEM104 2.8 0.0 1.0 C4B A:HEM104 2.9 0.0 1.0 C1A A:HEM104 2.9 0.0 1.0 C1C A:HEM104 3.0 0.0 1.0 C4A A:HEM104 3.1 0.0 1.0 CHB A:HEM104 3.2 0.0 1.0 CHA A:HEM104 3.3 0.0 1.0 CHC A:HEM104 3.3 0.0 1.0 CHD A:HEM104 3.4 0.0 1.0 CE1 A:HIS18 3.5 0.0 1.0 CE A:MET80 3.7 0.0 1.0 CD2 A:HIS18 3.7 0.0 1.0 C2D A:HEM104 3.8 0.0 1.0 C2B A:HEM104 3.9 0.0 1.0 C3D A:HEM104 3.9 0.0 1.0 C3C A:HEM104 4.0 0.0 1.0 C3B A:HEM104 4.0 0.0 1.0 C3A A:HEM104 4.0 0.0 1.0 CG A:MET80 4.0 0.0 1.0 C2A A:HEM104 4.0 0.0 1.0 C2C A:HEM104 4.2 0.0 1.0 CB A:MET80 4.3 0.0 1.0 ND1 A:HIS18 4.4 0.0 1.0

Iron binding site 2 out of 2 in the The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 Angstroms Resolution. II. Structure and Function within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe104 b:0.0 occ:1.00 FE B:HEM104 0.0 0.0 1.0 ND B:HEM104 1.6 0.0 1.0 NB B:HEM104 1.7 0.0 1.0 NA B:HEM104 1.9 0.0 1.0 NC B:HEM104 1.9 0.0 1.0 SD B:MET80 2.5 0.0 1.0 NE2 B:HIS18 2.6 0.0 1.0 C1B B:HEM104 2.7 0.0 1.0 C1D B:HEM104 2.8 0.0 1.0 C4D B:HEM104 2.8 0.0 1.0 C4C B:HEM104 2.8 0.0 1.0 C4B B:HEM104 2.9 0.0 1.0 C1A B:HEM104 2.9 0.0 1.0 C1C B:HEM104 3.0 0.0 1.0 C4A B:HEM104 3.1 0.0 1.0 CHB B:HEM104 3.2 0.0 1.0 CHA B:HEM104 3.3 0.0 1.0 CHC B:HEM104 3.3 0.0 1.0 CHD B:HEM104 3.4 0.0 1.0 CE1 B:HIS18 3.5 0.0 1.0 CE B:MET80 3.7 0.0 1.0 CD2 B:HIS18 3.7 0.0 1.0 C2D B:HEM104 3.8 0.0 1.0 C2B B:HEM104 3.9 0.0 1.0 C3D B:HEM104 3.9 0.0 1.0 C3C B:HEM104 4.0 0.0 1.0 C3B B:HEM104 4.0 0.0 1.0 C3A B:HEM104 4.0 0.0 1.0 CG B:MET80 4.0 0.0 1.0 C2A B:HEM104 4.0 0.0 1.0 C2C B:HEM104 4.2 0.0 1.0 CB B:MET80 4.3 0.0 1.0 ND1 B:HIS18 4.4 0.0 1.0

N.Tanaka, T.Yamane, T.Tsukihara, T.Ashida, M.Kakudo. The Crystal Structure of Bonito (Katsuo) Ferrocytochrome C at 2.3 A Resolution. II. Structure and Function. J.Biochem.(Tokyo) V. 77 147 1975.
ISSN: ISSN 0021-924X
PubMed: 166072