Iron in PDB 1d4c: Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Enzymatic activity of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
All present enzymatic activity of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1:
1.3.99.1;
Protein crystallography data
The structure of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1, PDB code: 1d4c
was solved by
D.Leys,
A.S.Tsapin,
T.E.Meyer,
M.A.Cusanovich,
J.J.Van Beeumen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.00 /
2.90
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
109.690,
216.360,
112.040,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21 /
30
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
(pdb code 1d4c). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1, PDB code: 1d4c:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 1 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:21.6
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
21.6
|
1.0
|
NB
|
A:HEM601
|
2.0
|
23.9
|
1.0
|
ND
|
A:HEM601
|
2.0
|
20.4
|
1.0
|
NC
|
A:HEM601
|
2.0
|
19.7
|
1.0
|
NA
|
A:HEM601
|
2.0
|
21.5
|
1.0
|
NE2
|
A:HIS88
|
2.1
|
12.1
|
1.0
|
NE2
|
A:HIS63
|
2.1
|
6.0
|
1.0
|
CE1
|
A:HIS63
|
2.9
|
7.1
|
1.0
|
CD2
|
A:HIS88
|
3.0
|
15.5
|
1.0
|
C1C
|
A:HEM601
|
3.0
|
19.4
|
1.0
|
C4D
|
A:HEM601
|
3.0
|
20.1
|
1.0
|
C1D
|
A:HEM601
|
3.0
|
19.3
|
1.0
|
C4B
|
A:HEM601
|
3.0
|
23.9
|
1.0
|
C4A
|
A:HEM601
|
3.0
|
22.1
|
1.0
|
C1B
|
A:HEM601
|
3.0
|
24.4
|
1.0
|
C1A
|
A:HEM601
|
3.0
|
22.0
|
1.0
|
C4C
|
A:HEM601
|
3.0
|
17.6
|
1.0
|
CE1
|
A:HIS88
|
3.0
|
13.3
|
1.0
|
CD2
|
A:HIS63
|
3.2
|
6.8
|
1.0
|
CHC
|
A:HEM601
|
3.3
|
21.6
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
20.1
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
19.2
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
23.0
|
1.0
|
ND1
|
A:HIS63
|
4.1
|
6.4
|
1.0
|
CG
|
A:HIS88
|
4.1
|
16.7
|
1.0
|
ND1
|
A:HIS88
|
4.1
|
14.5
|
1.0
|
C3D
|
A:HEM601
|
4.2
|
20.9
|
1.0
|
C2D
|
A:HEM601
|
4.2
|
18.5
|
1.0
|
C3B
|
A:HEM601
|
4.2
|
23.0
|
1.0
|
C2C
|
A:HEM601
|
4.2
|
17.7
|
1.0
|
C3C
|
A:HEM601
|
4.2
|
16.4
|
1.0
|
C2B
|
A:HEM601
|
4.2
|
23.8
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
22.9
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
21.8
|
1.0
|
CG
|
A:HIS63
|
4.3
|
5.9
|
1.0
|
|
Iron binding site 2 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 2 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:21.7
occ:1.00
|
FE
|
A:HEM602
|
0.0
|
21.7
|
1.0
|
NB
|
A:HEM602
|
2.0
|
19.8
|
1.0
|
NA
|
A:HEM602
|
2.0
|
23.4
|
1.0
|
NE2
|
A:HIS60
|
2.0
|
16.7
|
1.0
|
ND
|
A:HEM602
|
2.0
|
24.2
|
1.0
|
NC
|
A:HEM602
|
2.0
|
20.4
|
1.0
|
NE2
|
A:HIS74
|
2.1
|
16.3
|
1.0
|
CE1
|
A:HIS60
|
2.9
|
17.8
|
1.0
|
CD2
|
A:HIS74
|
3.0
|
18.3
|
1.0
|
C4A
|
A:HEM602
|
3.0
|
24.2
|
1.0
|
C4D
|
A:HEM602
|
3.0
|
25.6
|
1.0
|
C4B
|
A:HEM602
|
3.0
|
18.7
|
1.0
|
C1C
|
A:HEM602
|
3.0
|
20.3
|
1.0
|
C1B
|
A:HEM602
|
3.0
|
18.5
|
1.0
|
C1A
|
A:HEM602
|
3.0
|
23.2
|
1.0
|
CD2
|
A:HIS60
|
3.1
|
18.9
|
1.0
|
C4C
|
A:HEM602
|
3.1
|
20.2
|
1.0
|
C1D
|
A:HEM602
|
3.1
|
24.9
|
1.0
|
CE1
|
A:HIS74
|
3.2
|
18.0
|
1.0
|
CHA
|
A:HEM602
|
3.4
|
24.4
|
1.0
|
CHC
|
A:HEM602
|
3.4
|
20.6
|
1.0
|
CHB
|
A:HEM602
|
3.4
|
21.5
|
1.0
|
CHD
|
A:HEM602
|
3.5
|
23.5
|
1.0
|
ND1
|
A:HIS60
|
4.0
|
18.7
|
1.0
|
CG
|
A:HIS60
|
4.2
|
20.0
|
1.0
|
CG
|
A:HIS74
|
4.2
|
19.3
|
1.0
|
C3B
|
A:HEM602
|
4.2
|
16.6
|
1.0
|
C2A
|
A:HEM602
|
4.3
|
24.0
|
1.0
|
C3A
|
A:HEM602
|
4.3
|
24.5
|
1.0
|
C3D
|
A:HEM602
|
4.3
|
27.3
|
1.0
|
C2B
|
A:HEM602
|
4.3
|
17.1
|
1.0
|
ND1
|
A:HIS74
|
4.3
|
18.8
|
1.0
|
C2C
|
A:HEM602
|
4.3
|
18.6
|
1.0
|
C2D
|
A:HEM602
|
4.3
|
25.8
|
1.0
|
CD1
|
A:LEU48
|
4.3
|
32.7
|
1.0
|
C3C
|
A:HEM602
|
4.3
|
19.1
|
1.0
|
|
Iron binding site 3 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 3 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:32.4
occ:1.00
|
FE
|
A:HEM603
|
0.0
|
32.4
|
1.0
|
NA
|
A:HEM603
|
2.0
|
34.1
|
1.0
|
ND
|
A:HEM603
|
2.0
|
33.1
|
1.0
|
NC
|
A:HEM603
|
2.0
|
33.9
|
1.0
|
NB
|
A:HEM603
|
2.0
|
33.2
|
1.0
|
NE2
|
A:HIS77
|
2.1
|
18.0
|
1.0
|
NE2
|
A:HIS19
|
2.1
|
21.5
|
1.0
|
CD2
|
A:HIS19
|
2.9
|
22.1
|
1.0
|
CD2
|
A:HIS77
|
3.0
|
19.6
|
1.0
|
C4A
|
A:HEM603
|
3.0
|
33.8
|
1.0
|
C1B
|
A:HEM603
|
3.0
|
32.8
|
1.0
|
C1A
|
A:HEM603
|
3.0
|
35.4
|
1.0
|
C4C
|
A:HEM603
|
3.0
|
34.3
|
1.0
|
C4D
|
A:HEM603
|
3.0
|
31.0
|
1.0
|
C1D
|
A:HEM603
|
3.0
|
33.2
|
1.0
|
C1C
|
A:HEM603
|
3.1
|
34.1
|
1.0
|
CE1
|
A:HIS77
|
3.1
|
18.9
|
1.0
|
C4B
|
A:HEM603
|
3.1
|
32.3
|
1.0
|
CE1
|
A:HIS19
|
3.2
|
22.5
|
1.0
|
CHB
|
A:HEM603
|
3.4
|
33.6
|
1.0
|
CHD
|
A:HEM603
|
3.4
|
34.0
|
1.0
|
CHA
|
A:HEM603
|
3.4
|
33.2
|
1.0
|
CHC
|
A:HEM603
|
3.5
|
32.8
|
1.0
|
CG
|
A:HIS77
|
4.1
|
21.0
|
1.0
|
CG
|
A:HIS19
|
4.1
|
22.6
|
1.0
|
ND1
|
A:HIS77
|
4.2
|
19.4
|
1.0
|
ND1
|
A:HIS19
|
4.2
|
22.9
|
1.0
|
C3C
|
A:HEM603
|
4.3
|
34.8
|
1.0
|
C3A
|
A:HEM603
|
4.3
|
34.9
|
1.0
|
C2A
|
A:HEM603
|
4.3
|
36.0
|
1.0
|
C3D
|
A:HEM603
|
4.3
|
29.8
|
1.0
|
C2C
|
A:HEM603
|
4.3
|
34.3
|
1.0
|
C2D
|
A:HEM603
|
4.3
|
31.2
|
1.0
|
C2B
|
A:HEM603
|
4.3
|
31.4
|
1.0
|
C3B
|
A:HEM603
|
4.3
|
32.2
|
1.0
|
CB
|
A:ALA6
|
4.9
|
32.2
|
1.0
|
|
Iron binding site 4 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 4 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:20.1
occ:1.00
|
FE
|
A:HEM604
|
0.0
|
20.1
|
1.0
|
NE2
|
A:HIS42
|
1.9
|
12.2
|
1.0
|
NC
|
A:HEM604
|
1.9
|
21.0
|
1.0
|
NB
|
A:HEM604
|
2.0
|
23.4
|
1.0
|
NA
|
A:HEM604
|
2.0
|
27.3
|
1.0
|
ND
|
A:HEM604
|
2.0
|
24.2
|
1.0
|
NE2
|
A:HIS9
|
2.1
|
5.8
|
1.0
|
CE1
|
A:HIS42
|
2.7
|
14.0
|
1.0
|
CE1
|
A:HIS9
|
2.8
|
7.6
|
1.0
|
C1C
|
A:HEM604
|
2.9
|
22.4
|
1.0
|
C4A
|
A:HEM604
|
3.0
|
28.6
|
1.0
|
C4C
|
A:HEM604
|
3.0
|
21.6
|
1.0
|
C1B
|
A:HEM604
|
3.0
|
24.4
|
1.0
|
C4B
|
A:HEM604
|
3.0
|
21.6
|
1.0
|
CD2
|
A:HIS42
|
3.0
|
13.1
|
1.0
|
C1D
|
A:HEM604
|
3.0
|
24.4
|
1.0
|
C4D
|
A:HEM604
|
3.1
|
24.8
|
1.0
|
C1A
|
A:HEM604
|
3.1
|
28.7
|
1.0
|
CHC
|
A:HEM604
|
3.3
|
21.2
|
1.0
|
CD2
|
A:HIS9
|
3.4
|
9.1
|
1.0
|
CHB
|
A:HEM604
|
3.4
|
27.2
|
1.0
|
CHD
|
A:HEM604
|
3.4
|
23.8
|
1.0
|
CHA
|
A:HEM604
|
3.4
|
26.1
|
1.0
|
ND1
|
A:HIS42
|
3.9
|
15.9
|
1.0
|
ND1
|
A:HIS9
|
4.0
|
8.4
|
1.0
|
CG
|
A:HIS42
|
4.0
|
14.9
|
1.0
|
C2C
|
A:HEM604
|
4.2
|
22.4
|
1.0
|
C3C
|
A:HEM604
|
4.2
|
21.2
|
1.0
|
C3B
|
A:HEM604
|
4.2
|
22.5
|
1.0
|
C2B
|
A:HEM604
|
4.2
|
23.9
|
1.0
|
C3A
|
A:HEM604
|
4.2
|
30.7
|
1.0
|
C2D
|
A:HEM604
|
4.3
|
24.9
|
1.0
|
C3D
|
A:HEM604
|
4.3
|
24.7
|
1.0
|
C2A
|
A:HEM604
|
4.3
|
31.7
|
1.0
|
CG
|
A:HIS9
|
4.3
|
10.3
|
1.0
|
|
Iron binding site 5 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 5 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:35.3
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
35.3
|
1.0
|
ND
|
B:HEM601
|
2.0
|
39.3
|
1.0
|
NE2
|
B:HIS63
|
2.0
|
17.2
|
1.0
|
NA
|
B:HEM601
|
2.0
|
38.0
|
1.0
|
NC
|
B:HEM601
|
2.0
|
35.5
|
1.0
|
NB
|
B:HEM601
|
2.0
|
34.8
|
1.0
|
NE2
|
B:HIS88
|
2.1
|
25.9
|
1.0
|
CE1
|
B:HIS63
|
2.8
|
19.9
|
1.0
|
CE1
|
B:HIS88
|
2.8
|
25.2
|
1.0
|
C4D
|
B:HEM601
|
3.0
|
40.9
|
1.0
|
C1D
|
B:HEM601
|
3.0
|
39.9
|
1.0
|
C1A
|
B:HEM601
|
3.0
|
39.7
|
1.0
|
C4C
|
B:HEM601
|
3.0
|
34.8
|
1.0
|
C1C
|
B:HEM601
|
3.0
|
35.0
|
1.0
|
C1B
|
B:HEM601
|
3.0
|
35.0
|
1.0
|
C4B
|
B:HEM601
|
3.1
|
32.7
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
38.4
|
1.0
|
CD2
|
B:HIS63
|
3.1
|
19.2
|
1.0
|
CD2
|
B:HIS88
|
3.3
|
26.8
|
1.0
|
CHD
|
B:HEM601
|
3.3
|
37.8
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
40.2
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
36.7
|
1.0
|
CHC
|
B:HEM601
|
3.4
|
33.0
|
1.0
|
ND1
|
B:HIS63
|
4.0
|
21.9
|
1.0
|
ND1
|
B:HIS88
|
4.0
|
27.2
|
1.0
|
CG
|
B:HIS63
|
4.2
|
19.7
|
1.0
|
C3D
|
B:HEM601
|
4.2
|
42.5
|
1.0
|
C2D
|
B:HEM601
|
4.2
|
40.4
|
1.0
|
C3C
|
B:HEM601
|
4.2
|
35.7
|
1.0
|
C2A
|
B:HEM601
|
4.2
|
40.3
|
1.0
|
C2C
|
B:HEM601
|
4.2
|
34.9
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
33.3
|
1.0
|
C3A
|
B:HEM601
|
4.3
|
39.8
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
34.3
|
1.0
|
CG
|
B:HIS88
|
4.3
|
28.2
|
1.0
|
|
Iron binding site 6 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 6 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:25.6
occ:1.00
|
FE
|
B:HEM602
|
0.0
|
25.6
|
1.0
|
NA
|
B:HEM602
|
2.0
|
26.3
|
1.0
|
ND
|
B:HEM602
|
2.0
|
27.2
|
1.0
|
NB
|
B:HEM602
|
2.0
|
23.9
|
1.0
|
NC
|
B:HEM602
|
2.0
|
24.8
|
1.0
|
NE2
|
B:HIS74
|
2.2
|
29.5
|
1.0
|
NE2
|
B:HIS60
|
2.2
|
27.4
|
1.0
|
CD2
|
B:HIS74
|
2.9
|
30.2
|
1.0
|
CE1
|
B:HIS60
|
3.0
|
27.1
|
1.0
|
C1B
|
B:HEM602
|
3.0
|
24.4
|
1.0
|
C4A
|
B:HEM602
|
3.0
|
26.7
|
1.0
|
C1D
|
B:HEM602
|
3.0
|
27.6
|
1.0
|
C1C
|
B:HEM602
|
3.0
|
23.3
|
1.0
|
C4C
|
B:HEM602
|
3.0
|
24.6
|
1.0
|
C4D
|
B:HEM602
|
3.0
|
28.3
|
1.0
|
C4B
|
B:HEM602
|
3.0
|
22.9
|
1.0
|
C1A
|
B:HEM602
|
3.0
|
27.6
|
1.0
|
CE1
|
B:HIS74
|
3.3
|
30.4
|
1.0
|
CD2
|
B:HIS60
|
3.4
|
28.3
|
1.0
|
CHB
|
B:HEM602
|
3.4
|
25.8
|
1.0
|
CHD
|
B:HEM602
|
3.4
|
25.9
|
1.0
|
CHA
|
B:HEM602
|
3.4
|
28.0
|
1.0
|
CHC
|
B:HEM602
|
3.4
|
22.1
|
1.0
|
ND1
|
B:HIS60
|
4.2
|
27.0
|
1.0
|
CG
|
B:HIS74
|
4.2
|
29.9
|
1.0
|
C3B
|
B:HEM602
|
4.2
|
23.2
|
1.0
|
C2B
|
B:HEM602
|
4.2
|
25.1
|
1.0
|
C3D
|
B:HEM602
|
4.2
|
29.7
|
1.0
|
C2D
|
B:HEM602
|
4.2
|
28.8
|
1.0
|
C2C
|
B:HEM602
|
4.2
|
23.1
|
1.0
|
C3A
|
B:HEM602
|
4.2
|
27.2
|
1.0
|
C3C
|
B:HEM602
|
4.3
|
24.2
|
1.0
|
C2A
|
B:HEM602
|
4.3
|
27.7
|
1.0
|
ND1
|
B:HIS74
|
4.3
|
30.0
|
1.0
|
CG
|
B:HIS60
|
4.4
|
27.3
|
1.0
|
|
Iron binding site 7 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 7 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe603
b:43.1
occ:1.00
|
FE
|
B:HEM603
|
0.0
|
43.1
|
1.0
|
NC
|
B:HEM603
|
2.0
|
45.7
|
1.0
|
NE2
|
B:HIS19
|
2.0
|
35.1
|
1.0
|
ND
|
B:HEM603
|
2.0
|
43.3
|
1.0
|
NA
|
B:HEM603
|
2.0
|
43.5
|
1.0
|
NB
|
B:HEM603
|
2.0
|
46.6
|
1.0
|
NE2
|
B:HIS77
|
2.1
|
20.5
|
1.0
|
CD2
|
B:HIS19
|
2.9
|
36.8
|
1.0
|
CD2
|
B:HIS77
|
3.0
|
23.0
|
1.0
|
CE1
|
B:HIS19
|
3.0
|
37.5
|
1.0
|
C4C
|
B:HEM603
|
3.0
|
45.7
|
1.0
|
C4A
|
B:HEM603
|
3.0
|
43.7
|
1.0
|
C1D
|
B:HEM603
|
3.0
|
42.9
|
1.0
|
C4D
|
B:HEM603
|
3.0
|
42.4
|
1.0
|
C1C
|
B:HEM603
|
3.0
|
46.6
|
1.0
|
C1B
|
B:HEM603
|
3.1
|
46.6
|
1.0
|
C1A
|
B:HEM603
|
3.1
|
42.8
|
1.0
|
C4B
|
B:HEM603
|
3.1
|
46.3
|
1.0
|
CE1
|
B:HIS77
|
3.1
|
22.7
|
1.0
|
CHD
|
B:HEM603
|
3.4
|
44.9
|
1.0
|
CHA
|
B:HEM603
|
3.4
|
42.5
|
1.0
|
CHB
|
B:HEM603
|
3.4
|
45.4
|
1.0
|
CHC
|
B:HEM603
|
3.5
|
45.7
|
1.0
|
CG
|
B:HIS19
|
4.1
|
37.3
|
1.0
|
ND1
|
B:HIS19
|
4.1
|
37.6
|
1.0
|
CG
|
B:HIS77
|
4.2
|
23.7
|
1.0
|
ND1
|
B:HIS77
|
4.2
|
22.6
|
1.0
|
C3C
|
B:HEM603
|
4.2
|
46.2
|
1.0
|
C3D
|
B:HEM603
|
4.2
|
41.9
|
1.0
|
C2C
|
B:HEM603
|
4.3
|
46.8
|
1.0
|
C3A
|
B:HEM603
|
4.3
|
44.1
|
1.0
|
C2D
|
B:HEM603
|
4.3
|
42.0
|
1.0
|
C2A
|
B:HEM603
|
4.3
|
43.9
|
1.0
|
C2B
|
B:HEM603
|
4.3
|
47.1
|
1.0
|
C3B
|
B:HEM603
|
4.3
|
47.4
|
1.0
|
N
|
B:GLY25
|
4.8
|
47.1
|
1.0
|
|
Iron binding site 8 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 8 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe604
b:28.6
occ:1.00
|
FE
|
B:HEM604
|
0.0
|
28.6
|
1.0
|
NC
|
B:HEM604
|
2.0
|
27.8
|
1.0
|
ND
|
B:HEM604
|
2.0
|
31.1
|
1.0
|
NA
|
B:HEM604
|
2.0
|
30.5
|
1.0
|
NE2
|
B:HIS42
|
2.0
|
24.4
|
1.0
|
NB
|
B:HEM604
|
2.0
|
29.9
|
1.0
|
NE2
|
B:HIS9
|
2.4
|
34.7
|
1.0
|
CE1
|
B:HIS42
|
2.9
|
23.4
|
1.0
|
C4C
|
B:HEM604
|
3.0
|
28.1
|
1.0
|
C1C
|
B:HEM604
|
3.0
|
27.8
|
1.0
|
C1B
|
B:HEM604
|
3.0
|
30.4
|
1.0
|
C1A
|
B:HEM604
|
3.0
|
31.0
|
1.0
|
C1D
|
B:HEM604
|
3.0
|
30.6
|
1.0
|
C4D
|
B:HEM604
|
3.0
|
31.7
|
1.0
|
C4A
|
B:HEM604
|
3.0
|
29.9
|
1.0
|
C4B
|
B:HEM604
|
3.0
|
28.9
|
1.0
|
CD2
|
B:HIS42
|
3.0
|
25.2
|
1.0
|
CD2
|
B:HIS9
|
3.3
|
34.9
|
1.0
|
CHD
|
B:HEM604
|
3.3
|
29.4
|
1.0
|
CE1
|
B:HIS9
|
3.3
|
34.9
|
1.0
|
CHB
|
B:HEM604
|
3.4
|
29.3
|
1.0
|
CHC
|
B:HEM604
|
3.4
|
27.8
|
1.0
|
CHA
|
B:HEM604
|
3.4
|
30.6
|
1.0
|
ND1
|
B:HIS42
|
4.0
|
24.7
|
1.0
|
CG
|
B:HIS42
|
4.1
|
25.5
|
1.0
|
C3C
|
B:HEM604
|
4.2
|
28.5
|
1.0
|
C2C
|
B:HEM604
|
4.2
|
28.0
|
1.0
|
C2B
|
B:HEM604
|
4.2
|
30.5
|
1.0
|
C3B
|
B:HEM604
|
4.2
|
29.1
|
1.0
|
C2A
|
B:HEM604
|
4.2
|
32.4
|
1.0
|
C2D
|
B:HEM604
|
4.2
|
30.6
|
1.0
|
C3D
|
B:HEM604
|
4.2
|
31.8
|
1.0
|
C3A
|
B:HEM604
|
4.2
|
31.1
|
1.0
|
ND1
|
B:HIS9
|
4.4
|
35.9
|
1.0
|
CG
|
B:HIS9
|
4.4
|
35.1
|
1.0
|
|
Iron binding site 9 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 9 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe601
b:26.9
occ:1.00
|
FE
|
C:HEM601
|
0.0
|
26.9
|
1.0
|
ND
|
C:HEM601
|
2.0
|
30.4
|
1.0
|
NA
|
C:HEM601
|
2.0
|
27.7
|
1.0
|
NC
|
C:HEM601
|
2.0
|
27.4
|
1.0
|
NE2
|
C:HIS88
|
2.0
|
12.6
|
1.0
|
NB
|
C:HEM601
|
2.0
|
27.7
|
1.0
|
NE2
|
C:HIS63
|
2.1
|
16.6
|
1.0
|
CE1
|
C:HIS63
|
2.9
|
17.2
|
1.0
|
CD2
|
C:HIS88
|
2.9
|
15.0
|
1.0
|
C1A
|
C:HEM601
|
3.0
|
28.3
|
1.0
|
C4D
|
C:HEM601
|
3.0
|
31.3
|
1.0
|
C1D
|
C:HEM601
|
3.0
|
31.6
|
1.0
|
CE1
|
C:HIS88
|
3.0
|
13.3
|
1.0
|
C4C
|
C:HEM601
|
3.0
|
27.6
|
1.0
|
C1B
|
C:HEM601
|
3.0
|
26.6
|
1.0
|
C4A
|
C:HEM601
|
3.1
|
27.7
|
1.0
|
C4B
|
C:HEM601
|
3.1
|
27.6
|
1.0
|
C1C
|
C:HEM601
|
3.1
|
26.2
|
1.0
|
CD2
|
C:HIS63
|
3.2
|
18.3
|
1.0
|
CHA
|
C:HEM601
|
3.3
|
30.1
|
1.0
|
CHB
|
C:HEM601
|
3.4
|
27.4
|
1.0
|
CHD
|
C:HEM601
|
3.4
|
29.4
|
1.0
|
CHC
|
C:HEM601
|
3.4
|
27.4
|
1.0
|
CG
|
C:HIS88
|
4.1
|
16.2
|
1.0
|
ND1
|
C:HIS63
|
4.1
|
18.8
|
1.0
|
ND1
|
C:HIS88
|
4.1
|
14.7
|
1.0
|
C2A
|
C:HEM601
|
4.2
|
27.5
|
1.0
|
C3D
|
C:HEM601
|
4.2
|
33.1
|
1.0
|
C2D
|
C:HEM601
|
4.2
|
32.3
|
1.0
|
C3B
|
C:HEM601
|
4.3
|
26.4
|
1.0
|
C3C
|
C:HEM601
|
4.3
|
26.0
|
1.0
|
C3A
|
C:HEM601
|
4.3
|
26.8
|
1.0
|
C2B
|
C:HEM601
|
4.3
|
26.2
|
1.0
|
CG
|
C:HIS63
|
4.3
|
17.6
|
1.0
|
C2C
|
C:HEM601
|
4.3
|
24.7
|
1.0
|
CE1
|
C:PHE90
|
5.0
|
27.3
|
1.0
|
|
Iron binding site 10 out
of 16 in 1d4c
Go back to
Iron Binding Sites List in 1d4c
Iron binding site 10 out
of 16 in the Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Uncomplexed Form of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Strain Mr-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe602
b:16.4
occ:1.00
|
FE
|
C:HEM602
|
0.0
|
16.4
|
1.0
|
ND
|
C:HEM602
|
2.0
|
19.0
|
1.0
|
NB
|
C:HEM602
|
2.0
|
14.5
|
1.0
|
NC
|
C:HEM602
|
2.0
|
16.3
|
1.0
|
NA
|
C:HEM602
|
2.0
|
18.4
|
1.0
|
NE2
|
C:HIS74
|
2.1
|
22.4
|
1.0
|
NE2
|
C:HIS60
|
2.1
|
25.0
|
1.0
|
C1D
|
C:HEM602
|
3.0
|
19.9
|
1.0
|
C4B
|
C:HEM602
|
3.0
|
14.4
|
1.0
|
CE1
|
C:HIS60
|
3.0
|
25.8
|
1.0
|
C4D
|
C:HEM602
|
3.0
|
21.1
|
1.0
|
C1B
|
C:HEM602
|
3.0
|
14.3
|
1.0
|
C4C
|
C:HEM602
|
3.0
|
16.2
|
1.0
|
CD2
|
C:HIS74
|
3.0
|
22.2
|
1.0
|
CE1
|
C:HIS74
|
3.0
|
24.6
|
1.0
|
C1C
|
C:HEM602
|
3.1
|
15.6
|
1.0
|
C1A
|
C:HEM602
|
3.1
|
17.9
|
1.0
|
C4A
|
C:HEM602
|
3.1
|
16.1
|
1.0
|
CD2
|
C:HIS60
|
3.1
|
26.8
|
1.0
|
CHD
|
C:HEM602
|
3.3
|
19.0
|
1.0
|
CHC
|
C:HEM602
|
3.4
|
16.0
|
1.0
|
CHB
|
C:HEM602
|
3.4
|
16.0
|
1.0
|
CHA
|
C:HEM602
|
3.5
|
18.1
|
1.0
|
ND1
|
C:HIS60
|
4.2
|
26.8
|
1.0
|
CG
|
C:HIS74
|
4.2
|
22.4
|
1.0
|
ND1
|
C:HIS74
|
4.2
|
23.4
|
1.0
|
C2D
|
C:HEM602
|
4.2
|
22.6
|
1.0
|
C3B
|
C:HEM602
|
4.2
|
13.1
|
1.0
|
C3D
|
C:HEM602
|
4.2
|
25.2
|
1.0
|
C3C
|
C:HEM602
|
4.2
|
14.6
|
1.0
|
C2B
|
C:HEM602
|
4.2
|
13.6
|
1.0
|
CG
|
C:HIS60
|
4.2
|
26.4
|
1.0
|
C2C
|
C:HEM602
|
4.3
|
13.9
|
1.0
|
C2A
|
C:HEM602
|
4.3
|
17.4
|
1.0
|
C3A
|
C:HEM602
|
4.3
|
16.6
|
1.0
|
CD1
|
C:LEU48
|
4.6
|
28.2
|
1.0
|
|
Reference:
D.Leys,
A.S.Tsapin,
K.H.Nealson,
T.E.Meyer,
M.A.Cusanovich,
J.J.Van Beeumen.
Structure and Mechanism of the Flavocytochrome C Fumarate Reductase of Shewanella Putrefaciens Mr-1. Nat.Struct.Biol. V. 6 1113 1999.
ISSN: ISSN 1072-8368
PubMed: 10581551
DOI: 10.1038/70051
Page generated: Sat Aug 3 03:36:58 2024
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