Iron in PDB 1d8u: Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice

The structure of Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice, PDB code: 1d8u was solved by M.Hargrove, E.A.Brucker, B.Stec, J.S.Olson, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.35
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	126.800, 126.800, 55.500, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 26.1

The binding sites of Iron atom in the Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice (pdb code 1d8u). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice, PDB code: 1d8u:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe166 b:48.4 occ:1.00 FE A:HEM166 0.0 48.4 1.0 ND A:HEM166 2.0 33.0 1.0 NB A:HEM166 2.0 32.2 1.0 NC A:HEM166 2.0 37.9 1.0 NA A:HEM166 2.0 43.4 1.0 NE2 A:HIS108 2.1 25.0 1.0 NE2 A:HIS73 2.1 22.9 1.0 C4D A:HEM166 3.0 31.6 1.0 C1D A:HEM166 3.0 31.7 1.0 C4C A:HEM166 3.0 27.9 1.0 C1B A:HEM166 3.0 36.0 1.0 C4B A:HEM166 3.0 34.0 1.0 C1C A:HEM166 3.0 37.2 1.0 C1A A:HEM166 3.0 40.2 1.0 C4A A:HEM166 3.0 38.2 1.0 CD2 A:HIS108 3.0 34.7 1.0 CD2 A:HIS73 3.1 33.5 1.0 CE1 A:HIS108 3.1 31.6 1.0 CE1 A:HIS73 3.1 23.5 1.0 CHA A:HEM166 3.4 31.8 1.0 CHD A:HEM166 3.4 34.7 1.0 CHC A:HEM166 3.4 30.0 1.0 CHB A:HEM166 3.4 35.2 1.0 CG A:HIS108 4.2 35.8 1.0 CG A:HIS73 4.2 29.1 1.0 ND1 A:HIS108 4.2 30.4 1.0 C2D A:HEM166 4.2 35.8 1.0 C3D A:HEM166 4.2 39.6 1.0 ND1 A:HIS73 4.2 32.2 1.0 C2B A:HEM166 4.2 32.6 1.0 C3C A:HEM166 4.3 29.5 1.0 C3B A:HEM166 4.3 27.2 1.0 C2C A:HEM166 4.3 28.8 1.0 C3A A:HEM166 4.3 38.3 1.0 C2A A:HEM166 4.3 46.3 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Non-Symbiotic Plant Hemoglobin From Rice within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe166 b:58.1 occ:1.00 FE B:HEM166 0.0 58.1 1.0 ND B:HEM166 2.0 43.8 1.0 NB B:HEM166 2.0 49.0 1.0 NA B:HEM166 2.0 59.4 1.0 NC B:HEM166 2.0 49.4 1.0 NE2 B:HIS73 2.0 36.8 1.0 NE2 B:HIS108 2.1 22.7 1.0 CD2 B:HIS73 3.0 46.2 1.0 C4D B:HEM166 3.0 50.7 1.0 C1D B:HEM166 3.0 50.1 1.0 C1B B:HEM166 3.0 51.5 1.0 C1A B:HEM166 3.0 58.1 1.0 C4C B:HEM166 3.0 42.8 1.0 C4B B:HEM166 3.0 42.5 1.0 C4A B:HEM166 3.0 59.3 1.0 C1C B:HEM166 3.0 45.0 1.0 CE1 B:HIS73 3.1 45.9 1.0 CD2 B:HIS108 3.1 38.4 1.0 CE1 B:HIS108 3.1 40.2 1.0 CHA B:HEM166 3.4 45.0 1.0 CHD B:HEM166 3.4 44.4 1.0 CHB B:HEM166 3.4 55.2 1.0 CHC B:HEM166 3.4 41.4 1.0 CG B:HIS73 4.1 31.6 1.0 ND1 B:HIS73 4.2 40.9 1.0 C3D B:HEM166 4.2 54.4 1.0 C2D B:HEM166 4.2 53.4 1.0 CG B:HIS108 4.2 33.9 1.0 C2B B:HEM166 4.3 45.2 1.0 C3C B:HEM166 4.3 50.8 1.0 C3B B:HEM166 4.3 42.1 1.0 C2A B:HEM166 4.3 63.1 1.0 C3A B:HEM166 4.3 58.6 1.0 ND1 B:HIS108 4.3 32.1 1.0 C2C B:HEM166 4.3 46.8 1.0

M.S.Hargrove, E.A.Brucker, B.Stec, G.Sarath, R.Arredondo-Peter, R.V.Klucas, J.S.Olson, G.N.Phillips Jr.. Crystal Structure of A Nonsymbiotic Plant Hemoglobin. Structure Fold.Des. V. 8 1005 2000.
ISSN: ISSN 0969-2126
PubMed: 10986467
DOI: 10.1016/S0969-2126(00)00194-5