Iron in PDB 1dax: Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure

The binding sites of Iron atom in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure (pdb code 1dax). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure, PDB code: 1dax:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe65 b:0.2 occ:1.00 FE1 A:SF465 0.0 0.2 1.0 S4 A:SF465 2.0 0.3 1.0 SG A:CYS11 2.2 0.3 1.0 S2 A:SF465 2.2 0.2 1.0 S3 A:SF465 2.5 0.2 1.0 FE3 A:SF465 2.6 0.2 1.0 FE2 A:SF465 2.8 0.2 1.0 FE4 A:SF465 2.9 0.2 1.0 HB2 A:CYS11 3.1 0.3 1.0 CB A:CYS11 3.2 0.3 1.0 HA A:CYS11 3.3 0.4 1.0 HB1 A:ALA34 3.6 1.3 1.0 HB2 A:ALA34 3.6 0.9 1.0 H A:ALA34 3.7 0.4 1.0 CA A:CYS11 3.7 0.4 1.0 H A:CYS14 3.8 0.9 1.0 O A:CYS14 3.8 1.1 1.0 S1 A:SF465 3.9 0.2 1.0 H A:ILE12 4.0 0.6 1.0 HB3 A:CYS11 4.1 0.3 1.0 CB A:ALA34 4.1 0.5 1.0 H A:ALA13 4.2 1.3 1.0 C A:CYS11 4.3 0.4 1.0 N A:ILE12 4.3 0.5 1.0 HG12 A:ILE12 4.4 0.8 1.0 N A:CYS14 4.5 0.6 1.0 N A:ALA34 4.6 0.3 1.0 SG A:CYS58 4.6 1.9 1.0 HG A:CYS58 4.6 2.4 1.0 N A:ALA13 4.6 0.9 1.0 HG2 A:LYS33 4.7 0.9 1.0 SG A:CYS17 4.7 0.2 1.0 HA A:ALA13 4.8 1.1 1.0 HG13 A:ILE12 4.8 1.1 1.0 SG A:CYS54 4.9 0.3 1.0 HB3 A:LYS33 4.9 0.3 1.0 C A:CYS14 4.9 0.5 1.0 SG A:CYS14 4.9 0.3 1.0 HB3 A:ALA34 5.0 1.1 1.0 CA A:ALA34 5.0 0.3 1.0

Iron binding site 2 out of 4 in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe65 b:0.2 occ:1.00 FE2 A:SF465 0.0 0.2 1.0 SG A:CYS14 2.2 0.3 1.0 S3 A:SF465 2.2 0.2 1.0 O A:CYS14 2.4 1.1 1.0 S4 A:SF465 2.5 0.3 1.0 S1 A:SF465 2.5 0.2 1.0 FE1 A:SF465 2.8 0.2 1.0 FE4 A:SF465 2.9 0.2 1.0 FE3 A:SF465 3.0 0.2 1.0 H A:CYS14 3.0 0.9 1.0 C A:CYS14 3.1 0.5 1.0 CB A:CYS14 3.2 0.4 1.0 HB2 A:SER16 3.3 1.0 1.0 CA A:CYS14 3.5 0.5 1.0 HB3 A:CYS14 3.5 0.4 1.0 H A:SER16 3.5 0.7 1.0 N A:CYS14 3.5 0.6 1.0 H A:CYS17 3.6 0.3 1.0 S2 A:SF465 4.1 0.2 1.0 N A:SER16 4.1 0.4 1.0 HG12 A:ILE12 4.2 0.8 1.0 HB2 A:CYS14 4.2 0.5 1.0 H A:ALA13 4.2 1.3 1.0 N A:GLU15 4.2 0.6 1.0 HD3 A:PRO55 4.2 0.7 1.0 HG13 A:ILE12 4.3 1.1 1.0 HD2 A:PRO55 4.3 0.6 1.0 CB A:SER16 4.3 0.4 1.0 HA A:CYS54 4.4 0.5 1.0 HA A:GLU15 4.5 0.8 1.0 HD12 A:ILE12 4.5 1.9 1.0 HA A:CYS14 4.6 0.6 1.0 N A:CYS17 4.6 0.3 1.0 SG A:CYS11 4.6 0.3 1.0 HB3 A:CYS17 4.6 0.2 1.0 CG1 A:ILE12 4.7 0.8 1.0 SG A:CYS17 4.7 0.2 1.0 C A:ALA13 4.7 0.8 1.0 CA A:GLU15 4.7 0.7 1.0 C A:GLU15 4.7 0.5 1.0 CD A:PRO55 4.8 0.6 1.0 CA A:SER16 4.8 0.4 1.0 OG A:SER16 4.8 1.2 1.0 SG A:CYS54 4.8 0.3 1.0 H A:ILE12 4.9 0.6 1.0 HG A:SER16 4.9 1.6 1.0 HB1 A:ALA34 4.9 1.3 1.0 H A:GLU15 4.9 1.0 1.0 N A:ALA13 5.0 0.9 1.0

Iron binding site 3 out of 4 in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe65 b:0.2 occ:1.00 FE3 A:SF465 0.0 0.2 1.0 SG A:CYS17 2.2 0.2 1.0 S2 A:SF465 2.2 0.2 1.0 S4 A:SF465 2.2 0.3 1.0 S1 A:SF465 2.5 0.2 1.0 FE1 A:SF465 2.6 0.2 1.0 FE4 A:SF465 2.8 0.2 1.0 HB3 A:CYS17 2.9 0.2 1.0 HB2 A:ALA34 2.9 0.9 1.0 FE2 A:SF465 3.0 0.2 1.0 CB A:CYS17 3.2 0.2 1.0 H A:CYS17 3.3 0.3 1.0 HB1 A:ALA34 3.3 1.3 1.0 CB A:ALA34 3.5 0.5 1.0 H A:VAL18 3.7 0.3 1.0 O A:CYS14 3.8 1.1 1.0 HB3 A:ALA34 3.8 1.1 1.0 HB2 A:CYS17 3.9 0.3 1.0 S3 A:SF465 4.0 0.2 1.0 HG22 A:VAL18 4.0 1.6 1.0 N A:CYS17 4.0 0.3 1.0 CA A:CYS17 4.2 0.2 1.0 SG A:CYS11 4.5 0.3 1.0 N A:VAL18 4.5 0.2 1.0 CE1 A:PHE25 4.6 1.4 1.0 CD1 A:PHE25 4.6 1.3 1.0 HB2 A:SER16 4.7 1.0 1.0 HB2 A:CYS54 4.7 0.4 1.0 HE1 A:PHE25 4.7 2.2 1.0 HA A:GLU15 4.7 0.8 1.0 H A:ALA34 4.7 0.4 1.0 HD1 A:PHE25 4.8 2.1 1.0 SG A:CYS54 4.8 0.3 1.0 CZ A:PHE25 4.9 0.7 1.0 C A:CYS17 4.9 0.2 1.0 SG A:CYS14 4.9 0.3 1.0 CA A:ALA34 4.9 0.3 1.0 CG A:PHE25 4.9 0.4 1.0 C A:CYS14 5.0 0.5 1.0 HB2 A:CYS11 5.0 0.3 1.0

Iron binding site 4 out of 4 in the Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Oxidised Desulfovibrio Africanus Ferredoxin I, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe65 b:0.2 occ:1.00 FE4 A:SF465 0.0 0.2 1.0 SG A:CYS54 2.2 0.3 1.0 S1 A:SF465 2.2 0.2 1.0 S3 A:SF465 2.4 0.2 1.0 S2 A:SF465 2.5 0.2 1.0 FE3 A:SF465 2.8 0.2 1.0 HD2 A:PRO55 2.9 0.6 1.0 FE1 A:SF465 2.9 0.2 1.0 FE2 A:SF465 2.9 0.2 1.0 HB2 A:CYS54 3.1 0.4 1.0 CB A:CYS54 3.2 0.3 1.0 HA A:CYS54 3.3 0.5 1.0 HG A:CYS58 3.8 2.4 1.0 CD A:PRO55 3.8 0.6 1.0 CA A:CYS54 3.8 0.4 1.0 HD3 A:PRO55 3.9 0.7 1.0 SG A:CYS58 3.9 1.9 1.0 S4 A:SF465 3.9 0.3 1.0 HB3 A:CYS17 4.0 0.2 1.0 HB3 A:CYS54 4.1 0.4 1.0 HA A:CYS11 4.2 0.4 1.0 H A:CYS58 4.3 1.1 1.0 H A:CYS17 4.5 0.3 1.0 SG A:CYS14 4.6 0.3 1.0 H A:GLN57 4.6 0.7 1.0 HB2 A:SER16 4.7 1.0 1.0 N A:PRO55 4.7 0.5 1.0 SG A:CYS17 4.7 0.2 1.0 HB2 A:CYS11 4.8 0.3 1.0 HG2 A:PRO55 4.8 0.7 1.0 HG21 A:VAL56 4.8 2.2 1.0 C A:CYS54 4.8 0.5 1.0 CB A:CYS17 4.8 0.2 1.0 CG A:PRO55 4.9 0.7 1.0 HG12 A:ILE12 4.9 0.8 1.0 N A:CYS54 4.9 0.5 1.0 SG A:CYS11 4.9 0.3 1.0 H A:ILE12 4.9 0.6 1.0 HA A:GLN57 5.0 0.6 1.0 H A:VAL56 5.0 1.0 1.0

S.L.Davy, M.J.Osborne, G.R.Moore. Determination of the Structure of Oxidised Desulfovibrio Africanus Ferredoxin I By 1H uc(Nmr) Spectroscopy and Comparison of Its Solution Structure with Its Crystal Structure. J.Mol.Biol. V. 277 683 1998.
ISSN: ISSN 0022-2836
PubMed: 9533888
DOI: 10.1006/JMBI.1998.1631