Atomistry » Iron » PDB 1dxt-1ea1 » 1e2u
Atomistry »
  Iron »
    PDB 1dxt-1ea1 »
      1e2u »

Iron in PDB 1e2u: Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A

Protein crystallography data

The structure of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A, PDB code: 1e2u was solved by S.J.Cooper, S.Bailey, W.R.Hagen, P.F.Lindley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.630, 64.680, 152.290, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 18.4

Iron Binding Sites:

The binding sites of Iron atom in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A (pdb code 1e2u). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A, PDB code: 1e2u:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 1 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe700

b:8.2
occ:1.00
FE1 A:SF4700 0.0 8.2 1.0
S4 A:SF4700 2.2 4.8 1.0
S2 A:SF4700 2.3 4.8 1.0
S3 A:SF4700 2.3 4.9 1.0
SG A:CYS3 2.3 5.4 1.0
FE4 A:SF4700 2.7 8.2 1.0
FE3 A:SF4700 2.7 8.2 1.0
FE2 A:SF4700 2.7 8.5 1.0
CB A:CYS3 3.3 6.6 1.0
S1 A:SF4700 3.9 5.6 1.0
NZ A:LYS23 4.0 8.9 1.0
C A:CYS3 4.0 6.6 1.0
O A:CYS3 4.1 7.3 1.0
CG A:GLN5 4.1 7.7 1.0
CE A:LYS23 4.2 7.1 1.0
CA A:CYS3 4.2 6.6 1.0
N A:GLN5 4.3 6.4 1.0
N A:PHE4 4.4 6.5 1.0
NE2 A:GLN5 4.6 6.4 1.0
SG A:CYS15 4.7 6.1 1.0
N A:CYS6 4.8 7.3 1.0
CA A:PHE4 4.9 6.9 1.0
SG A:CYS6 4.9 5.4 1.0
SG A:CYS21 4.9 5.7 1.0
CD A:GLN5 4.9 7.0 1.0
O A:HOH2048 5.0 8.1 1.0
C A:PHE4 5.0 7.1 1.0

Iron binding site 2 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 2 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe700

b:8.5
occ:1.00
FE2 A:SF4700 0.0 8.5 1.0
S3 A:SF4700 2.3 4.9 1.0
S1 A:SF4700 2.3 5.6 1.0
S4 A:SF4700 2.3 4.8 1.0
SG A:CYS21 2.3 5.7 1.0
FE3 A:SF4700 2.7 8.2 1.0
FE4 A:SF4700 2.7 8.2 1.0
FE1 A:SF4700 2.7 8.2 1.0
CB A:CYS21 3.3 7.2 1.0
S2 A:SF4700 3.9 4.8 1.0
N A:CYS21 3.9 7.8 1.0
CA A:GLY19 4.2 8.0 1.0
CA A:CYS21 4.3 7.0 1.0
CE A:LYS23 4.4 7.1 1.0
O A:HOH2134 4.4 7.7 1.0
N A:MET20 4.4 8.7 1.0
SG A:CYS6 4.5 5.4 1.0
CB A:LYS23 4.6 6.6 1.0
C A:GLY19 4.6 8.5 1.0
SG A:CYS15 4.7 6.1 1.0
CG2 A:THR71 4.8 6.6 1.0
SG A:CYS3 4.8 5.4 1.0
NZ A:LYS23 4.9 8.9 1.0
O A:HOH2587 4.9 11.7 1.0

Iron binding site 3 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 3 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe700

b:8.2
occ:1.00
FE3 A:SF4700 0.0 8.2 1.0
S2 A:SF4700 2.2 4.8 1.0
SG A:CYS6 2.3 5.4 1.0
S1 A:SF4700 2.3 5.6 1.0
S4 A:SF4700 2.3 4.8 1.0
FE2 A:SF4700 2.7 8.5 1.0
FE4 A:SF4700 2.7 8.2 1.0
FE1 A:SF4700 2.7 8.2 1.0
CB A:CYS6 3.2 7.9 1.0
N A:CYS6 3.7 7.3 1.0
S3 A:SF4700 3.8 4.9 1.0
CA A:CYS6 4.0 7.5 1.0
OG1 A:THR71 4.4 5.8 1.0
C A:CYS6 4.4 6.9 1.0
N A:THR9 4.5 8.1 1.0
O A:CYS6 4.5 7.1 1.0
CG2 A:THR71 4.5 6.6 1.0
CA A:THR9 4.6 8.1 1.0
O A:HOH2587 4.7 11.7 1.0
SG A:CYS21 4.7 5.7 1.0
CB A:THR9 4.8 8.2 1.0
SG A:CYS3 4.9 5.4 1.0
C A:GLN5 4.9 7.4 1.0
SG A:CYS15 4.9 6.1 1.0
C A:GLU8 4.9 6.9 1.0
N A:GLN5 4.9 6.4 1.0
CG A:GLN5 4.9 7.7 1.0
CB A:CYS21 4.9 7.2 1.0

Iron binding site 4 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 4 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe700

b:8.2
occ:1.00
FE4 A:SF4700 0.0 8.2 1.0
S1 A:SF4700 2.3 5.6 1.0
S3 A:SF4700 2.3 4.9 1.0
S2 A:SF4700 2.3 4.8 1.0
SG A:CYS15 2.3 6.1 1.0
FE1 A:SF4700 2.7 8.2 1.0
FE2 A:SF4700 2.7 8.5 1.0
FE3 A:SF4700 2.7 8.2 1.0
CB A:CYS15 3.3 9.1 1.0
S4 A:SF4700 3.9 4.8 1.0
N A:MET20 3.9 8.7 1.0
CA A:GLY19 4.1 8.0 1.0
O A:CYS3 4.1 7.3 1.0
OG1 A:THR9 4.1 6.5 1.0
CA A:THR9 4.1 8.1 1.0
CB A:THR9 4.4 8.2 1.0
C A:GLY19 4.5 8.5 1.0
CA A:CYS15 4.6 7.8 1.0
SG A:CYS3 4.6 5.4 1.0
SG A:CYS6 4.7 5.4 1.0
N A:CYS15 4.7 7.4 1.0
CB A:CYS3 4.7 6.6 1.0
N A:THR9 4.7 8.1 1.0
C A:CYS3 4.7 6.6 1.0
SG A:CYS21 4.8 5.7 1.0
N A:ALA10 4.9 7.2 1.0
N A:CYS21 4.9 7.8 1.0
CB A:MET20 4.9 9.9 1.0
CA A:MET20 5.0 8.4 1.0

Iron binding site 5 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 5 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:10.1
occ:1.00
FE5 A:FSO701 0.0 10.1 1.0
O10 A:FSO701 1.8 6.5 0.5
O10 A:FSO701 2.1 8.0 0.5
SG A:CYS434 2.3 7.0 1.0
S5 A:FSO701 2.3 7.7 1.0
S6 A:FSO701 2.3 7.2 1.0
FE6 A:FSO701 2.7 10.6 1.0
FE8 A:FSO701 3.1 11.8 1.0
CB A:CYS434 3.4 8.3 1.0
O8 A:FSO701 3.5 9.0 1.0
FE7 A:FSO701 3.7 8.7 1.0
CG A:GLU268 3.8 6.5 1.0
CD1 A:TRP292 3.9 8.3 1.0
O9 A:FSO701 4.2 10.2 1.0
SG A:CSS406 4.2 7.4 1.0
CB A:CSS406 4.2 8.7 1.0
N A:CYS434 4.3 7.2 1.0
NE1 A:TRP292 4.4 8.9 1.0
OE2 A:GLU268 4.4 8.8 1.0
CA A:CYS434 4.4 7.5 1.0
CD A:GLU268 4.4 9.2 1.0
O A:HOH2630 4.5 52.4 1.0
SD A:CSS406 4.5 9.9 1.0
CA A:CSS406 4.7 7.5 1.0
CE1 A:HIS244 4.8 7.7 1.0
NE2 A:HIS244 4.8 5.8 1.0
CG A:TRP292 4.9 7.2 1.0
SG A:CYS312 4.9 6.8 1.0

Iron binding site 6 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 6 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:10.6
occ:1.00
FE6 A:FSO701 0.0 10.6 1.0
O8 A:FSO701 2.0 9.0 1.0
S5 A:FSO701 2.2 7.7 1.0
S6 A:FSO701 2.3 7.2 1.0
SG A:CYS312 2.4 6.8 1.0
O A:HOH2630 2.5 52.4 1.0
FE5 A:FSO701 2.7 10.1 1.0
FE8 A:FSO701 3.1 11.8 1.0
CB A:CYS312 3.5 7.9 1.0
O10 A:FSO701 3.5 6.5 0.5
N A:CYS312 3.6 6.2 1.0
CD1 A:TRP292 3.9 8.3 1.0
OE2 A:GLU494 4.1 10.0 1.0
ND2 A:ASN311 4.1 7.6 1.0
CA A:CYS312 4.1 7.1 1.0
C A:ASN311 4.2 7.3 1.0
CG A:TRP292 4.2 7.2 1.0
O10 A:FSO701 4.3 8.0 0.5
O A:ASN311 4.3 8.0 1.0
NE1 A:TRP292 4.3 8.9 1.0
O9 A:FSO701 4.4 10.2 1.0
SG A:CYS434 4.6 7.0 1.0
CB A:TRP292 4.6 6.6 1.0
CG A:ASN311 4.6 6.1 1.0
CE1 A:HIS244 4.7 7.7 1.0
CD2 A:TRP292 4.8 8.8 1.0
CG A:GLU494 4.8 9.3 1.0
CE2 A:TRP292 4.8 8.2 1.0
CD A:GLU494 4.9 10.9 1.0
FE7 A:FSO701 5.0 8.7 1.0

Iron binding site 7 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 7 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:8.7
occ:1.00
FE7 A:FSO701 0.0 8.7 1.0
O10 A:FSO701 1.9 6.5 0.5
O10 A:FSO701 2.1 8.0 0.5
NE2 A:HIS244 2.1 5.8 1.0
O9 A:FSO701 2.1 10.2 1.0
OE2 A:GLU268 2.1 8.8 1.0
SG A:CYS459 2.4 6.7 1.0
CE1 A:HIS244 3.0 7.7 1.0
CD A:GLU268 3.1 9.2 1.0
CD2 A:HIS244 3.2 6.5 1.0
CG A:GLU268 3.3 6.5 1.0
FE8 A:FSO701 3.3 11.8 1.0
CB A:CYS459 3.4 7.0 1.0
FE5 A:FSO701 3.7 10.1 1.0
N A:CYS459 4.0 6.2 1.0
O8 A:FSO701 4.0 9.0 1.0
ND1 A:HIS244 4.2 6.7 1.0
CB A:GLU268 4.2 6.5 1.0
OE1 A:GLU268 4.2 7.1 1.0
CG A:HIS244 4.3 6.2 1.0
CA A:CYS459 4.3 6.1 1.0
SG A:CSS406 4.4 7.4 1.0
NZ A:LYS496 4.4 9.6 1.0
SD A:CSS406 4.5 9.9 1.0
S5 A:FSO701 4.7 7.7 1.0
S6 A:FSO701 4.9 7.2 1.0
CA A:GLY433 4.9 6.5 1.0
OE2 A:GLU494 4.9 10.0 1.0
FE6 A:FSO701 5.0 10.6 1.0
N A:CYS434 5.0 7.2 1.0

Iron binding site 8 out of 8 in 1e2u

Go back to Iron Binding Sites List in 1e2u
Iron binding site 8 out of 8 in the Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Low Temperature Structure of Hybrid Cluster Protein From Desulfovibrio Vulgaris to 1.6A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:11.8
occ:1.00
FE8 A:FSO701 0.0 11.8 1.0
O9 A:FSO701 2.0 10.2 1.0
OE2 A:GLU494 2.0 10.0 1.0
O8 A:FSO701 2.2 9.0 1.0
O10 A:FSO701 2.4 6.5 0.5
S6 A:FSO701 2.5 7.2 1.0
SD A:CSS406 2.5 9.9 1.0
O A:HOH2630 2.9 52.4 1.0
CD A:GLU494 3.0 10.9 1.0
FE6 A:FSO701 3.1 10.6 1.0
FE5 A:FSO701 3.1 10.1 1.0
O10 A:FSO701 3.2 8.0 0.5
FE7 A:FSO701 3.3 8.7 1.0
CG A:GLU494 3.6 9.3 1.0
SG A:CSS406 3.6 7.4 1.0
NZ A:LYS496 4.0 9.6 1.0
OE1 A:GLU494 4.1 10.2 1.0
ND2 A:ASN311 4.2 7.6 1.0
S5 A:FSO701 4.3 7.7 1.0
CE1 A:HIS244 4.3 7.7 1.0
CB A:CSS406 4.4 8.7 1.0
CE A:LYS496 4.4 8.2 1.0
NE2 A:HIS244 4.4 5.8 1.0
SG A:CYS459 4.6 6.7 1.0
CB A:LYS496 4.7 5.6 1.0
SG A:CYS312 4.8 6.8 1.0
CD A:LYS496 4.9 7.9 1.0
CG A:ASN311 5.0 6.1 1.0

Reference:

S.J.Cooper, C.D.Garner, W.R.Hagen, P.F.Lindley, S.Bailey. Hybrid-Cluster Protein (Hcp) From Desulfovibrio Vulgaris (Hildenborough) at 1.6 A Resolution. Biochemistry V. 39 15044 2000.
ISSN: ISSN 0006-2960
PubMed: 11106482
DOI: 10.1021/BI001483M
Page generated: Sun Dec 13 14:11:57 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy