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Iron in PDB 1e2v: N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii

Protein crystallography data

The structure of N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1e2v was solved by G.Sainz, C.J.Carrell, M.V.Ponamarev, G.M.Soriano, W.A.Cramer, J.L.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.33 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.120, 94.220, 121.080, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii (pdb code 1e2v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1e2v:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 1e2v

Go back to Iron Binding Sites List in 1e2v
Iron binding site 1 out of 3 in the N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe900

b:12.8
occ:1.00
FE A:HEC900 0.0 12.8 1.0
ND A:HEC900 2.0 12.0 1.0
NA A:HEC900 2.0 10.8 1.0
NC A:HEC900 2.0 12.4 1.0
NB A:HEC900 2.0 9.6 1.0
NE2 A:HIS25 2.1 11.3 1.0
N A:TYR1 2.2 12.3 1.0
C4D A:HEC900 3.0 12.9 1.0
C1D A:HEC900 3.0 11.3 1.0
C4A A:HEC900 3.0 11.5 1.0
CE1 A:HIS25 3.0 11.5 1.0
C1A A:HEC900 3.0 12.7 1.0
C1B A:HEC900 3.0 11.8 1.0
C4C A:HEC900 3.0 13.3 1.0
C1C A:HEC900 3.0 13.8 1.0
C4B A:HEC900 3.0 9.9 1.0
CA A:TYR1 3.2 14.1 1.0
CD2 A:HIS25 3.2 11.8 1.0
CHB A:HEC900 3.3 10.9 1.0
CHD A:HEC900 3.4 12.8 1.0
CHA A:HEC900 3.4 11.9 1.0
CHC A:HEC900 3.4 11.9 1.0
C A:TYR1 3.9 12.4 1.0
O A:TYR1 4.0 13.8 1.0
ND1 A:HIS25 4.2 11.4 1.0
C2D A:HEC900 4.2 13.1 1.0
C3D A:HEC900 4.2 13.0 1.0
C3A A:HEC900 4.3 11.2 1.0
C2A A:HEC900 4.3 12.5 1.0
CG A:HIS25 4.3 10.4 1.0
C2C A:HEC900 4.3 13.0 1.0
C3C A:HEC900 4.3 13.4 1.0
C2B A:HEC900 4.3 10.5 1.0
C3B A:HEC900 4.3 11.6 1.0
CB A:TYR1 4.5 12.9 1.0
CD2 A:PHE4 4.7 14.3 1.0
CG A:TYR1 4.7 12.9 1.0
NE2 A:GLN153 4.8 11.3 1.0
N A:PRO2 4.9 12.9 1.0

Iron binding site 2 out of 3 in 1e2v

Go back to Iron Binding Sites List in 1e2v
Iron binding site 2 out of 3 in the N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe900

b:11.8
occ:1.00
FE B:HEC900 0.0 11.8 1.0
NA B:HEC900 2.0 13.2 1.0
NC B:HEC900 2.0 12.1 1.0
ND B:HEC900 2.0 10.3 1.0
NB B:HEC900 2.0 12.2 1.0
N B:TYR301 2.1 11.7 1.0
NE2 B:HIS325 2.1 12.4 1.0
C4A B:HEC900 3.0 12.0 1.0
C1A B:HEC900 3.0 12.4 1.0
C4D B:HEC900 3.0 11.4 1.0
C4C B:HEC900 3.0 11.2 1.0
C1B B:HEC900 3.0 10.4 1.0
C1D B:HEC900 3.0 12.8 1.0
C1C B:HEC900 3.0 12.0 1.0
C4B B:HEC900 3.1 9.6 1.0
CE1 B:HIS325 3.1 10.0 1.0
CA B:TYR301 3.2 11.6 1.0
CD2 B:HIS325 3.2 10.6 1.0
CHB B:HEC900 3.4 10.8 1.0
CHA B:HEC900 3.4 11.0 1.0
CHD B:HEC900 3.4 13.7 1.0
CHC B:HEC900 3.4 11.8 1.0
C B:TYR301 3.9 11.7 1.0
O B:TYR301 4.0 10.4 1.0
ND1 B:HIS325 4.2 9.5 1.0
C3A B:HEC900 4.2 13.3 1.0
C3D B:HEC900 4.3 11.1 1.0
C2A B:HEC900 4.3 11.3 1.0
C2C B:HEC900 4.3 10.9 1.0
C3C B:HEC900 4.3 11.8 1.0
C2D B:HEC900 4.3 10.8 1.0
C2B B:HEC900 4.3 10.7 1.0
CG B:HIS325 4.3 9.2 1.0
C3B B:HEC900 4.3 10.7 1.0
CB B:TYR301 4.4 13.2 1.0
CD2 B:PHE304 4.7 11.7 1.0
CG B:TYR301 4.7 11.4 1.0
N B:PRO302 4.8 12.3 1.0
NE2 B:GLN453 4.8 15.0 1.0

Iron binding site 3 out of 3 in 1e2v

Go back to Iron Binding Sites List in 1e2v
Iron binding site 3 out of 3 in the N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of N153Q Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe900

b:14.2
occ:1.00
FE C:HEC900 0.0 14.2 1.0
ND C:HEC900 2.0 12.4 1.0
NA C:HEC900 2.0 13.2 1.0
NB C:HEC900 2.0 15.3 1.0
NC C:HEC900 2.0 13.9 1.0
NE2 C:HIS625 2.1 14.3 1.0
N C:TYR601 2.2 13.7 1.0
C1B C:HEC900 3.0 14.0 1.0
C4A C:HEC900 3.0 14.0 1.0
C4D C:HEC900 3.0 12.8 1.0
C1C C:HEC900 3.0 12.0 1.0
C1A C:HEC900 3.0 13.9 1.0
C1D C:HEC900 3.0 13.4 1.0
C4C C:HEC900 3.0 14.0 1.0
C4B C:HEC900 3.0 14.1 1.0
CE1 C:HIS625 3.0 15.5 1.0
CA C:TYR601 3.2 13.8 1.0
CD2 C:HIS625 3.2 15.3 1.0
CHB C:HEC900 3.3 14.4 1.0
CHA C:HEC900 3.4 13.2 1.0
CHC C:HEC900 3.4 15.8 1.0
CHD C:HEC900 3.4 12.6 1.0
C C:TYR601 3.8 14.8 1.0
O C:TYR601 3.9 13.4 1.0
ND1 C:HIS625 4.2 13.9 1.0
C2B C:HEC900 4.3 14.3 1.0
C3D C:HEC900 4.3 14.5 1.0
C3A C:HEC900 4.3 14.4 1.0
C2C C:HEC900 4.3 14.1 1.0
C2D C:HEC900 4.3 12.9 1.0
C2A C:HEC900 4.3 13.4 1.0
C3B C:HEC900 4.3 14.3 1.0
CG C:HIS625 4.3 16.0 1.0
C3C C:HEC900 4.3 13.6 1.0
CB C:TYR601 4.5 13.0 1.0
CD2 C:PHE604 4.7 15.6 1.0
CG C:TYR601 4.8 14.6 1.0
NE2 C:GLN753 4.8 12.9 1.0
N C:PRO602 4.8 15.1 1.0

Reference:

G.Sainz, C.J.Carrell, M.V.Ponamarev, G.M.Soriano, W.A.Cramer, J.L.Smith. Interruption of the Internal Water Chain of Cytochrome F Impairs Photosynthetic Function Biochemistry V. 39 9164 2000.
ISSN: ISSN 0006-2960
PubMed: 10924110
DOI: 10.1021/BI0004596
Page generated: Sun Dec 13 14:11:56 2020

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