Iron in PDB 1e2z: Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii
Protein crystallography data
The structure of Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1e2z
was solved by
G.Sainz,
C.J.Carrell,
M.V.Ponamarev,
G.M.Soriano,
W.A.Cramer,
J.L.Smith,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.16 /
2.5
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.950,
94.660,
122.640,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.8 /
27.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii
(pdb code 1e2z). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii, PDB code: 1e2z:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 1e2z
Go back to
Iron Binding Sites List in 1e2z
Iron binding site 1 out
of 3 in the Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe900
b:21.3
occ:1.00
|
FE
|
A:HEC900
|
0.0
|
21.3
|
1.0
|
NA
|
A:HEC900
|
1.9
|
18.7
|
1.0
|
NC
|
A:HEC900
|
1.9
|
16.5
|
1.0
|
ND
|
A:HEC900
|
2.0
|
20.3
|
1.0
|
NB
|
A:HEC900
|
2.0
|
13.6
|
1.0
|
N
|
A:TYR1
|
2.1
|
28.3
|
1.0
|
NE2
|
A:HIS25
|
2.2
|
22.4
|
1.0
|
C4A
|
A:HEC900
|
2.9
|
12.6
|
1.0
|
C1A
|
A:HEC900
|
3.0
|
17.0
|
1.0
|
C1C
|
A:HEC900
|
3.0
|
19.3
|
1.0
|
C1D
|
A:HEC900
|
3.0
|
18.6
|
1.0
|
C4C
|
A:HEC900
|
3.0
|
19.8
|
1.0
|
C1B
|
A:HEC900
|
3.0
|
14.0
|
1.0
|
C4D
|
A:HEC900
|
3.0
|
13.4
|
1.0
|
C4B
|
A:HEC900
|
3.0
|
19.3
|
1.0
|
CE1
|
A:HIS25
|
3.1
|
32.4
|
1.0
|
CD2
|
A:HIS25
|
3.2
|
31.1
|
1.0
|
CA
|
A:TYR1
|
3.3
|
35.9
|
1.0
|
CHB
|
A:HEC900
|
3.3
|
13.1
|
1.0
|
CHD
|
A:HEC900
|
3.4
|
18.2
|
1.0
|
CHA
|
A:HEC900
|
3.4
|
13.8
|
1.0
|
CHC
|
A:HEC900
|
3.4
|
17.4
|
1.0
|
C
|
A:TYR1
|
4.0
|
35.8
|
1.0
|
C3A
|
A:HEC900
|
4.2
|
8.9
|
1.0
|
O
|
A:TYR1
|
4.2
|
35.6
|
1.0
|
C2A
|
A:HEC900
|
4.2
|
12.9
|
1.0
|
ND1
|
A:HIS25
|
4.2
|
28.5
|
1.0
|
C2C
|
A:HEC900
|
4.2
|
19.4
|
1.0
|
C3C
|
A:HEC900
|
4.3
|
17.9
|
1.0
|
C3D
|
A:HEC900
|
4.3
|
17.4
|
1.0
|
C2D
|
A:HEC900
|
4.3
|
18.0
|
1.0
|
C2B
|
A:HEC900
|
4.3
|
12.0
|
1.0
|
C3B
|
A:HEC900
|
4.3
|
15.0
|
1.0
|
CG
|
A:HIS25
|
4.3
|
26.6
|
1.0
|
CB
|
A:TYR1
|
4.5
|
33.0
|
1.0
|
CD2
|
A:PHE4
|
4.8
|
39.1
|
1.0
|
CG
|
A:TYR1
|
4.8
|
29.3
|
1.0
|
N
|
A:PRO2
|
4.9
|
32.3
|
1.0
|
ND2
|
A:ASN153
|
5.0
|
19.7
|
1.0
|
|
Iron binding site 2 out
of 3 in 1e2z
Go back to
Iron Binding Sites List in 1e2z
Iron binding site 2 out
of 3 in the Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe900
b:17.5
occ:1.00
|
FE
|
B:HEC900
|
0.0
|
17.5
|
1.0
|
NB
|
B:HEC900
|
1.9
|
17.9
|
1.0
|
ND
|
B:HEC900
|
1.9
|
15.9
|
1.0
|
NC
|
B:HEC900
|
1.9
|
12.7
|
1.0
|
NA
|
B:HEC900
|
2.0
|
14.4
|
1.0
|
N
|
B:TYR1
|
2.1
|
26.0
|
1.0
|
NE2
|
B:HIS25
|
2.1
|
21.5
|
1.0
|
C1B
|
B:HEC900
|
3.0
|
13.4
|
1.0
|
C4B
|
B:HEC900
|
3.0
|
15.0
|
1.0
|
C1D
|
B:HEC900
|
3.0
|
14.0
|
1.0
|
C4C
|
B:HEC900
|
3.0
|
16.7
|
1.0
|
C4D
|
B:HEC900
|
3.0
|
14.8
|
1.0
|
C4A
|
B:HEC900
|
3.0
|
15.7
|
1.0
|
C1A
|
B:HEC900
|
3.0
|
15.2
|
1.0
|
CE1
|
B:HIS25
|
3.0
|
17.0
|
1.0
|
C1C
|
B:HEC900
|
3.0
|
12.9
|
1.0
|
CD2
|
B:HIS25
|
3.2
|
20.0
|
1.0
|
CA
|
B:TYR1
|
3.2
|
26.2
|
1.0
|
CHB
|
B:HEC900
|
3.3
|
12.7
|
1.0
|
CHD
|
B:HEC900
|
3.3
|
18.1
|
1.0
|
CHA
|
B:HEC900
|
3.4
|
13.9
|
1.0
|
CHC
|
B:HEC900
|
3.4
|
17.0
|
1.0
|
C
|
B:TYR1
|
3.9
|
33.3
|
1.0
|
O
|
B:TYR1
|
4.0
|
32.4
|
1.0
|
ND1
|
B:HIS25
|
4.2
|
21.5
|
1.0
|
C2B
|
B:HEC900
|
4.2
|
12.4
|
1.0
|
C3B
|
B:HEC900
|
4.2
|
14.7
|
1.0
|
C2D
|
B:HEC900
|
4.2
|
15.9
|
1.0
|
C3C
|
B:HEC900
|
4.2
|
17.0
|
1.0
|
C3D
|
B:HEC900
|
4.2
|
15.0
|
1.0
|
C2A
|
B:HEC900
|
4.3
|
8.4
|
1.0
|
C3A
|
B:HEC900
|
4.3
|
11.2
|
1.0
|
C2C
|
B:HEC900
|
4.3
|
16.1
|
1.0
|
CG
|
B:HIS25
|
4.3
|
19.6
|
1.0
|
CB
|
B:TYR1
|
4.5
|
25.6
|
1.0
|
CD2
|
B:PHE4
|
4.7
|
25.2
|
1.0
|
CG
|
B:TYR1
|
4.8
|
23.5
|
1.0
|
N
|
B:PRO2
|
4.8
|
34.2
|
1.0
|
ND2
|
B:ASN153
|
4.9
|
19.7
|
1.0
|
|
Iron binding site 3 out
of 3 in 1e2z
Go back to
Iron Binding Sites List in 1e2z
Iron binding site 3 out
of 3 in the Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Q158L Mutant of Cytochrome F From Chlamydomonas Reinhardtii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe900
b:20.7
occ:1.00
|
FE
|
C:HEC900
|
0.0
|
20.7
|
1.0
|
ND
|
C:HEC900
|
1.9
|
19.3
|
1.0
|
NB
|
C:HEC900
|
2.0
|
15.3
|
1.0
|
NC
|
C:HEC900
|
2.0
|
16.5
|
1.0
|
NA
|
C:HEC900
|
2.0
|
17.2
|
1.0
|
N
|
C:TYR1
|
2.1
|
30.2
|
1.0
|
NE2
|
C:HIS25
|
2.1
|
27.1
|
1.0
|
C1D
|
C:HEC900
|
2.9
|
20.1
|
1.0
|
C4D
|
C:HEC900
|
3.0
|
13.7
|
1.0
|
C4C
|
C:HEC900
|
3.0
|
19.8
|
1.0
|
C1B
|
C:HEC900
|
3.0
|
18.1
|
1.0
|
C4A
|
C:HEC900
|
3.0
|
14.3
|
1.0
|
CE1
|
C:HIS25
|
3.0
|
19.1
|
1.0
|
C1A
|
C:HEC900
|
3.0
|
14.9
|
1.0
|
C4B
|
C:HEC900
|
3.1
|
16.6
|
1.0
|
C1C
|
C:HEC900
|
3.1
|
18.6
|
1.0
|
CD2
|
C:HIS25
|
3.1
|
25.6
|
1.0
|
CA
|
C:TYR1
|
3.1
|
34.1
|
1.0
|
CHD
|
C:HEC900
|
3.3
|
16.3
|
1.0
|
CHB
|
C:HEC900
|
3.3
|
16.4
|
1.0
|
CHA
|
C:HEC900
|
3.4
|
15.6
|
1.0
|
CHC
|
C:HEC900
|
3.5
|
18.2
|
1.0
|
O
|
C:TYR1
|
3.6
|
42.0
|
1.0
|
C
|
C:TYR1
|
3.6
|
38.3
|
1.0
|
ND1
|
C:HIS25
|
4.2
|
28.1
|
1.0
|
C2D
|
C:HEC900
|
4.2
|
20.4
|
1.0
|
C3D
|
C:HEC900
|
4.2
|
17.2
|
1.0
|
CG
|
C:HIS25
|
4.2
|
24.2
|
1.0
|
C3C
|
C:HEC900
|
4.3
|
17.7
|
1.0
|
C2B
|
C:HEC900
|
4.3
|
20.0
|
1.0
|
C3B
|
C:HEC900
|
4.3
|
18.4
|
1.0
|
C2C
|
C:HEC900
|
4.3
|
19.3
|
1.0
|
C3A
|
C:HEC900
|
4.3
|
13.5
|
1.0
|
C2A
|
C:HEC900
|
4.3
|
15.1
|
1.0
|
CB
|
C:TYR1
|
4.4
|
32.4
|
1.0
|
N
|
C:PRO2
|
4.7
|
40.1
|
1.0
|
CD2
|
C:PHE4
|
4.8
|
29.3
|
1.0
|
CG
|
C:TYR1
|
4.8
|
40.4
|
1.0
|
|
Reference:
G.Sainz,
C.J.Carrell,
M.V.Ponamarev,
G.M.Soriano,
W.A.Cramer,
J.L.Smith.
Interruption of the Internal Water Chain of Cytochrome F Impairs Photosynthetic Function Biochemistry V. 39 9164 2000.
ISSN: ISSN 0006-2960
PubMed: 10924110
DOI: 10.1021/BI0004596
Page generated: Sat Aug 3 04:11:42 2024
|