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Iron in PDB 1e6d: Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R)

Protein crystallography data

The structure of Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R), PDB code: 1e6d was solved by J.P.Ridge, P.K.Fyfe, K.E.Mcauley, M.E.Van Brederode, B.Robert, R.Van Grondelle, N.W.Isaacs, R.J.Cogdell, M.R.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.4 / 2.3
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 141.200, 141.200, 187.300, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 20

Other elements in 1e6d:

The structure of Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R) also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R) (pdb code 1e6d). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R), PDB code: 1e6d:

Iron binding site 1 out of 1 in 1e6d

Go back to Iron Binding Sites List in 1e6d
Iron binding site 1 out of 1 in the Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic Reaction Center Mutant with Trp M115 Replaced with Phe (Chain M, WM115F) Phe M197 Replaced with Arg (Chain M, FM197R) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe1500

b:27.2
occ:1.00
OE2 M:GLU234 2.2 27.1 1.0
NE2 L:HIS190 2.2 30.5 1.0
NE2 M:HIS266 2.2 23.0 1.0
NE2 L:HIS230 2.3 28.8 1.0
OE1 M:GLU234 2.4 27.1 1.0
NE2 M:HIS219 2.4 30.6 1.0
CD M:GLU234 2.6 27.1 1.0
CE1 M:HIS266 3.0 24.6 1.0
CE1 L:HIS190 3.1 31.1 1.0
CE1 L:HIS230 3.2 27.9 1.0
CD2 L:HIS190 3.3 29.9 1.0
CD2 M:HIS219 3.3 30.3 1.0
CD2 M:HIS266 3.3 23.8 1.0
CD2 L:HIS230 3.4 27.8 1.0
CE1 M:HIS219 3.4 28.2 1.0
CG M:GLU234 4.1 28.6 1.0
ND1 M:HIS266 4.2 22.4 1.0
ND1 L:HIS190 4.3 30.2 1.0
ND1 L:HIS230 4.3 25.5 1.0
CG L:HIS190 4.4 29.5 1.0
CG M:HIS266 4.4 22.6 1.0
CG L:HIS230 4.5 28.2 1.0
ND1 M:HIS219 4.5 30.3 1.0
CG M:HIS219 4.5 31.8 1.0
CG1 M:ILE223 4.6 23.7 1.0
O M:HOH2048 4.6 27.4 1.0
CG2 L:VAL194 4.8 30.1 1.0
CB M:GLU234 4.9 25.5 1.0

Reference:

J.P.Ridge, P.K.Fyfe, K.E.Mcauley, M.E.Van Brederode, B.Robert, R.Van Grondelle, N.W.Isaacs, R.J.Cogdell, M.R.Jones. An Examination of How Structural Changes Can Affect the Rate of Electron Transfer in A Mutated Bacterial Photoreaction Centre Biochem.J. V. 351 567 2000.
ISSN: ISSN 0264-6021
PubMed: 11042110
DOI: 10.1042/0264-6021:3510567
Page generated: Sat Aug 3 04:15:13 2024

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