Iron in PDB 1e6e: Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
Enzymatic activity of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
All present enzymatic activity of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems:
1.18.1.2;
1.18.1.6;
Protein crystallography data
The structure of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems, PDB code: 1e6e
was solved by
J.J.Mueller,
A.Lapko,
G.Bourenkov,
K.Ruckpaul,
U.Heinemann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.97 /
2.30
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.210,
92.210,
607.850,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
22.2 /
26.8
|
Iron Binding Sites:
The binding sites of Iron atom in the Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
(pdb code 1e6e). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems, PDB code: 1e6e:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1e6e
Go back to
Iron Binding Sites List in 1e6e
Iron binding site 1 out
of 4 in the Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe129
b:27.1
occ:1.00
|
FE1
|
B:FES129
|
0.0
|
27.1
|
1.0
|
SG
|
B:CYS46
|
2.2
|
22.8
|
1.0
|
S1
|
B:FES129
|
2.2
|
26.2
|
1.0
|
S2
|
B:FES129
|
2.3
|
25.3
|
1.0
|
SG
|
B:CYS52
|
2.3
|
26.9
|
1.0
|
FE2
|
B:FES129
|
2.7
|
29.6
|
1.0
|
CB
|
B:CYS46
|
3.5
|
26.4
|
1.0
|
CB
|
B:CYS52
|
3.6
|
28.1
|
1.0
|
N
|
B:CYS52
|
3.7
|
30.9
|
1.0
|
N
|
B:CYS46
|
3.9
|
27.9
|
1.0
|
CA
|
B:CYS52
|
4.0
|
30.0
|
1.0
|
N
|
B:GLY48
|
4.0
|
28.8
|
1.0
|
C
|
B:CYS52
|
4.1
|
31.5
|
1.0
|
CA
|
B:CYS46
|
4.1
|
27.0
|
1.0
|
N
|
B:ALA51
|
4.2
|
33.1
|
1.0
|
O
|
B:CYS52
|
4.2
|
33.6
|
1.0
|
N
|
B:THR49
|
4.2
|
30.5
|
1.0
|
CA
|
B:GLY48
|
4.3
|
29.2
|
1.0
|
N
|
B:LEU50
|
4.4
|
31.5
|
1.0
|
C
|
B:CYS46
|
4.4
|
27.8
|
1.0
|
SG
|
B:CYS55
|
4.5
|
28.3
|
1.0
|
N
|
B:GLU47
|
4.5
|
27.5
|
1.0
|
SG
|
B:CYS92
|
4.6
|
29.3
|
1.0
|
N
|
B:SER53
|
4.7
|
30.8
|
1.0
|
C
|
B:ALA51
|
4.7
|
32.3
|
1.0
|
OG1
|
B:THR54
|
4.7
|
27.9
|
1.0
|
C
|
B:GLY48
|
4.8
|
30.3
|
1.0
|
N
|
B:ALA45
|
4.8
|
29.3
|
1.0
|
CA
|
B:LEU50
|
4.8
|
32.8
|
1.0
|
CA
|
B:ALA51
|
5.0
|
32.8
|
1.0
|
CA
|
B:GLY44
|
5.0
|
30.4
|
1.0
|
|
Iron binding site 2 out
of 4 in 1e6e
Go back to
Iron Binding Sites List in 1e6e
Iron binding site 2 out
of 4 in the Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe129
b:29.6
occ:1.00
|
FE2
|
B:FES129
|
0.0
|
29.6
|
1.0
|
S2
|
B:FES129
|
2.2
|
25.3
|
1.0
|
SG
|
B:CYS55
|
2.2
|
28.3
|
1.0
|
S1
|
B:FES129
|
2.2
|
26.2
|
1.0
|
SG
|
B:CYS92
|
2.3
|
29.3
|
1.0
|
FE1
|
B:FES129
|
2.7
|
27.1
|
1.0
|
CB
|
B:CYS55
|
3.3
|
27.9
|
1.0
|
CB
|
B:CYS92
|
3.4
|
31.7
|
1.0
|
CA
|
B:GLY48
|
3.9
|
29.2
|
1.0
|
N
|
B:CYS92
|
4.3
|
33.4
|
1.0
|
N
|
B:GLY48
|
4.3
|
28.8
|
1.0
|
SG
|
B:CYS46
|
4.4
|
22.8
|
1.0
|
CA
|
B:CYS92
|
4.4
|
33.4
|
1.0
|
SG
|
B:CYS52
|
4.5
|
26.9
|
1.0
|
CA
|
B:CYS55
|
4.5
|
28.5
|
1.0
|
N
|
B:CYS55
|
4.6
|
29.3
|
1.0
|
CB
|
B:LEU90
|
4.6
|
32.1
|
1.0
|
C
|
B:GLY48
|
4.7
|
30.3
|
1.0
|
N
|
B:THR49
|
4.8
|
30.5
|
1.0
|
N
|
B:LEU50
|
4.9
|
31.5
|
1.0
|
CD1
|
B:LEU90
|
4.9
|
31.9
|
1.0
|
CD2
|
B:LEU90
|
4.9
|
30.3
|
1.0
|
|
Iron binding site 3 out
of 4 in 1e6e
Go back to
Iron Binding Sites List in 1e6e
Iron binding site 3 out
of 4 in the Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe129
b:20.2
occ:1.00
|
FE1
|
D:FES129
|
0.0
|
20.2
|
1.0
|
SG
|
D:CYS46
|
2.2
|
17.6
|
1.0
|
S2
|
D:FES129
|
2.2
|
20.2
|
1.0
|
S1
|
D:FES129
|
2.3
|
22.6
|
1.0
|
SG
|
D:CYS52
|
2.3
|
20.4
|
1.0
|
FE2
|
D:FES129
|
2.8
|
22.8
|
1.0
|
CB
|
D:CYS46
|
3.4
|
21.2
|
1.0
|
CB
|
D:CYS52
|
3.6
|
20.6
|
1.0
|
N
|
D:CYS52
|
3.8
|
22.8
|
1.0
|
N
|
D:CYS46
|
3.8
|
22.4
|
1.0
|
N
|
D:GLY48
|
4.0
|
26.8
|
1.0
|
CA
|
D:CYS46
|
4.0
|
22.6
|
1.0
|
CA
|
D:CYS52
|
4.0
|
23.3
|
1.0
|
C
|
D:CYS52
|
4.2
|
25.6
|
1.0
|
N
|
D:ALA51
|
4.2
|
23.4
|
1.0
|
N
|
D:THR49
|
4.3
|
27.7
|
1.0
|
C
|
D:CYS46
|
4.3
|
24.1
|
1.0
|
N
|
D:LEU50
|
4.3
|
25.4
|
1.0
|
O
|
D:CYS52
|
4.4
|
27.8
|
1.0
|
N
|
D:GLU47
|
4.4
|
25.4
|
1.0
|
CA
|
D:GLY48
|
4.4
|
26.9
|
1.0
|
SG
|
D:CYS55
|
4.5
|
25.3
|
1.0
|
OG1
|
D:THR54
|
4.5
|
25.0
|
1.0
|
SG
|
D:CYS92
|
4.6
|
22.9
|
1.0
|
N
|
D:SER53
|
4.6
|
27.6
|
1.0
|
C
|
D:ALA51
|
4.7
|
22.5
|
1.0
|
CA
|
D:LEU50
|
4.7
|
24.2
|
1.0
|
N
|
D:ALA45
|
4.8
|
23.5
|
1.0
|
C
|
D:GLY48
|
4.8
|
28.0
|
1.0
|
O
|
D:CYS46
|
4.9
|
23.4
|
1.0
|
C
|
D:LEU50
|
5.0
|
23.8
|
1.0
|
C
|
D:GLY44
|
5.0
|
23.0
|
1.0
|
|
Iron binding site 4 out
of 4 in 1e6e
Go back to
Iron Binding Sites List in 1e6e
Iron binding site 4 out
of 4 in the Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Adrenodoxin Reductase/Adrenodoxin Complex of Mitochondrial P450 Systems within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe129
b:22.8
occ:1.00
|
FE2
|
D:FES129
|
0.0
|
22.8
|
1.0
|
S2
|
D:FES129
|
2.2
|
20.2
|
1.0
|
S1
|
D:FES129
|
2.2
|
22.6
|
1.0
|
SG
|
D:CYS55
|
2.2
|
25.3
|
1.0
|
SG
|
D:CYS92
|
2.3
|
22.9
|
1.0
|
FE1
|
D:FES129
|
2.8
|
20.2
|
1.0
|
CB
|
D:CYS92
|
3.3
|
22.4
|
1.0
|
CB
|
D:CYS55
|
3.3
|
24.9
|
1.0
|
CA
|
D:GLY48
|
4.0
|
26.9
|
1.0
|
N
|
D:CYS92
|
4.3
|
23.2
|
1.0
|
N
|
D:GLY48
|
4.3
|
26.8
|
1.0
|
SG
|
D:CYS52
|
4.3
|
20.4
|
1.0
|
CA
|
D:CYS92
|
4.4
|
23.5
|
1.0
|
N
|
D:CYS55
|
4.5
|
26.2
|
1.0
|
CA
|
D:CYS55
|
4.5
|
25.9
|
1.0
|
SG
|
D:CYS46
|
4.5
|
17.6
|
1.0
|
CB
|
D:LEU90
|
4.6
|
25.4
|
1.0
|
C
|
D:GLY48
|
4.7
|
28.0
|
1.0
|
N
|
D:THR49
|
4.8
|
27.7
|
1.0
|
N
|
D:LEU50
|
4.8
|
25.4
|
1.0
|
CD1
|
D:LEU90
|
5.0
|
21.4
|
1.0
|
|
Reference:
J.J.Mueller,
A.Lapko,
G.Bourenkov,
K.Ruckpaul,
U.Heinemann.
Adrenodoxin Reductase-Adrenodoxin Complex Structure Suggests Electron Transfer Path in Steroid Biosynthesis. J.Biol.Chem. V. 276 2786 2001.
ISSN: ISSN 0021-9258
PubMed: 11053423
DOI: 10.1074/JBC.M008501200
Page generated: Sat Aug 3 04:15:27 2024
|