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Iron in PDB 1eiq: 2,3-Dihydroxybiphenyl-1,2-Dioxygenase

Enzymatic activity of 2,3-Dihydroxybiphenyl-1,2-Dioxygenase

All present enzymatic activity of 2,3-Dihydroxybiphenyl-1,2-Dioxygenase:
1.13.11.39;

Protein crystallography data

The structure of 2,3-Dihydroxybiphenyl-1,2-Dioxygenase, PDB code: 1eiq was solved by T.Senda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.00 / 2.00
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 121.890, 121.890, 108.800, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.8

Iron Binding Sites:

The binding sites of Iron atom in the 2,3-Dihydroxybiphenyl-1,2-Dioxygenase (pdb code 1eiq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the 2,3-Dihydroxybiphenyl-1,2-Dioxygenase, PDB code: 1eiq:

Iron binding site 1 out of 1 in 1eiq

Go back to Iron Binding Sites List in 1eiq
Iron binding site 1 out of 1 in the 2,3-Dihydroxybiphenyl-1,2-Dioxygenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2,3-Dihydroxybiphenyl-1,2-Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:31.4
occ:1.00
OE1 A:GLU260 2.1 21.7 1.0
O A:HOH455 2.2 24.3 1.0
NE2 A:HIS145 2.3 21.1 1.0
NE2 A:HIS209 2.5 23.7 1.0
O A:HOH430 2.7 39.0 1.0
CE1 A:HIS145 3.1 15.9 1.0
CE1 A:HIS209 3.1 19.3 1.0
CD A:GLU260 3.2 16.1 1.0
CD2 A:HIS145 3.5 23.8 1.0
CD2 A:HIS209 3.7 22.9 1.0
OH A:TYR249 3.7 21.4 1.0
OE2 A:GLU260 3.7 17.5 1.0
NE2 A:HIS194 4.2 20.6 1.0
CB A:MET211 4.3 16.9 1.0
ND1 A:HIS145 4.3 22.0 1.0
ND1 A:HIS209 4.4 23.4 1.0
CG A:GLU260 4.5 16.2 1.0
CG A:HIS145 4.5 21.4 1.0
CB A:GLU260 4.6 12.3 1.0
CZ A:TYR249 4.6 18.6 1.0
CG A:MET211 4.6 17.0 1.0
CE1 A:HIS194 4.6 15.4 1.0
NE2 A:HIS240 4.6 19.9 1.0
CE1 A:TYR249 4.7 12.6 1.0
CG A:HIS209 4.7 24.7 1.0
CG2 A:VAL147 4.7 14.0 1.0
O A:HOH327 4.8 35.4 1.0

Reference:

Y.Uragami, T.Senda, K.Sugimoto, N.Sato, V.Nagarajan, E.Masai, M.Fukuda, Y.Mitsu. Crystal Structures of Substrate Free and Complex Forms of Reactivated Bphc, An Extradiol Type Ring-Cleavage Dioxygenase. J.Inorg.Biochem. V. 83 269 2001.
ISSN: ISSN 0162-0134
PubMed: 11293547
DOI: 10.1016/S0162-0134(00)00172-0
Page generated: Sat Aug 3 04:34:21 2024

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