Atomistry » Iron » PDB 1etp-1faw » 1eyt
Atomistry »
  Iron »
    PDB 1etp-1faw »
      1eyt »

Iron in PDB 1eyt: Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum

Protein crystallography data

The structure of Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum, PDB code: 1eyt was solved by T.Nogi, I.Fathir, M.Kobayashi, T.Nozawa, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.118, 59.592, 23.620, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 23.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum (pdb code 1eyt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum, PDB code: 1eyt:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1eyt

Go back to Iron Binding Sites List in 1eyt
Iron binding site 1 out of 4 in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:2.0
occ:1.00
 FE1 A:SF484 0.0 2.0 1.0
SG A:CYS43 2.2 2.0 1.0
S2 A:SF484 2.3 6.1 1.0
S3 A:SF484 2.3 8.8 1.0
S4 A:SF484 2.3 5.8 1.0
FE4 A:SF484 2.7 2.0 1.0
FE3 A:SF484 2.8 2.0 1.0
FE2 A:SF484 2.8 2.0 1.0
CB A:CYS43 3.3 2.0 1.0
CA A:CYS43 3.6 4.3 1.0
S1 A:SF484 4.0 13.2 1.0
N A:CYS43 4.3 2.0 1.0
CD1 A:ILE69 4.5 4.7 1.0
CA A:TRP74 4.6 2.0 1.0
N A:CYS75 4.7 2.0 1.0
CB A:CYS46 4.7 2.0 1.0
C A:TRP74 4.8 3.6 1.0
SG A:CYS46 4.8 2.0 1.0
CG1 A:ILE69 4.8 3.9 1.0
N A:TRP74 4.8 2.0 1.0
C A:CYS43 4.8 2.0 1.0
SG A:CYS75 4.8 3.8 1.0
SG A:CYS61 4.9 8.8 1.0
CE1 A:TYR19 4.9 4.8 1.0
CB A:CYS75 4.9 2.0 1.0
O A:CYS43 5.0 2.6 1.0

Iron binding site 2 out of 4 in 1eyt

Go back to Iron Binding Sites List in 1eyt
Iron binding site 2 out of 4 in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:2.0
occ:1.00
 FE2 A:SF484 0.0 2.0 1.0
SG A:CYS46 2.2 2.0 1.0
S1 A:SF484 2.3 13.2 1.0
S3 A:SF484 2.3 8.8 1.0
S4 A:SF484 2.3 5.8 1.0
FE4 A:SF484 2.7 2.0 1.0
FE3 A:SF484 2.8 2.0 1.0
FE1 A:SF484 2.8 2.0 1.0
CB A:CYS46 3.0 2.0 1.0
S2 A:SF484 3.9 6.1 1.0
CA A:TRP78 4.2 2.6 1.0
CB A:PHE48 4.2 2.7 1.0
CA A:CYS46 4.5 2.6 1.0
CD2 A:PHE48 4.6 3.7 1.0
SG A:CYS61 4.6 8.8 1.0
N A:TRP78 4.7 4.0 1.0
CD1 A:TRP78 4.7 2.8 1.0
CA A:CYS43 4.7 4.3 1.0
N A:PHE48 4.7 3.5 1.0
SG A:CYS75 4.8 3.8 1.0
SG A:CYS43 4.8 2.0 1.0
N A:MET49 4.9 5.2 1.0
CA A:PHE48 4.9 2.0 1.0
O A:SER77 4.9 2.0 1.0
CB A:TRP78 4.9 2.0 1.0
C A:SER77 4.9 2.3 1.0
C A:CYS46 5.0 2.9 1.0
N A:THR79 5.0 2.5 1.0
CG A:PHE48 5.0 3.5 1.0

Iron binding site 3 out of 4 in 1eyt

Go back to Iron Binding Sites List in 1eyt
Iron binding site 3 out of 4 in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:2.0
occ:1.00
 FE3 A:SF484 0.0 2.0 1.0
SG A:CYS61 2.2 8.8 1.0
S4 A:SF484 2.3 5.8 1.0
S1 A:SF484 2.4 13.2 1.0
S2 A:SF484 2.4 6.1 1.0
FE4 A:SF484 2.7 2.0 1.0
FE2 A:SF484 2.8 2.0 1.0
FE1 A:SF484 2.8 2.0 1.0
CB A:CYS61 3.3 2.9 1.0
S3 A:SF484 3.9 8.8 1.0
CA A:CYS61 4.4 2.3 1.0
CB A:PHE48 4.4 2.7 1.0
SG A:CYS75 4.6 3.8 1.0
CE2 A:PHE64 4.6 2.0 1.0
CD2 A:PHE64 4.7 2.0 1.0
SG A:CYS46 4.7 2.0 1.0
SG A:CYS43 4.7 2.0 1.0
CG A:LEU63 4.8 6.9 1.0
CG1 A:ILE69 4.8 3.9 1.0
C A:PHE48 4.9 3.6 1.0
CG2 A:ILE69 4.9 4.4 1.0
CD1 A:LEU63 4.9 4.7 1.0

Iron binding site 4 out of 4 in 1eyt

Go back to Iron Binding Sites List in 1eyt
Iron binding site 4 out of 4 in the Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:2.0
occ:1.00
 FE4 A:SF484 0.0 2.0 1.0
SG A:CYS75 2.3 3.8 1.0
S2 A:SF484 2.3 6.1 1.0
S1 A:SF484 2.3 13.2 1.0
S3 A:SF484 2.3 8.8 1.0
FE1 A:SF484 2.7 2.0 1.0
FE3 A:SF484 2.7 2.0 1.0
FE2 A:SF484 2.7 2.0 1.0
CB A:CYS75 3.1 2.0 1.0
N A:CYS75 3.8 2.0 1.0
CA A:CYS75 3.9 2.8 1.0
S4 A:SF484 3.9 5.8 1.0
O A:CYS75 4.2 2.0 1.0
C A:CYS75 4.3 2.6 1.0
N A:TRP78 4.4 4.0 1.0
C A:TRP74 4.6 3.6 1.0
CB A:SER77 4.6 6.9 1.0
SG A:CYS61 4.7 8.8 1.0
C A:SER77 4.7 2.3 1.0
SG A:CYS43 4.7 2.0 1.0
CA A:TRP78 4.8 2.6 1.0
SG A:CYS46 4.8 2.0 1.0
N A:SER77 4.8 2.2 1.0
CA A:SER77 5.0 4.3 1.0

Reference:

T.Nogi, I.Fathir, M.Kobayashi, T.Nozawa, K.Miki. Crystal Structures of Photosynthetic Reaction Center and High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum: Thermostability and Electron Transfer. Proc.Natl.Acad.Sci.Usa V. 97 13561 2000.
ISSN: ISSN 0027-8424
PubMed: 11095707
DOI: 10.1073/PNAS.240224997
Page generated: Sun Dec 13 14:13:00 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy