Atomistry » Iron » PDB 1etp-1faw » 1f5o
Atomistry »
  Iron »
    PDB 1etp-1faw »
      1f5o »

Iron in PDB 1f5o: 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)

Protein crystallography data

The structure of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1), PDB code: 1f5o was solved by H.A.Heaslet, W.E.Royer Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.500, 96.200, 146.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.4

Iron Binding Sites:

The binding sites of Iron atom in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) (pdb code 1f5o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1), PDB code: 1f5o:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 1 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe150

b:52.5
occ:1.00
FE A:HEM150 0.0 52.5 1.0
NA A:HEM150 2.0 52.5 1.0
ND A:HEM150 2.0 52.5 1.0
NC A:HEM150 2.0 52.5 1.0
NB A:HEM150 2.0 52.5 1.0
NE2 A:HIS105 2.0 33.8 1.0
CE1 A:HIS105 2.9 33.8 1.0
C1A A:HEM150 3.0 52.5 1.0
C1D A:HEM150 3.0 52.5 1.0
C4A A:HEM150 3.0 52.5 1.0
C4C A:HEM150 3.1 52.5 1.0
C4D A:HEM150 3.1 52.5 1.0
C1C A:HEM150 3.1 52.5 1.0
C4B A:HEM150 3.1 52.5 1.0
C1B A:HEM150 3.1 52.5 1.0
CD2 A:HIS105 3.2 33.8 1.0
CHD A:HEM150 3.4 52.5 1.0
CHA A:HEM150 3.4 52.5 1.0
CHB A:HEM150 3.5 52.5 1.0
CHC A:HEM150 3.5 52.5 1.0
ND1 A:HIS105 4.1 33.8 1.0
NE2 A:HIS73 4.2 49.5 1.0
CG A:HIS105 4.3 33.8 1.0
C2D A:HEM150 4.3 52.5 1.0
C2A A:HEM150 4.3 52.5 1.0
C3D A:HEM150 4.3 52.5 1.0
C3A A:HEM150 4.3 52.5 1.0
C2C A:HEM150 4.3 52.5 1.0
C3C A:HEM150 4.3 52.5 1.0
C3B A:HEM150 4.3 52.5 1.0
C2B A:HEM150 4.4 52.5 1.0
CG1 A:ILE77 4.4 37.4 1.0
CD1 A:ILE77 4.4 37.4 1.0

Iron binding site 2 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 2 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe150

b:38.0
occ:1.00
FE B:HEM150 0.0 38.0 1.0
ND B:HEM150 2.0 38.0 1.0
NA B:HEM150 2.0 38.0 1.0
NC B:HEM150 2.0 38.0 1.0
NB B:HEM150 2.0 38.0 1.0
NE2 B:HIS105 2.1 39.2 1.0
CE1 B:HIS105 2.9 39.2 1.0
C1A B:HEM150 3.0 38.0 1.0
C1D B:HEM150 3.0 38.0 1.0
C4D B:HEM150 3.0 38.0 1.0
C4C B:HEM150 3.0 38.0 1.0
C4A B:HEM150 3.1 38.0 1.0
C1C B:HEM150 3.1 38.0 1.0
C4B B:HEM150 3.1 38.0 1.0
C1B B:HEM150 3.1 38.0 1.0
CD2 B:HIS105 3.2 39.2 1.0
CHD B:HEM150 3.4 38.0 1.0
CHA B:HEM150 3.4 38.0 1.0
CHC B:HEM150 3.5 38.0 1.0
CHB B:HEM150 3.5 38.0 1.0
ND1 B:HIS105 4.1 39.2 1.0
NE2 B:HIS73 4.2 39.3 1.0
C2A B:HEM150 4.2 38.0 1.0
C2D B:HEM150 4.3 38.0 1.0
C3D B:HEM150 4.3 38.0 1.0
CG B:HIS105 4.3 39.2 1.0
C3A B:HEM150 4.3 38.0 1.0
C2C B:HEM150 4.3 38.0 1.0
C3C B:HEM150 4.3 38.0 1.0
C3B B:HEM150 4.4 38.0 1.0
C2B B:HEM150 4.4 38.0 1.0
CG1 B:ILE77 4.4 26.0 1.0
CD1 B:ILE77 4.4 26.0 1.0

Iron binding site 3 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 3 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe150

b:42.8
occ:1.00
FE C:HEM150 0.0 42.8 1.0
ND C:HEM150 2.0 42.8 1.0
NC C:HEM150 2.0 42.8 1.0
NA C:HEM150 2.0 42.8 1.0
NB C:HEM150 2.0 42.8 1.0
NE2 C:HIS105 2.1 57.2 1.0
CE1 C:HIS105 3.0 57.2 1.0
C1D C:HEM150 3.0 42.8 1.0
C4D C:HEM150 3.0 42.8 1.0
C4C C:HEM150 3.0 42.8 1.0
C1A C:HEM150 3.0 42.8 1.0
C1C C:HEM150 3.1 42.8 1.0
C4A C:HEM150 3.1 42.8 1.0
C4B C:HEM150 3.1 42.8 1.0
C1B C:HEM150 3.1 42.8 1.0
CD2 C:HIS105 3.2 57.2 1.0
CHD C:HEM150 3.4 42.8 1.0
CHA C:HEM150 3.4 42.8 1.0
CHC C:HEM150 3.5 42.8 1.0
CHB C:HEM150 3.5 42.8 1.0
ND1 C:HIS105 4.2 57.2 1.0
NE2 C:HIS73 4.2 54.7 1.0
C2D C:HEM150 4.3 42.8 1.0
C3D C:HEM150 4.3 42.8 1.0
C2A C:HEM150 4.3 42.8 1.0
CG C:HIS105 4.3 57.2 1.0
C2C C:HEM150 4.3 42.8 1.0
C3C C:HEM150 4.3 42.8 1.0
C3A C:HEM150 4.3 42.8 1.0
C3B C:HEM150 4.3 42.8 1.0
C2B C:HEM150 4.3 42.8 1.0
CG1 C:ILE77 4.4 33.7 1.0
CD1 C:ILE77 4.4 33.7 1.0

Iron binding site 4 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 4 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe150

b:38.2
occ:1.00
FE D:HEM150 0.0 38.2 1.0
ND D:HEM150 2.0 38.2 1.0
NA D:HEM150 2.0 38.2 1.0
NC D:HEM150 2.0 38.2 1.0
NE2 D:HIS105 2.0 53.6 1.0
NB D:HEM150 2.1 38.2 1.0
CE1 D:HIS105 2.9 53.6 1.0
C1D D:HEM150 3.0 38.2 1.0
C4D D:HEM150 3.0 38.2 1.0
C1A D:HEM150 3.0 38.2 1.0
C4A D:HEM150 3.0 38.2 1.0
C4C D:HEM150 3.1 38.2 1.0
C1C D:HEM150 3.1 38.2 1.0
C1B D:HEM150 3.1 38.2 1.0
C4B D:HEM150 3.1 38.2 1.0
CD2 D:HIS105 3.2 53.6 1.0
CHA D:HEM150 3.4 38.2 1.0
CHD D:HEM150 3.4 38.2 1.0
CHB D:HEM150 3.5 38.2 1.0
CHC D:HEM150 3.5 38.2 1.0
ND1 D:HIS105 4.1 53.6 1.0
NE2 D:HIS73 4.2 55.0 1.0
C3D D:HEM150 4.2 38.2 1.0
C2A D:HEM150 4.2 38.2 1.0
C2D D:HEM150 4.2 38.2 1.0
CG D:HIS105 4.3 53.6 1.0
C3A D:HEM150 4.3 38.2 1.0
C2C D:HEM150 4.3 38.2 1.0
C3C D:HEM150 4.3 38.2 1.0
C3B D:HEM150 4.4 38.2 1.0
C2B D:HEM150 4.4 38.2 1.0
CG1 D:ILE77 4.4 30.2 1.0
CD1 D:ILE77 4.4 30.2 1.0

Iron binding site 5 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 5 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe150

b:41.0
occ:1.00
FE E:HEM150 0.0 41.0 1.0
NC E:HEM150 2.0 41.0 1.0
ND E:HEM150 2.0 41.0 1.0
NA E:HEM150 2.0 41.0 1.0
NB E:HEM150 2.0 41.0 1.0
NE2 E:HIS105 2.1 33.8 1.0
CE1 E:HIS105 3.0 33.8 1.0
C1D E:HEM150 3.0 41.0 1.0
C4C E:HEM150 3.0 41.0 1.0
C4D E:HEM150 3.1 41.0 1.0
C1C E:HEM150 3.1 41.0 1.0
C1A E:HEM150 3.1 41.0 1.0
C4B E:HEM150 3.1 41.0 1.0
C4A E:HEM150 3.1 41.0 1.0
C1B E:HEM150 3.1 41.0 1.0
CD2 E:HIS105 3.2 33.8 1.0
CHD E:HEM150 3.4 41.0 1.0
CHC E:HEM150 3.4 41.0 1.0
CHA E:HEM150 3.4 41.0 1.0
CHB E:HEM150 3.5 41.0 1.0
ND1 E:HIS105 4.1 33.8 1.0
NE2 E:HIS73 4.2 58.3 1.0
C2D E:HEM150 4.3 41.0 1.0
C3D E:HEM150 4.3 41.0 1.0
CG E:HIS105 4.3 33.8 1.0
C2C E:HEM150 4.3 41.0 1.0
C2A E:HEM150 4.3 41.0 1.0
C3C E:HEM150 4.3 41.0 1.0
C3A E:HEM150 4.3 41.0 1.0
C3B E:HEM150 4.3 41.0 1.0
C2B E:HEM150 4.3 41.0 1.0
CD1 E:ILE77 4.4 36.2 1.0
CG1 E:ILE77 4.4 36.2 1.0

Iron binding site 6 out of 6 in 1f5o

Go back to Iron Binding Sites List in 1f5o
Iron binding site 6 out of 6 in the 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of 2.9 Angstrom Crystal Structure of Deoxygenated Lamprey Hemoglobin V in the Space Group P2(1)2(1)2(1) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe150

b:42.2
occ:1.00
FE F:HEM150 0.0 42.2 1.0
NA F:HEM150 1.9 42.2 1.0
ND F:HEM150 2.0 42.2 1.0
NB F:HEM150 2.0 42.2 1.0
NC F:HEM150 2.0 42.2 1.0
NE2 F:HIS105 2.1 41.0 1.0
CE1 F:HIS105 2.9 41.0 1.0
C1A F:HEM150 3.0 42.2 1.0
C4A F:HEM150 3.0 42.2 1.0
C4D F:HEM150 3.0 42.2 1.0
C1D F:HEM150 3.1 42.2 1.0
C1B F:HEM150 3.1 42.2 1.0
C4B F:HEM150 3.1 42.2 1.0
C4C F:HEM150 3.1 42.2 1.0
C1C F:HEM150 3.1 42.2 1.0
CD2 F:HIS105 3.2 41.0 1.0
CHA F:HEM150 3.4 42.2 1.0
CHB F:HEM150 3.4 42.2 1.0
CHD F:HEM150 3.5 42.2 1.0
CHC F:HEM150 3.5 42.2 1.0
ND1 F:HIS105 4.2 41.0 1.0
NE2 F:HIS73 4.2 54.6 1.0
C2A F:HEM150 4.2 42.2 1.0
C3A F:HEM150 4.3 42.2 1.0
C3D F:HEM150 4.3 42.2 1.0
C2D F:HEM150 4.3 42.2 1.0
CG F:HIS105 4.3 41.0 1.0
C3B F:HEM150 4.3 42.2 1.0
C2B F:HEM150 4.3 42.2 1.0
C2C F:HEM150 4.3 42.2 1.0
C3C F:HEM150 4.4 42.2 1.0
CG1 F:ILE77 4.4 39.1 1.0
CD1 F:ILE77 4.4 39.1 1.0

Reference:

H.A.Heaslet, W.E.Royer Jr.. Crystalline Ligand Transitions in Lamprey Hemoglobin. Structural Evidence For the Regulation of Oxygen Affinity. J.Biol.Chem. V. 276 26230 2001.
ISSN: ISSN 0021-9258
PubMed: 11340069
DOI: 10.1074/JBC.M101391200
Page generated: Sat Aug 3 04:44:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy