Iron in PDB 1fca: Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution

The structure of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution, PDB code: 1fca was solved by D.Tranqui, J.C.Jesior, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	5.00 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	34.441, 34.441, 74.778, 90.00, 90.00, 90.00
R / Rfree (%)	14.3 / n/a

The binding sites of Iron atom in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution (pdb code 1fca). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution, PDB code: 1fca:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:7.8 occ:1.00 FE1 A:SF456 0.0 7.8 1.0 S4 A:SF456 2.3 7.5 1.0 SG A:CYS8 2.3 5.6 1.0 S3 A:SF456 2.3 6.9 1.0 S2 A:SF456 2.3 5.3 1.0 FE3 A:SF456 2.7 7.3 1.0 FE4 A:SF456 2.7 7.4 1.0 FE2 A:SF456 2.8 8.1 1.0 H A:SER10 3.2 25.2 1.0 CB A:CYS8 3.4 6.3 1.0 H A:ILE9 3.5 23.3 1.0 CA A:CYS8 3.8 7.2 1.0 H A:CYS11 3.9 4.7 1.0 S1 A:SF456 3.9 6.4 1.0 N A:SER10 4.0 9.3 1.0 N A:ILE9 4.1 8.1 1.0 H A:TYR30 4.2 15.4 1.0 C A:CYS8 4.3 8.4 1.0 H A:GLY12 4.3 7.6 1.0 CA A:SER10 4.4 10.3 1.0 CG2 A:ILE4 4.6 5.7 1.0 CB A:TYR30 4.6 8.6 1.0 N A:CYS11 4.6 10.4 1.0 SG A:CYS47 4.7 5.3 1.0 CD1 A:TYR30 4.7 9.7 1.0 CG A:TYR30 4.8 9.4 1.0 SG A:CYS14 4.8 8.5 1.0 CB A:ALA51 4.9 6.0 1.0 C A:ILE9 5.0 9.3 1.0

Iron binding site 2 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:8.1 occ:1.00 FE2 A:SF456 0.0 8.1 1.0 S3 A:SF456 2.3 6.9 1.0 S4 A:SF456 2.3 7.5 1.0 SG A:CYS11 2.3 7.2 1.0 S1 A:SF456 2.3 6.4 1.0 FE4 A:SF456 2.7 7.4 1.0 FE3 A:SF456 2.8 7.3 1.0 FE1 A:SF456 2.8 7.8 1.0 H A:CYS11 2.8 4.7 1.0 H A:GLY12 3.0 7.6 1.0 H A:ALA13 3.3 11.9 1.0 CB A:CYS11 3.5 8.9 1.0 N A:CYS11 3.5 10.4 1.0 N A:GLY12 3.7 10.3 1.0 CA A:CYS11 3.9 10.6 1.0 H A:CYS14 4.0 9.0 1.0 S2 A:SF456 4.0 5.3 1.0 N A:ALA13 4.1 7.5 1.0 C A:CYS11 4.2 11.0 1.0 H A:SER10 4.3 25.2 1.0 H A:ILE9 4.3 23.3 1.0 CD A:PRO48 4.5 6.9 1.0 C A:SER10 4.5 10.8 1.0 N A:SER10 4.6 9.3 1.0 SG A:CYS47 4.6 5.3 1.0 CA A:GLY12 4.6 9.8 1.0 SG A:CYS14 4.7 8.5 1.0 CA A:SER10 4.7 10.3 1.0 C A:GLY12 4.8 8.7 1.0 SG A:CYS8 4.8 5.6 1.0 CG1 A:ILE9 4.8 9.5 1.0 N A:CYS14 4.9 7.8 1.0 CB A:ALA13 4.9 8.7 1.0 CG A:PRO48 5.0 7.5 1.0

Iron binding site 3 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:7.3 occ:1.00 FE3 A:SF456 0.0 7.3 1.0 S2 A:SF456 2.3 5.3 1.0 SG A:CYS14 2.3 8.5 1.0 S1 A:SF456 2.3 6.4 1.0 S4 A:SF456 2.4 7.5 1.0 FE4 A:SF456 2.6 7.4 1.0 FE1 A:SF456 2.7 7.8 1.0 FE2 A:SF456 2.8 8.1 1.0 H A:CYS14 3.1 9.0 1.0 CB A:CYS14 3.3 8.1 1.0 S3 A:SF456 3.9 6.9 1.0 N A:CYS14 4.0 7.8 1.0 H A:GLY12 4.2 7.6 1.0 CA A:CYS14 4.2 8.0 1.0 H A:ALA13 4.5 11.9 1.0 CB A:TYR30 4.7 8.6 1.0 SG A:CYS8 4.8 5.6 1.0 H A:GLU15 4.8 15.0 1.0 CG A:TYR30 4.8 9.4 1.0 N A:ALA13 4.8 7.5 1.0 SG A:CYS11 4.8 7.2 1.0 SG A:CYS47 4.8 5.3 1.0 CD1 A:ILE4 4.9 7.3 1.0 N A:GLY12 4.9 10.3 1.0

Iron binding site 4 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe56 b:7.4 occ:1.00 FE4 A:SF456 0.0 7.4 1.0 SG A:CYS47 2.3 5.3 1.0 S1 A:SF456 2.3 6.4 1.0 S2 A:SF456 2.3 5.3 1.0 S3 A:SF456 2.3 6.9 1.0 FE3 A:SF456 2.6 7.3 1.0 FE1 A:SF456 2.7 7.8 1.0 FE2 A:SF456 2.7 8.1 1.0 CB A:CYS47 3.2 5.6 1.0 CA A:CYS47 3.8 6.8 1.0 S4 A:SF456 3.9 7.5 1.0 H A:ALA51 4.0 18.7 1.0 CD A:PRO48 4.3 6.9 1.0 H A:VAL49 4.4 8.6 1.0 CD A:PRO52 4.4 6.1 1.0 CG2 A:VAL49 4.5 10.9 1.0 CB A:ALA51 4.5 6.0 1.0 C A:CYS47 4.6 6.0 1.0 H A:ILE9 4.6 23.3 1.0 SG A:CYS11 4.7 7.2 1.0 SG A:CYS14 4.7 8.5 1.0 CG A:PRO52 4.8 6.1 1.0 N A:PRO48 4.8 6.5 1.0 N A:ALA51 4.8 7.3 1.0 H A:CYS14 4.9 9.0 1.0 SG A:CYS8 4.9 5.6 1.0 N A:CYS47 4.9 7.1 1.0

Iron binding site 5 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:7.6 occ:1.00 FE1 A:SF457 0.0 7.6 1.0 SG A:CYS18 2.3 6.8 1.0 S2 A:SF457 2.3 6.8 1.0 S3 A:SF457 2.3 5.0 1.0 S4 A:SF457 2.3 6.2 1.0 FE2 A:SF457 2.7 7.4 1.0 FE4 A:SF457 2.7 7.6 1.0 FE3 A:SF457 2.7 8.1 1.0 CB A:CYS18 3.3 8.8 1.0 CA A:CYS18 3.9 8.8 1.0 S1 A:SF457 3.9 7.2 1.0 H A:ALA22 4.1 13.9 1.0 H A:VAL20 4.2 13.0 1.0 CB A:ALA22 4.3 9.1 1.0 CD A:PRO19 4.3 9.1 1.0 CG2 A:VAL20 4.5 9.9 1.0 CD1 A:ILE23 4.6 6.3 1.0 C A:CYS18 4.6 8.2 1.0 SG A:CYS40 4.6 8.4 1.0 CG1 A:ILE23 4.6 7.4 1.0 H A:ILE38 4.7 20.1 1.0 N A:PRO19 4.7 9.0 1.0 H A:CYS43 4.7 17.7 1.0 SG A:CYS37 4.9 6.4 1.0 SG A:CYS43 4.9 7.0 1.0 N A:ALA22 4.9 9.6 1.0

Iron binding site 6 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:7.4 occ:1.00 FE2 A:SF457 0.0 7.4 1.0 S4 A:SF457 2.3 6.2 1.0 S1 A:SF457 2.3 7.2 1.0 SG A:CYS37 2.3 6.4 1.0 S3 A:SF457 2.3 5.0 1.0 FE1 A:SF457 2.7 7.6 1.0 FE4 A:SF457 2.7 7.6 1.0 FE3 A:SF457 2.7 8.1 1.0 CB A:CYS37 3.3 7.4 1.0 H A:ASP39 3.4 10.9 1.0 H A:ILE38 3.4 20.1 1.0 CA A:CYS37 3.7 8.4 1.0 S2 A:SF457 3.9 6.8 1.0 H A:CYS40 3.9 20.7 1.0 N A:ILE38 4.0 8.3 1.0 H A:TYR2 4.1 15.2 1.0 N A:ASP39 4.1 9.6 1.0 C A:CYS37 4.3 9.2 1.0 H A:GLY41 4.5 18.0 1.0 CA A:ASP39 4.7 10.0 1.0 CB A:TYR2 4.7 7.7 1.0 N A:CYS40 4.7 8.8 1.0 CG2 A:ILE32 4.7 4.7 1.0 SG A:CYS18 4.8 6.8 1.0 SG A:CYS43 4.8 7.0 1.0 CD1 A:TYR2 4.9 7.3 1.0 CB A:ALA22 5.0 9.1 1.0 SG A:CYS40 5.0 8.4 1.0 CG A:TYR2 5.0 8.1 1.0

Iron binding site 7 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:8.1 occ:1.00 FE3 A:SF457 0.0 8.1 1.0 S1 A:SF457 2.3 7.2 1.0 S4 A:SF457 2.3 6.2 1.0 SG A:CYS40 2.3 8.4 1.0 S2 A:SF457 2.3 6.8 1.0 FE1 A:SF457 2.7 7.6 1.0 FE2 A:SF457 2.7 7.4 1.0 FE4 A:SF457 2.8 7.6 1.0 H A:CYS40 2.8 20.7 1.0 H A:GLY41 3.1 18.0 1.0 H A:ALA42 3.3 9.4 1.0 CB A:CYS40 3.5 8.4 1.0 N A:CYS40 3.5 8.8 1.0 N A:GLY41 3.7 8.3 1.0 CA A:CYS40 3.9 9.0 1.0 H A:CYS43 3.9 17.7 1.0 S3 A:SF457 4.0 5.0 1.0 N A:ALA42 4.1 8.4 1.0 C A:CYS40 4.2 10.0 1.0 H A:ILE38 4.3 20.1 1.0 CD A:PRO19 4.3 9.1 1.0 H A:ASP39 4.4 10.9 1.0 CD1 A:ILE38 4.5 11.9 1.0 C A:ASP39 4.5 9.7 1.0 CB A:ALA42 4.6 9.4 1.0 SG A:CYS43 4.6 7.0 1.0 N A:ASP39 4.6 9.6 1.0 SG A:CYS18 4.7 6.8 1.0 CA A:GLY41 4.7 8.6 1.0 SG A:CYS37 4.7 6.4 1.0 CG A:PRO19 4.8 10.0 1.0 C A:GLY41 4.8 8.4 1.0 N A:CYS43 4.9 6.5 1.0 CA A:ASP39 4.9 10.0 1.0 CA A:ALA42 4.9 8.7 1.0

Iron binding site 8 out of 8 in the Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe57 b:7.6 occ:1.00 FE4 A:SF457 0.0 7.6 1.0 SG A:CYS43 2.3 7.0 1.0 S2 A:SF457 2.3 6.8 1.0 S3 A:SF457 2.3 5.0 1.0 S1 A:SF457 2.3 7.2 1.0 FE2 A:SF457 2.7 7.4 1.0 FE1 A:SF457 2.7 7.6 1.0 FE3 A:SF457 2.8 8.1 1.0 H A:CYS43 3.0 17.7 1.0 CB A:CYS43 3.3 6.6 1.0 N A:CYS43 3.9 6.5 1.0 S4 A:SF457 3.9 6.2 1.0 CA A:CYS43 4.2 6.1 1.0 H A:GLY41 4.2 18.0 1.0 CD1 A:ILE23 4.3 6.3 1.0 H A:ALA42 4.4 9.4 1.0 CD1 A:ILE32 4.6 5.5 1.0 H A:ALA44 4.7 13.2 1.0 SG A:CYS37 4.7 6.4 1.0 N A:ALA42 4.7 8.4 1.0 SG A:CYS40 4.7 8.4 1.0 CB A:TYR2 4.8 7.7 1.0 SG A:CYS18 4.8 6.8 1.0 N A:GLY41 4.9 8.3 1.0 CG A:TYR2 4.9 8.1 1.0 CG1 A:ILE23 4.9 7.4 1.0

D.Tranqui, J.C.Jesior. Structure of the Ferredoxin From Clostridium Acidurici: Model at 1.8 A Resolution. Acta Crystallogr.,Sect.D V. 51 155 1995.
ISSN: ISSN 0907-4449
PubMed: 15299316
DOI: 10.1107/S0907444994010735