Iron in PDB 1fhj: Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
Protein crystallography data
The structure of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution., PDB code: 1fhj
was solved by
V.Fadel,
W.F.De Azevedo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.184,
87.725,
133.450,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.4 /
24.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
(pdb code 1fhj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution., PDB code: 1fhj:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1fhj
Go back to
Iron Binding Sites List in 1fhj
Iron binding site 1 out
of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:17.1
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
17.1
|
1.0
|
ND
|
A:HEM142
|
1.9
|
19.9
|
1.0
|
NA
|
A:HEM142
|
2.0
|
18.2
|
1.0
|
NC
|
A:HEM142
|
2.0
|
18.2
|
1.0
|
NB
|
A:HEM142
|
2.0
|
18.5
|
1.0
|
NE2
|
A:HIS87
|
2.4
|
15.6
|
1.0
|
O
|
A:HOH193
|
2.8
|
25.6
|
1.0
|
C1D
|
A:HEM142
|
3.0
|
20.2
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
19.7
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
18.4
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
20.1
|
1.0
|
C1C
|
A:HEM142
|
3.0
|
18.2
|
1.0
|
C4C
|
A:HEM142
|
3.0
|
18.1
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
17.3
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
17.2
|
1.0
|
CE1
|
A:HIS87
|
3.2
|
15.1
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
18.5
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
21.7
|
1.0
|
CHB
|
A:HEM142
|
3.4
|
18.1
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
19.4
|
1.0
|
CD2
|
A:HIS87
|
3.5
|
13.0
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
17.0
|
1.0
|
C2A
|
A:HEM142
|
4.2
|
21.0
|
1.0
|
C3D
|
A:HEM142
|
4.2
|
20.6
|
1.0
|
C2D
|
A:HEM142
|
4.2
|
20.6
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
18.8
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
18.2
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
18.2
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
17.0
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
18.2
|
1.0
|
ND1
|
A:HIS87
|
4.4
|
15.0
|
1.0
|
CE1
|
A:HIS58
|
4.5
|
16.1
|
1.0
|
CG
|
A:HIS87
|
4.5
|
13.3
|
1.0
|
CG2
|
A:VAL62
|
4.9
|
15.7
|
1.0
|
|
Iron binding site 2 out
of 4 in 1fhj
Go back to
Iron Binding Sites List in 1fhj
Iron binding site 2 out
of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:30.2
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
30.2
|
1.0
|
ND
|
B:HEM147
|
1.9
|
28.5
|
1.0
|
NA
|
B:HEM147
|
1.9
|
29.6
|
1.0
|
NB
|
B:HEM147
|
2.0
|
28.7
|
1.0
|
NC
|
B:HEM147
|
2.0
|
28.9
|
1.0
|
NE2
|
B:HIS92
|
2.2
|
29.4
|
1.0
|
C1A
|
B:HEM147
|
2.9
|
31.7
|
1.0
|
C4D
|
B:HEM147
|
2.9
|
30.4
|
1.0
|
C1D
|
B:HEM147
|
3.0
|
28.6
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
29.8
|
1.0
|
C1C
|
B:HEM147
|
3.0
|
28.6
|
1.0
|
C4A
|
B:HEM147
|
3.0
|
29.5
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
28.1
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
29.9
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
29.0
|
1.0
|
CD2
|
B:HIS92
|
3.2
|
28.6
|
1.0
|
CHA
|
B:HEM147
|
3.2
|
32.2
|
1.0
|
O
|
B:HOH182
|
3.2
|
31.5
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
30.3
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
27.9
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
29.7
|
1.0
|
C2A
|
B:HEM147
|
4.1
|
33.8
|
1.0
|
C3D
|
B:HEM147
|
4.2
|
31.2
|
1.0
|
NE2
|
B:HIS63
|
4.2
|
22.8
|
1.0
|
C2D
|
B:HEM147
|
4.2
|
29.3
|
1.0
|
C3A
|
B:HEM147
|
4.2
|
32.0
|
1.0
|
CG
|
B:HIS92
|
4.3
|
29.1
|
1.0
|
ND1
|
B:HIS92
|
4.3
|
29.1
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
28.4
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
30.9
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
27.5
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
30.0
|
1.0
|
CG2
|
B:VAL67
|
4.5
|
30.1
|
1.0
|
CE1
|
B:HIS63
|
4.9
|
22.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 1fhj
Go back to
Iron Binding Sites List in 1fhj
Iron binding site 3 out
of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:20.2
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
20.2
|
1.0
|
NB
|
C:HEM142
|
2.0
|
17.4
|
1.0
|
NA
|
C:HEM142
|
2.0
|
19.6
|
1.0
|
NC
|
C:HEM142
|
2.0
|
16.0
|
1.0
|
ND
|
C:HEM142
|
2.0
|
18.6
|
1.0
|
NE2
|
C:HIS87
|
2.3
|
16.5
|
1.0
|
O
|
C:HOH183
|
2.9
|
23.1
|
1.0
|
C4C
|
C:HEM142
|
3.0
|
16.4
|
1.0
|
C1B
|
C:HEM142
|
3.0
|
17.3
|
1.0
|
C4A
|
C:HEM142
|
3.0
|
21.1
|
1.0
|
C4B
|
C:HEM142
|
3.1
|
16.9
|
1.0
|
C1C
|
C:HEM142
|
3.1
|
15.4
|
1.0
|
C1D
|
C:HEM142
|
3.1
|
17.7
|
1.0
|
C4D
|
C:HEM142
|
3.1
|
20.9
|
1.0
|
C1A
|
C:HEM142
|
3.1
|
22.0
|
1.0
|
CE1
|
C:HIS87
|
3.3
|
18.5
|
1.0
|
CD2
|
C:HIS87
|
3.3
|
17.8
|
1.0
|
CHB
|
C:HEM142
|
3.4
|
20.0
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
18.9
|
1.0
|
CHC
|
C:HEM142
|
3.5
|
16.3
|
1.0
|
CHA
|
C:HEM142
|
3.5
|
22.6
|
1.0
|
C3C
|
C:HEM142
|
4.2
|
16.5
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
16.3
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
18.2
|
1.0
|
C3A
|
C:HEM142
|
4.3
|
23.3
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
19.0
|
1.0
|
C2A
|
C:HEM142
|
4.3
|
24.5
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
20.3
|
1.0
|
C3D
|
C:HEM142
|
4.3
|
20.4
|
1.0
|
NE2
|
C:HIS58
|
4.4
|
11.9
|
1.0
|
ND1
|
C:HIS87
|
4.4
|
19.0
|
1.0
|
CG
|
C:HIS87
|
4.5
|
18.9
|
1.0
|
CE1
|
C:HIS58
|
4.7
|
12.2
|
1.0
|
|
Iron binding site 4 out
of 4 in 1fhj
Go back to
Iron Binding Sites List in 1fhj
Iron binding site 4 out
of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:25.6
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
25.6
|
1.0
|
NA
|
D:HEM147
|
1.9
|
33.0
|
1.0
|
ND
|
D:HEM147
|
2.0
|
32.7
|
1.0
|
NC
|
D:HEM147
|
2.0
|
29.6
|
1.0
|
NB
|
D:HEM147
|
2.0
|
29.9
|
1.0
|
NE2
|
D:HIS92
|
2.1
|
30.6
|
1.0
|
C1A
|
D:HEM147
|
3.0
|
34.8
|
1.0
|
O
|
D:HOH190
|
3.0
|
34.4
|
1.0
|
CE1
|
D:HIS92
|
3.0
|
31.8
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
33.4
|
1.0
|
C4A
|
D:HEM147
|
3.0
|
33.7
|
1.0
|
C1D
|
D:HEM147
|
3.0
|
32.5
|
1.0
|
C4C
|
D:HEM147
|
3.1
|
28.2
|
1.0
|
C1B
|
D:HEM147
|
3.1
|
30.4
|
1.0
|
C1C
|
D:HEM147
|
3.1
|
27.2
|
1.0
|
C4B
|
D:HEM147
|
3.2
|
27.9
|
1.0
|
CD2
|
D:HIS92
|
3.2
|
29.6
|
1.0
|
CHA
|
D:HEM147
|
3.3
|
34.4
|
1.0
|
CHD
|
D:HEM147
|
3.4
|
30.6
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
31.9
|
1.0
|
CHC
|
D:HEM147
|
3.5
|
25.8
|
1.0
|
ND1
|
D:HIS92
|
4.2
|
32.4
|
1.0
|
NE2
|
D:HIS63
|
4.2
|
26.0
|
1.0
|
C2A
|
D:HEM147
|
4.2
|
36.5
|
1.0
|
C3A
|
D:HEM147
|
4.2
|
34.4
|
1.0
|
CG
|
D:HIS92
|
4.3
|
32.2
|
1.0
|
C3D
|
D:HEM147
|
4.3
|
33.1
|
1.0
|
C2D
|
D:HEM147
|
4.3
|
32.7
|
1.0
|
C3C
|
D:HEM147
|
4.3
|
25.9
|
1.0
|
C2B
|
D:HEM147
|
4.4
|
28.9
|
1.0
|
C2C
|
D:HEM147
|
4.4
|
26.6
|
1.0
|
C3B
|
D:HEM147
|
4.4
|
28.1
|
1.0
|
CE1
|
D:HIS63
|
4.6
|
23.8
|
1.0
|
CG2
|
D:VAL67
|
4.7
|
27.2
|
1.0
|
|
Reference:
V.Fadel,
F.Canduri,
J.R.Olivieri,
A.L.Smarra,
M.F.Colombo,
G.O.Bonilla-Rodriguez,
W.F.De Azevedo.
Crystal Structure of Hemoglobin From the Maned Wolf (Chrysocyon Brachyurus) Using Synchrotron Radiation. Protein Pept.Lett. V. 10 551 2003.
ISSN: ISSN 0929-8665
PubMed: 14683506
Page generated: Sat Aug 3 05:05:03 2024
|