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Iron in PDB 1fhj: Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.

Protein crystallography data

The structure of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution., PDB code: 1fhj was solved by V.Fadel, W.F.De Azevedo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.184, 87.725, 133.450, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 24.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. (pdb code 1fhj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution., PDB code: 1fhj:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1fhj

Go back to Iron Binding Sites List in 1fhj
Iron binding site 1 out of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:17.1
occ:1.00
FE A:HEM142 0.0 17.1 1.0
ND A:HEM142 1.9 19.9 1.0
NA A:HEM142 2.0 18.2 1.0
NC A:HEM142 2.0 18.2 1.0
NB A:HEM142 2.0 18.5 1.0
NE2 A:HIS87 2.4 15.6 1.0
O A:HOH193 2.8 25.6 1.0
C1D A:HEM142 3.0 20.2 1.0
C1A A:HEM142 3.0 19.7 1.0
C4A A:HEM142 3.0 18.4 1.0
C4D A:HEM142 3.0 20.1 1.0
C1C A:HEM142 3.0 18.2 1.0
C4C A:HEM142 3.0 18.1 1.0
C4B A:HEM142 3.1 17.3 1.0
C1B A:HEM142 3.1 17.2 1.0
CE1 A:HIS87 3.2 15.1 1.0
CHC A:HEM142 3.4 18.5 1.0
CHD A:HEM142 3.4 21.7 1.0
CHB A:HEM142 3.4 18.1 1.0
CHA A:HEM142 3.4 19.4 1.0
CD2 A:HIS87 3.5 13.0 1.0
NE2 A:HIS58 4.2 17.0 1.0
C2A A:HEM142 4.2 21.0 1.0
C3D A:HEM142 4.2 20.6 1.0
C2D A:HEM142 4.2 20.6 1.0
C3A A:HEM142 4.3 18.8 1.0
C2C A:HEM142 4.3 18.2 1.0
C3C A:HEM142 4.3 18.2 1.0
C2B A:HEM142 4.3 17.0 1.0
C3B A:HEM142 4.3 18.2 1.0
ND1 A:HIS87 4.4 15.0 1.0
CE1 A:HIS58 4.5 16.1 1.0
CG A:HIS87 4.5 13.3 1.0
CG2 A:VAL62 4.9 15.7 1.0

Iron binding site 2 out of 4 in 1fhj

Go back to Iron Binding Sites List in 1fhj
Iron binding site 2 out of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:30.2
occ:1.00
FE B:HEM147 0.0 30.2 1.0
ND B:HEM147 1.9 28.5 1.0
NA B:HEM147 1.9 29.6 1.0
NB B:HEM147 2.0 28.7 1.0
NC B:HEM147 2.0 28.9 1.0
NE2 B:HIS92 2.2 29.4 1.0
C1A B:HEM147 2.9 31.7 1.0
C4D B:HEM147 2.9 30.4 1.0
C1D B:HEM147 3.0 28.6 1.0
C4B B:HEM147 3.0 29.8 1.0
C1C B:HEM147 3.0 28.6 1.0
C4A B:HEM147 3.0 29.5 1.0
C4C B:HEM147 3.1 28.1 1.0
C1B B:HEM147 3.1 29.9 1.0
CE1 B:HIS92 3.1 29.0 1.0
CD2 B:HIS92 3.2 28.6 1.0
CHA B:HEM147 3.2 32.2 1.0
O B:HOH182 3.2 31.5 1.0
CHC B:HEM147 3.4 30.3 1.0
CHD B:HEM147 3.4 27.9 1.0
CHB B:HEM147 3.5 29.7 1.0
C2A B:HEM147 4.1 33.8 1.0
C3D B:HEM147 4.2 31.2 1.0
NE2 B:HIS63 4.2 22.8 1.0
C2D B:HEM147 4.2 29.3 1.0
C3A B:HEM147 4.2 32.0 1.0
CG B:HIS92 4.3 29.1 1.0
ND1 B:HIS92 4.3 29.1 1.0
C2C B:HEM147 4.3 28.4 1.0
C3B B:HEM147 4.3 30.9 1.0
C3C B:HEM147 4.3 27.5 1.0
C2B B:HEM147 4.3 30.0 1.0
CG2 B:VAL67 4.5 30.1 1.0
CE1 B:HIS63 4.9 22.6 1.0

Iron binding site 3 out of 4 in 1fhj

Go back to Iron Binding Sites List in 1fhj
Iron binding site 3 out of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe142

b:20.2
occ:1.00
FE C:HEM142 0.0 20.2 1.0
NB C:HEM142 2.0 17.4 1.0
NA C:HEM142 2.0 19.6 1.0
NC C:HEM142 2.0 16.0 1.0
ND C:HEM142 2.0 18.6 1.0
NE2 C:HIS87 2.3 16.5 1.0
O C:HOH183 2.9 23.1 1.0
C4C C:HEM142 3.0 16.4 1.0
C1B C:HEM142 3.0 17.3 1.0
C4A C:HEM142 3.0 21.1 1.0
C4B C:HEM142 3.1 16.9 1.0
C1C C:HEM142 3.1 15.4 1.0
C1D C:HEM142 3.1 17.7 1.0
C4D C:HEM142 3.1 20.9 1.0
C1A C:HEM142 3.1 22.0 1.0
CE1 C:HIS87 3.3 18.5 1.0
CD2 C:HIS87 3.3 17.8 1.0
CHB C:HEM142 3.4 20.0 1.0
CHD C:HEM142 3.4 18.9 1.0
CHC C:HEM142 3.5 16.3 1.0
CHA C:HEM142 3.5 22.6 1.0
C3C C:HEM142 4.2 16.5 1.0
C2C C:HEM142 4.3 16.3 1.0
C2B C:HEM142 4.3 18.2 1.0
C3A C:HEM142 4.3 23.3 1.0
C3B C:HEM142 4.3 19.0 1.0
C2A C:HEM142 4.3 24.5 1.0
C2D C:HEM142 4.3 20.3 1.0
C3D C:HEM142 4.3 20.4 1.0
NE2 C:HIS58 4.4 11.9 1.0
ND1 C:HIS87 4.4 19.0 1.0
CG C:HIS87 4.5 18.9 1.0
CE1 C:HIS58 4.7 12.2 1.0

Iron binding site 4 out of 4 in 1fhj

Go back to Iron Binding Sites List in 1fhj
Iron binding site 4 out of 4 in the Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Aquomet Hemoglobin-I of the Maned Wolf (Chrysocyon Brachyurus) at 2.0 Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:25.6
occ:1.00
FE D:HEM147 0.0 25.6 1.0
NA D:HEM147 1.9 33.0 1.0
ND D:HEM147 2.0 32.7 1.0
NC D:HEM147 2.0 29.6 1.0
NB D:HEM147 2.0 29.9 1.0
NE2 D:HIS92 2.1 30.6 1.0
C1A D:HEM147 3.0 34.8 1.0
O D:HOH190 3.0 34.4 1.0
CE1 D:HIS92 3.0 31.8 1.0
C4D D:HEM147 3.0 33.4 1.0
C4A D:HEM147 3.0 33.7 1.0
C1D D:HEM147 3.0 32.5 1.0
C4C D:HEM147 3.1 28.2 1.0
C1B D:HEM147 3.1 30.4 1.0
C1C D:HEM147 3.1 27.2 1.0
C4B D:HEM147 3.2 27.9 1.0
CD2 D:HIS92 3.2 29.6 1.0
CHA D:HEM147 3.3 34.4 1.0
CHD D:HEM147 3.4 30.6 1.0
CHB D:HEM147 3.4 31.9 1.0
CHC D:HEM147 3.5 25.8 1.0
ND1 D:HIS92 4.2 32.4 1.0
NE2 D:HIS63 4.2 26.0 1.0
C2A D:HEM147 4.2 36.5 1.0
C3A D:HEM147 4.2 34.4 1.0
CG D:HIS92 4.3 32.2 1.0
C3D D:HEM147 4.3 33.1 1.0
C2D D:HEM147 4.3 32.7 1.0
C3C D:HEM147 4.3 25.9 1.0
C2B D:HEM147 4.4 28.9 1.0
C2C D:HEM147 4.4 26.6 1.0
C3B D:HEM147 4.4 28.1 1.0
CE1 D:HIS63 4.6 23.8 1.0
CG2 D:VAL67 4.7 27.2 1.0

Reference:

V.Fadel, F.Canduri, J.R.Olivieri, A.L.Smarra, M.F.Colombo, G.O.Bonilla-Rodriguez, W.F.De Azevedo. Crystal Structure of Hemoglobin From the Maned Wolf (Chrysocyon Brachyurus) Using Synchrotron Radiation. Protein Pept.Lett. V. 10 551 2003.
ISSN: ISSN 0929-8665
PubMed: 14683506
Page generated: Sat Aug 3 05:05:03 2024

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