Iron in PDB 1g09: Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
Protein crystallography data
The structure of Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2, PDB code: 1g09
was solved by
T.C.Mueser,
P.H.Rogers,
A.Arnone,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.04
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.800,
160.200,
55.300,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
(pdb code 1g09). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2, PDB code: 1g09:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1g09
Go back to
Iron Binding Sites List in 1g09
Iron binding site 1 out
of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:18.4
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
18.4
|
1.0
|
C
|
A:CMO143
|
1.8
|
13.6
|
1.0
|
NA
|
A:HEM142
|
2.0
|
21.0
|
1.0
|
ND
|
A:HEM142
|
2.0
|
23.4
|
1.0
|
NC
|
A:HEM142
|
2.0
|
16.7
|
1.0
|
NB
|
A:HEM142
|
2.0
|
20.8
|
1.0
|
NE2
|
A:HIS87
|
2.0
|
11.8
|
1.0
|
O
|
A:CMO143
|
2.9
|
21.1
|
1.0
|
CE1
|
A:HIS87
|
2.9
|
9.6
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
21.4
|
1.0
|
C1C
|
A:HEM142
|
3.0
|
17.0
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
21.4
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
22.6
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
21.1
|
1.0
|
C4C
|
A:HEM142
|
3.1
|
18.9
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
23.0
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
20.6
|
1.0
|
CD2
|
A:HIS87
|
3.1
|
10.3
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
17.4
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
21.1
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
22.4
|
1.0
|
CHB
|
A:HEM142
|
3.4
|
19.3
|
1.0
|
ND1
|
A:HIS87
|
4.1
|
12.2
|
1.0
|
CG
|
A:HIS87
|
4.2
|
13.0
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
22.8
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
25.2
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
16.6
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
20.7
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
24.4
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
21.4
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
15.7
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
19.4
|
1.0
|
NE2
|
A:HIS58
|
4.3
|
17.1
|
1.0
|
|
Iron binding site 2 out
of 4 in 1g09
Go back to
Iron Binding Sites List in 1g09
Iron binding site 2 out
of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:18.6
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
18.6
|
1.0
|
C
|
B:CMO148
|
1.8
|
17.0
|
1.0
|
NA
|
B:HEM147
|
2.0
|
23.2
|
1.0
|
NB
|
B:HEM147
|
2.0
|
21.5
|
1.0
|
NC
|
B:HEM147
|
2.0
|
20.9
|
1.0
|
ND
|
B:HEM147
|
2.0
|
26.8
|
1.0
|
NE2
|
B:HIS92
|
2.1
|
12.6
|
1.0
|
O
|
B:CMO148
|
2.2
|
13.9
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
20.9
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
27.1
|
1.0
|
C4D
|
B:HEM147
|
3.0
|
28.3
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
22.3
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
14.5
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
21.4
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
20.6
|
1.0
|
CD2
|
B:HIS92
|
3.1
|
11.0
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
22.4
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
24.6
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
27.3
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
16.2
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
22.1
|
1.0
|
CHD
|
B:HEM147
|
3.5
|
23.6
|
1.0
|
ND1
|
B:HIS92
|
4.2
|
10.4
|
1.0
|
CG
|
B:HIS92
|
4.2
|
9.5
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
26.3
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
24.5
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
30.9
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
20.6
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
22.5
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
21.9
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
20.5
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
25.0
|
1.0
|
NE2
|
B:HIS63
|
4.5
|
18.8
|
1.0
|
CG2
|
B:VAL67
|
5.0
|
17.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 1g09
Go back to
Iron Binding Sites List in 1g09
Iron binding site 3 out
of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:15.6
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
15.6
|
1.0
|
C
|
C:CMO143
|
1.7
|
7.3
|
1.0
|
NC
|
C:HEM142
|
2.0
|
18.8
|
1.0
|
ND
|
C:HEM142
|
2.0
|
19.8
|
1.0
|
NA
|
C:HEM142
|
2.0
|
17.4
|
1.0
|
NB
|
C:HEM142
|
2.0
|
16.3
|
1.0
|
NE2
|
C:HIS87
|
2.1
|
9.5
|
1.0
|
O
|
C:CMO143
|
2.9
|
17.2
|
1.0
|
CE1
|
C:HIS87
|
3.0
|
11.4
|
1.0
|
C4C
|
C:HEM142
|
3.0
|
20.2
|
1.0
|
C1D
|
C:HEM142
|
3.0
|
22.0
|
1.0
|
C4D
|
C:HEM142
|
3.0
|
18.5
|
1.0
|
C1C
|
C:HEM142
|
3.0
|
13.0
|
1.0
|
C1A
|
C:HEM142
|
3.0
|
15.5
|
1.0
|
C4A
|
C:HEM142
|
3.1
|
17.2
|
1.0
|
C4B
|
C:HEM142
|
3.1
|
14.4
|
1.0
|
C1B
|
C:HEM142
|
3.1
|
13.5
|
1.0
|
CD2
|
C:HIS87
|
3.2
|
10.9
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
22.6
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
16.3
|
1.0
|
CHC
|
C:HEM142
|
3.4
|
11.8
|
1.0
|
CHB
|
C:HEM142
|
3.4
|
13.9
|
1.0
|
ND1
|
C:HIS87
|
4.1
|
12.5
|
1.0
|
CG
|
C:HIS87
|
4.2
|
12.7
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
19.2
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
16.4
|
1.0
|
C2A
|
C:HEM142
|
4.3
|
20.5
|
1.0
|
C3D
|
C:HEM142
|
4.3
|
20.7
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
22.0
|
1.0
|
C3A
|
C:HEM142
|
4.3
|
18.4
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
14.3
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
14.7
|
1.0
|
NE2
|
C:HIS58
|
4.4
|
17.8
|
1.0
|
CG2
|
C:VAL62
|
4.9
|
10.7
|
1.0
|
|
Iron binding site 4 out
of 4 in 1g09
Go back to
Iron Binding Sites List in 1g09
Iron binding site 4 out
of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Carbonmonoxy Liganded Bovine Hemoglobin pH 7.2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:14.2
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
14.2
|
1.0
|
C
|
D:CMO148
|
1.8
|
12.4
|
1.0
|
ND
|
D:HEM147
|
2.0
|
13.6
|
1.0
|
NB
|
D:HEM147
|
2.0
|
13.7
|
1.0
|
NA
|
D:HEM147
|
2.0
|
17.3
|
1.0
|
NC
|
D:HEM147
|
2.0
|
13.0
|
1.0
|
NE2
|
D:HIS92
|
2.0
|
7.3
|
1.0
|
O
|
D:CMO148
|
2.9
|
16.8
|
1.0
|
CD2
|
D:HIS92
|
3.0
|
13.5
|
1.0
|
CE1
|
D:HIS92
|
3.0
|
9.7
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
14.6
|
1.0
|
C4B
|
D:HEM147
|
3.0
|
12.9
|
1.0
|
C1D
|
D:HEM147
|
3.0
|
16.4
|
1.0
|
C1A
|
D:HEM147
|
3.0
|
18.9
|
1.0
|
C1B
|
D:HEM147
|
3.1
|
14.2
|
1.0
|
C1C
|
D:HEM147
|
3.1
|
12.7
|
1.0
|
C4C
|
D:HEM147
|
3.1
|
13.9
|
1.0
|
C4A
|
D:HEM147
|
3.1
|
19.0
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
14.2
|
1.0
|
CHD
|
D:HEM147
|
3.4
|
16.1
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
15.6
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
11.5
|
1.0
|
ND1
|
D:HIS92
|
4.1
|
10.3
|
1.0
|
CG
|
D:HIS92
|
4.2
|
9.1
|
1.0
|
C3D
|
D:HEM147
|
4.3
|
20.1
|
1.0
|
C2D
|
D:HEM147
|
4.3
|
18.2
|
1.0
|
C2A
|
D:HEM147
|
4.3
|
20.4
|
1.0
|
C2B
|
D:HEM147
|
4.3
|
11.6
|
1.0
|
C3B
|
D:HEM147
|
4.3
|
14.3
|
1.0
|
C3A
|
D:HEM147
|
4.3
|
18.9
|
1.0
|
C2C
|
D:HEM147
|
4.3
|
15.3
|
1.0
|
C3C
|
D:HEM147
|
4.3
|
14.7
|
1.0
|
NE2
|
D:HIS63
|
4.4
|
14.6
|
1.0
|
CG2
|
D:VAL67
|
4.7
|
8.3
|
1.0
|
|
Reference:
T.C.Mueser,
P.H.Rogers,
A.Arnone.
Interface Sliding As Illustrated By the Multiple Quaternary Structures of Liganded Hemoglobin. Biochemistry V. 39 15353 2000.
ISSN: ISSN 0006-2960
PubMed: 11112521
DOI: 10.1021/BI0012944
Page generated: Sat Aug 3 05:43:52 2024
|