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Iron in PDB 1g0a: Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5

Protein crystallography data

The structure of Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5, PDB code: 1g0a was solved by T.C.Mueser, P.H.Rogers, A.Arnone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.800, 131.400, 63.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5 (pdb code 1g0a). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5, PDB code: 1g0a:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1g0a

Go back to Iron Binding Sites List in 1g0a
Iron binding site 1 out of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:14.1
occ:1.00
FE A:HEM142 0.0 14.1 1.0
C A:CMO143 1.8 10.0 1.0
NA A:HEM142 2.0 13.4 1.0
ND A:HEM142 2.0 15.2 1.0
NB A:HEM142 2.0 8.6 1.0
NC A:HEM142 2.0 11.6 1.0
NE2 A:HIS87 2.1 7.4 1.0
O A:CMO143 2.9 7.9 1.0
CE1 A:HIS87 3.0 6.8 1.0
C4A A:HEM142 3.0 13.6 1.0
C1B A:HEM142 3.0 12.3 1.0
C4D A:HEM142 3.0 16.8 1.0
C1A A:HEM142 3.0 14.1 1.0
C1D A:HEM142 3.0 15.5 1.0
C4C A:HEM142 3.1 10.4 1.0
C4B A:HEM142 3.1 8.8 1.0
C1C A:HEM142 3.1 10.1 1.0
CD2 A:HIS87 3.1 3.4 1.0
CHB A:HEM142 3.4 13.3 1.0
CHD A:HEM142 3.4 12.3 1.0
CHC A:HEM142 3.4 8.9 1.0
CHA A:HEM142 3.4 11.9 1.0
ND1 A:HIS87 4.1 13.4 1.0
CG A:HIS87 4.2 3.6 1.0
C2A A:HEM142 4.3 15.9 1.0
C3D A:HEM142 4.3 17.0 1.0
C3A A:HEM142 4.3 12.5 1.0
C2D A:HEM142 4.3 14.3 1.0
C2B A:HEM142 4.3 13.2 1.0
C3C A:HEM142 4.3 9.2 1.0
C3B A:HEM142 4.3 11.1 1.0
C2C A:HEM142 4.3 8.3 1.0
NE2 A:HIS58 4.6 16.0 1.0

Iron binding site 2 out of 4 in 1g0a

Go back to Iron Binding Sites List in 1g0a
Iron binding site 2 out of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:15.5
occ:1.00
FE B:HEM147 0.0 15.5 1.0
C B:CMO148 1.8 13.5 1.0
ND B:HEM147 2.0 15.6 1.0
NA B:HEM147 2.0 15.0 1.0
NB B:HEM147 2.0 12.1 1.0
NC B:HEM147 2.0 13.3 1.0
NE2 B:HIS92 2.1 13.8 1.0
O B:CMO148 2.9 15.2 1.0
C1A B:HEM147 3.0 17.3 1.0
C4D B:HEM147 3.0 18.4 1.0
C1D B:HEM147 3.0 18.2 1.0
C4B B:HEM147 3.0 13.5 1.0
CE1 B:HIS92 3.0 10.1 1.0
C4A B:HEM147 3.0 16.1 1.0
C1B B:HEM147 3.1 14.9 1.0
C4C B:HEM147 3.1 11.3 1.0
C1C B:HEM147 3.1 8.0 1.0
CD2 B:HIS92 3.1 15.3 1.0
CHA B:HEM147 3.4 17.5 1.0
CHC B:HEM147 3.4 9.7 1.0
CHD B:HEM147 3.4 15.2 1.0
CHB B:HEM147 3.4 14.1 1.0
ND1 B:HIS92 4.2 11.7 1.0
C2A B:HEM147 4.2 17.7 1.0
C3D B:HEM147 4.3 22.2 1.0
CG B:HIS92 4.3 10.3 1.0
C3B B:HEM147 4.3 11.9 1.0
C2D B:HEM147 4.3 18.5 1.0
C2B B:HEM147 4.3 12.5 1.0
C3A B:HEM147 4.3 15.2 1.0
C2C B:HEM147 4.3 7.1 1.0
C3C B:HEM147 4.3 7.5 1.0
NE2 B:HIS63 4.3 28.8 1.0
CG2 B:VAL67 4.7 11.9 1.0

Iron binding site 3 out of 4 in 1g0a

Go back to Iron Binding Sites List in 1g0a
Iron binding site 3 out of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe142

b:13.9
occ:1.00
FE C:HEM142 0.0 13.9 1.0
C C:CMO143 1.8 11.6 1.0
NA C:HEM142 2.0 10.4 1.0
NC C:HEM142 2.0 11.7 1.0
ND C:HEM142 2.0 14.6 1.0
NB C:HEM142 2.0 11.8 1.0
NE2 C:HIS87 2.2 4.9 1.0
O C:CMO143 2.9 15.2 1.0
C1A C:HEM142 3.0 15.0 1.0
C4A C:HEM142 3.0 15.6 1.0
C1C C:HEM142 3.0 10.4 1.0
C4C C:HEM142 3.0 12.9 1.0
C4D C:HEM142 3.0 13.4 1.0
C4B C:HEM142 3.1 9.0 1.0
C1B C:HEM142 3.1 11.1 1.0
C1D C:HEM142 3.1 13.4 1.0
CD2 C:HIS87 3.1 5.5 1.0
CE1 C:HIS87 3.1 6.4 1.0
CHA C:HEM142 3.4 13.2 1.0
CHC C:HEM142 3.4 8.2 1.0
CHB C:HEM142 3.4 11.2 1.0
CHD C:HEM142 3.5 13.6 1.0
C2A C:HEM142 4.2 16.0 1.0
ND1 C:HIS87 4.2 7.8 1.0
C3A C:HEM142 4.3 14.4 1.0
C2C C:HEM142 4.3 10.6 1.0
C3C C:HEM142 4.3 11.5 1.0
CG C:HIS87 4.3 6.1 1.0
C3D C:HEM142 4.3 11.5 1.0
C3B C:HEM142 4.3 9.2 1.0
C2D C:HEM142 4.3 13.7 1.0
C2B C:HEM142 4.3 10.2 1.0
NE2 C:HIS58 4.6 8.7 1.0
CG2 C:VAL62 5.0 17.1 1.0

Iron binding site 4 out of 4 in 1g0a

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Iron binding site 4 out of 4 in the Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Carbonmonoxy Liganded Bovine Hemoglobin pH 8.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:23.6
occ:1.00
FE D:HEM147 0.0 23.6 1.0
C D:CMO148 1.7 17.5 1.0
ND D:HEM147 2.0 29.4 1.0
NA D:HEM147 2.0 29.0 1.0
NB D:HEM147 2.0 23.2 1.0
NC D:HEM147 2.0 22.4 1.0
NE2 D:HIS92 2.2 22.6 1.0
O D:CMO148 2.7 18.9 1.0
C4D D:HEM147 3.0 34.0 1.0
C1A D:HEM147 3.0 29.5 1.0
C1D D:HEM147 3.0 32.2 1.0
C4C D:HEM147 3.1 22.3 1.0
C4B D:HEM147 3.1 23.1 1.0
C4A D:HEM147 3.1 24.2 1.0
C1B D:HEM147 3.1 23.5 1.0
C1C D:HEM147 3.1 20.2 1.0
CD2 D:HIS92 3.1 24.7 1.0
CE1 D:HIS92 3.3 22.4 1.0
CHA D:HEM147 3.4 33.4 1.0
CHC D:HEM147 3.4 21.7 1.0
CHD D:HEM147 3.4 27.1 1.0
CHB D:HEM147 3.5 19.9 1.0
C2A D:HEM147 4.2 31.0 1.0
NE2 D:HIS63 4.2 30.4 1.0
C3D D:HEM147 4.2 35.3 1.0
C2D D:HEM147 4.3 32.7 1.0
C3A D:HEM147 4.3 27.8 1.0
C2C D:HEM147 4.3 20.1 1.0
C3C D:HEM147 4.3 21.2 1.0
C3B D:HEM147 4.3 25.1 1.0
C2B D:HEM147 4.3 24.4 1.0
CG D:HIS92 4.3 28.7 1.0
ND1 D:HIS92 4.3 20.5 1.0
CG2 D:VAL67 4.6 18.5 1.0

Reference:

T.C.Mueser, P.H.Rogers, A.Arnone. Interface Sliding As Illustrated By the Multiple Quaternary Structures of Liganded Hemoglobin. Biochemistry V. 39 15353 2000.
ISSN: ISSN 0006-2960
PubMed: 11112521
DOI: 10.1021/BI0012944
Page generated: Sat Aug 3 05:43:54 2024

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