Atomistry » Iron » PDB 1fz2-1gek » 1gcw
Atomistry »
  Iron »
    PDB 1fz2-1gek »
      1gcw »

Iron in PDB 1gcw: Co Form Hemoglobin From Mustelus Griseus

Protein crystallography data

The structure of Co Form Hemoglobin From Mustelus Griseus, PDB code: 1gcw was solved by Y.Naoi, K.T.Chong, K.Yoshimatsu, G.Miyazaki, J.R.H.Tame, S.Y.Park, S.I.Adachi, H.Morimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.700, 80.450, 114.830, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25.5

Iron Binding Sites:

The binding sites of Iron atom in the Co Form Hemoglobin From Mustelus Griseus (pdb code 1gcw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Co Form Hemoglobin From Mustelus Griseus, PDB code: 1gcw:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1gcw

Go back to Iron Binding Sites List in 1gcw
Iron binding site 1 out of 4 in the Co Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Co Form Hemoglobin From Mustelus Griseus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe141

b:24.5
occ:1.00
FE A:HEM141 0.0 24.5 1.0
NA A:HEM141 1.9 12.4 1.0
C A:CMO142 1.9 22.6 1.0
ND A:HEM141 2.0 18.6 1.0
NC A:HEM141 2.0 15.5 1.0
NB A:HEM141 2.0 15.8 1.0
NE2 A:HIS87 2.2 16.6 1.0
C1A A:HEM141 2.9 23.1 1.0
C4D A:HEM141 3.0 16.5 1.0
C4A A:HEM141 3.0 19.3 1.0
C1C A:HEM141 3.0 19.2 1.0
O A:CMO142 3.0 29.6 1.0
C1D A:HEM141 3.0 22.7 1.0
C4C A:HEM141 3.0 19.9 1.0
CE1 A:HIS87 3.1 17.6 1.0
C4B A:HEM141 3.1 15.7 1.0
C1B A:HEM141 3.1 13.8 1.0
CD2 A:HIS87 3.3 18.2 1.0
CHA A:HEM141 3.3 20.6 1.0
CHC A:HEM141 3.4 14.9 1.0
CHD A:HEM141 3.5 22.1 1.0
CHB A:HEM141 3.5 15.5 1.0
C3D A:HEM141 4.2 20.5 1.0
C2A A:HEM141 4.2 19.6 1.0
C3A A:HEM141 4.2 17.1 1.0
C2D A:HEM141 4.3 23.8 1.0
C3C A:HEM141 4.3 18.2 1.0
C2C A:HEM141 4.3 15.2 1.0
ND1 A:HIS87 4.3 19.9 1.0
C2B A:HEM141 4.3 13.9 1.0
CG A:HIS87 4.3 17.0 1.0
C3B A:HEM141 4.4 20.8 1.0
CE1 A:HIS58 4.8 33.5 1.0

Iron binding site 2 out of 4 in 1gcw

Go back to Iron Binding Sites List in 1gcw
Iron binding site 2 out of 4 in the Co Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Co Form Hemoglobin From Mustelus Griseus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe136

b:36.9
occ:1.00
FE B:HEM136 0.0 36.9 1.0
C B:CMO137 1.9 28.8 1.0
NB B:HEM136 2.0 36.4 1.0
ND B:HEM136 2.0 44.8 1.0
NA B:HEM136 2.0 43.1 1.0
NC B:HEM136 2.0 39.6 1.0
NE2 B:HIS82 2.3 34.7 1.0
O B:CMO137 3.0 37.1 1.0
C4B B:HEM136 3.0 35.5 1.0
C4D B:HEM136 3.0 49.2 1.0
C1B B:HEM136 3.0 39.7 1.0
C1D B:HEM136 3.1 46.4 1.0
C1C B:HEM136 3.1 35.4 1.0
C1A B:HEM136 3.1 42.9 1.0
C4A B:HEM136 3.1 42.3 1.0
C4C B:HEM136 3.1 38.0 1.0
CE1 B:HIS82 3.2 35.9 1.0
CD2 B:HIS82 3.3 39.9 1.0
CHC B:HEM136 3.4 38.3 1.0
CHA B:HEM136 3.4 46.1 1.0
CHB B:HEM136 3.5 39.5 1.0
CHD B:HEM136 3.5 43.3 1.0
C3B B:HEM136 4.3 41.1 1.0
C3D B:HEM136 4.3 50.8 1.0
C2B B:HEM136 4.3 41.4 1.0
C2D B:HEM136 4.3 47.5 1.0
C3A B:HEM136 4.3 44.8 1.0
C2C B:HEM136 4.3 33.5 1.0
C3C B:HEM136 4.3 36.4 1.0
C2A B:HEM136 4.3 45.5 1.0
CG B:HIS82 4.4 39.3 1.0
ND1 B:HIS82 4.4 38.4 1.0
NE2 B:HIS53 4.7 47.0 1.0

Iron binding site 3 out of 4 in 1gcw

Go back to Iron Binding Sites List in 1gcw
Iron binding site 3 out of 4 in the Co Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Co Form Hemoglobin From Mustelus Griseus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe141

b:32.0
occ:1.00
FE C:HEM141 0.0 32.0 1.0
C C:CMO142 1.9 31.2 1.0
NA C:HEM141 2.0 39.9 1.0
NB C:HEM141 2.0 40.5 1.0
NC C:HEM141 2.0 37.8 1.0
ND C:HEM141 2.0 42.2 1.0
NE2 C:HIS87 2.1 25.6 1.0
CD2 C:HIS87 3.0 27.0 1.0
O C:CMO142 3.0 34.5 1.0
C1B C:HEM141 3.0 42.5 1.0
C1A C:HEM141 3.0 41.7 1.0
C1C C:HEM141 3.1 38.3 1.0
C4A C:HEM141 3.1 40.1 1.0
C4B C:HEM141 3.1 38.2 1.0
C4D C:HEM141 3.1 43.5 1.0
C1D C:HEM141 3.1 41.2 1.0
C4C C:HEM141 3.1 34.9 1.0
CE1 C:HIS87 3.2 29.3 1.0
CHA C:HEM141 3.4 44.5 1.0
CHB C:HEM141 3.4 42.7 1.0
CHC C:HEM141 3.4 38.9 1.0
CHD C:HEM141 3.5 38.7 1.0
CG C:HIS87 4.1 27.0 1.0
C2A C:HEM141 4.3 45.0 1.0
C3A C:HEM141 4.3 42.5 1.0
C2D C:HEM141 4.3 43.3 1.0
C2C C:HEM141 4.3 38.7 1.0
C2B C:HEM141 4.3 41.6 1.0
C3B C:HEM141 4.3 36.8 1.0
C3C C:HEM141 4.3 33.8 1.0
C3D C:HEM141 4.3 46.6 1.0
ND1 C:HIS87 4.3 28.4 1.0
NE2 C:HIS58 4.7 39.9 1.0

Iron binding site 4 out of 4 in 1gcw

Go back to Iron Binding Sites List in 1gcw
Iron binding site 4 out of 4 in the Co Form Hemoglobin From Mustelus Griseus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Co Form Hemoglobin From Mustelus Griseus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe136

b:44.7
occ:1.00
FE D:HEM136 0.0 44.7 1.0
C D:CMO137 1.9 42.5 1.0
NA D:HEM136 2.0 47.5 1.0
NB D:HEM136 2.0 41.5 1.0
ND D:HEM136 2.0 50.4 1.0
NC D:HEM136 2.0 44.5 1.0
NE2 D:HIS82 2.3 48.1 1.0
O D:CMO137 3.0 42.4 1.0
C1B D:HEM136 3.0 41.2 1.0
C4A D:HEM136 3.0 45.9 1.0
C1A D:HEM136 3.0 52.2 1.0
C4D D:HEM136 3.0 54.3 1.0
C4B D:HEM136 3.1 37.2 1.0
C1D D:HEM136 3.1 50.2 1.0
C1C D:HEM136 3.1 41.2 1.0
C4C D:HEM136 3.1 42.7 1.0
CD2 D:HIS82 3.2 49.7 1.0
CE1 D:HIS82 3.3 50.4 1.0
CHA D:HEM136 3.4 53.0 1.0
CHB D:HEM136 3.4 43.9 1.0
CHC D:HEM136 3.5 38.0 1.0
CHD D:HEM136 3.5 46.5 1.0
C3A D:HEM136 4.3 50.6 1.0
C2B D:HEM136 4.3 42.1 1.0
C3B D:HEM136 4.3 40.6 1.0
C3D D:HEM136 4.3 56.0 1.0
C2D D:HEM136 4.3 51.5 1.0
C2A D:HEM136 4.3 53.9 1.0
C2C D:HEM136 4.3 41.6 1.0
C3C D:HEM136 4.3 41.2 1.0
CG D:HIS82 4.4 51.5 1.0
ND1 D:HIS82 4.5 51.5 1.0
NE2 D:HIS53 4.8 58.5 1.0
CG2 D:VAL57 4.9 43.3 1.0

Reference:

Y.Naoi, K.T.Chong, K.Yoshimatsu, G.Miyazaki, J.R.Tame, S.Y.Park, S.Adachi, H.Morimoto. The Functional Similarity and Structural Diversity of Human and Cartilaginous Fish Hemoglobins. J.Mol.Biol. V. 307 259 2001.
ISSN: ISSN 0022-2836
PubMed: 11243818
DOI: 10.1006/JMBI.2000.4446
Page generated: Sat Aug 3 05:53:20 2024

Last articles

Cl in 3BFT
Cl in 3BFH
Cl in 3BFB
Cl in 3BE5
Cl in 3BDV
Cl in 3BBJ
Cl in 3BBT
Cl in 3BD1
Cl in 3BCT
Cl in 3BCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy