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Iron in PDB 1gdk: Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian)

Protein crystallography data

The structure of Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian), PDB code: 1gdk was solved by E.Harutyunyan, T.Safonova, I.Kuranova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.900, 51.930, 38.240, 90.00, 98.80, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian) (pdb code 1gdk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian), PDB code: 1gdk:

Iron binding site 1 out of 1 in 1gdk

Go back to Iron Binding Sites List in 1gdk
Iron binding site 1 out of 1 in the Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:18.6
occ:1.00
FE A:HEM154 0.0 18.6 1.0
NA A:HEM154 1.8 19.3 1.0
NE2 A:HIS97 2.0 5.4 1.0
ND A:HEM154 2.0 20.0 1.0
NB A:HEM154 2.1 16.1 1.0
NC A:HEM154 2.1 10.4 1.0
C1 A:ISQ500 2.3 12.8 1.0
C4A A:HEM154 2.8 20.3 1.0
C1A A:HEM154 2.8 20.2 1.0
CE1 A:HIS97 2.8 10.9 1.0
C1B A:HEM154 3.0 14.5 1.0
C4D A:HEM154 3.1 16.5 1.0
N2 A:ISQ500 3.1 21.0 1.0
C1D A:HEM154 3.1 17.7 1.0
C4C A:HEM154 3.1 9.5 1.0
CD2 A:HIS97 3.1 11.7 1.0
C1C A:HEM154 3.2 5.9 1.0
C4B A:HEM154 3.2 11.8 1.0
CHB A:HEM154 3.3 12.9 1.0
CHA A:HEM154 3.3 15.6 1.0
C8A A:ISQ500 3.4 22.9 1.0
CHD A:HEM154 3.5 10.9 1.0
CHC A:HEM154 3.6 12.6 1.0
C8 A:ISQ500 3.7 17.9 1.0
C2A A:HEM154 4.0 19.2 1.0
ND1 A:HIS97 4.0 8.7 1.0
C3A A:HEM154 4.0 20.0 1.0
CG A:HIS97 4.2 11.3 1.0
C2B A:HEM154 4.3 14.9 1.0
C3D A:HEM154 4.3 18.7 1.0
C3B A:HEM154 4.3 13.4 1.0
C2D A:HEM154 4.3 18.4 1.0
C3C A:HEM154 4.3 8.5 1.0
C2C A:HEM154 4.4 1.4 1.0
C3 A:ISQ500 4.4 20.7 1.0
C4A A:ISQ500 4.7 23.7 1.0

Reference:

T.N.Safonova, A.V.Teplyakov, G.V.Obmolova, A.N.Popov, I.P.Kuranova, E.G.Harutyunyan. Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian) Bioorg.Khim. V. 17 1605 1991.
ISSN: ISSN 0132-3423
Page generated: Sun Dec 13 14:15:18 2020

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