Iron in PDB 1gdv: Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution

The structure of Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution, PDB code: 1gdv was solved by S.Yamada, S.-Y.Park, H.Shimizu, Y.Shiro, T.Oku, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.57
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	49.260, 49.260, 83.450, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25.4

The binding sites of Iron atom in the Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution (pdb code 1gdv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution, PDB code: 1gdv:

Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C6 From Red Alga Porphyra Yezoensis at 1.57 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe101 b:13.8 occ:1.00 FE A:HEC101 0.0 13.8 1.0 NB A:HEC101 1.9 13.1 1.0 NA A:HEC101 1.9 13.4 1.0 ND A:HEC101 2.0 13.6 1.0 NC A:HEC101 2.0 13.2 1.0 NE2 A:HIS18 2.1 13.5 1.0 SD A:MET58 2.3 14.5 1.0 C1B A:HEC101 3.0 13.9 1.0 C4A A:HEC101 3.0 14.1 1.0 C1A A:HEC101 3.0 13.8 1.0 C4B A:HEC101 3.0 13.9 1.0 CE1 A:HIS18 3.0 13.3 1.0 C4C A:HEC101 3.0 13.2 1.0 C1D A:HEC101 3.0 12.7 1.0 C4D A:HEC101 3.0 13.1 1.0 C1C A:HEC101 3.1 13.2 1.0 CD2 A:HIS18 3.1 14.2 1.0 CE A:MET58 3.4 15.0 1.0 CHB A:HEC101 3.4 13.7 1.0 CHD A:HEC101 3.4 12.9 1.0 CHA A:HEC101 3.4 13.9 1.0 CHC A:HEC101 3.4 13.5 1.0 CG A:MET58 3.4 15.2 1.0 CB A:MET58 4.1 14.4 1.0 CG A:HIS18 4.2 13.3 1.0 ND1 A:HIS18 4.2 13.8 1.0 C3A A:HEC101 4.2 15.1 1.0 C2A A:HEC101 4.3 15.3 1.0 C3C A:HEC101 4.3 13.4 1.0 C2B A:HEC101 4.3 14.8 1.0 C2C A:HEC101 4.3 11.9 1.0 C2D A:HEC101 4.3 14.4 1.0 C3D A:HEC101 4.3 14.9 1.0 C3B A:HEC101 4.3 14.6 1.0

S.Yamada, S.Y.Park, H.Shimizu, Y.Koshizuka, K.Kadokura, T.Satoh, K.Suruga, M.Ogawa, Y.Isogai, T.Nishio, Y.Shiro, T.Oku. Structure of Cytochrome C6 From the Red Alga Porphyra Yezoensis at 1. 57 A Resolution. Acta Crystallogr.,Sect.D V. 56 1577 2000.
ISSN: ISSN 0907-4449
PubMed: 11092924
DOI: 10.1107/S090744490001461X