Iron in PDB 1gws: Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
Protein crystallography data
The structure of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough, PDB code: 1gws
was solved by
M.Czjzek,
R.Haser,
M.Bruschi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
33.52 /
2.40
|
|
Space group
|
P 62
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
108.386,
108.386,
102.809,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
20.1 /
27.6
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
(pdb code 1gws). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough, PDB code: 1gws:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 1 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:22.2
occ:1.00
|
FE
|
A:HEC601
|
0.0
|
22.2
|
1.0
|
|
NB
|
A:HEC601
|
1.9
|
25.2
|
1.0
|
|
NC
|
A:HEC601
|
1.9
|
25.1
|
1.0
|
|
NA
|
A:HEC601
|
2.0
|
25.0
|
1.0
|
|
NE2
|
A:HIS35
|
2.0
|
27.3
|
1.0
|
|
NE2
|
A:HIS53
|
2.0
|
19.6
|
1.0
|
|
ND
|
A:HEC601
|
2.1
|
23.8
|
1.0
|
|
CE1
|
A:HIS53
|
2.7
|
23.4
|
1.0
|
|
C4B
|
A:HEC601
|
2.9
|
21.4
|
1.0
|
|
C1C
|
A:HEC601
|
2.9
|
20.6
|
1.0
|
|
C1B
|
A:HEC601
|
3.0
|
22.5
|
1.0
|
|
C4A
|
A:HEC601
|
3.0
|
22.6
|
1.0
|
|
CE1
|
A:HIS35
|
3.0
|
23.4
|
1.0
|
|
C4C
|
A:HEC601
|
3.0
|
24.8
|
1.0
|
|
CD2
|
A:HIS35
|
3.0
|
22.1
|
1.0
|
|
C1A
|
A:HEC601
|
3.1
|
23.1
|
1.0
|
|
C4D
|
A:HEC601
|
3.1
|
21.5
|
1.0
|
|
C1D
|
A:HEC601
|
3.1
|
22.4
|
1.0
|
|
CD2
|
A:HIS53
|
3.2
|
19.7
|
1.0
|
|
CHC
|
A:HEC601
|
3.3
|
22.4
|
1.0
|
|
CHB
|
A:HEC601
|
3.3
|
20.0
|
1.0
|
|
CHD
|
A:HEC601
|
3.4
|
25.8
|
1.0
|
|
CHA
|
A:HEC601
|
3.4
|
21.8
|
1.0
|
|
ND1
|
A:HIS53
|
4.0
|
19.2
|
1.0
|
|
ND1
|
A:HIS35
|
4.1
|
21.2
|
1.0
|
|
C3B
|
A:HEC601
|
4.1
|
17.4
|
1.0
|
|
CG
|
A:HIS35
|
4.1
|
21.8
|
1.0
|
|
C2C
|
A:HEC601
|
4.2
|
24.4
|
1.0
|
|
C2B
|
A:HEC601
|
4.2
|
16.7
|
1.0
|
|
C3C
|
A:HEC601
|
4.2
|
22.9
|
1.0
|
|
CG
|
A:HIS53
|
4.2
|
25.9
|
1.0
|
|
C3A
|
A:HEC601
|
4.2
|
23.2
|
1.0
|
|
C2A
|
A:HEC601
|
4.3
|
25.2
|
1.0
|
|
C3D
|
A:HEC601
|
4.3
|
23.1
|
1.0
|
|
C2D
|
A:HEC601
|
4.3
|
20.8
|
1.0
|
|
Iron binding site 2 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 2 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:21.1
occ:1.00
|
FE
|
A:HEC602
|
0.0
|
21.1
|
1.0
|
|
NE2
|
A:HIS38
|
1.8
|
20.0
|
1.0
|
|
NA
|
A:HEC602
|
1.9
|
20.9
|
1.0
|
|
NC
|
A:HEC602
|
1.9
|
19.0
|
1.0
|
|
ND
|
A:HEC602
|
2.0
|
19.0
|
1.0
|
|
NB
|
A:HEC602
|
2.0
|
19.7
|
1.0
|
|
NE2
|
A:HIS87
|
2.1
|
24.8
|
1.0
|
|
CE1
|
A:HIS38
|
2.8
|
18.6
|
1.0
|
|
C4D
|
A:HEC602
|
2.9
|
20.8
|
1.0
|
|
CD2
|
A:HIS38
|
2.9
|
16.6
|
1.0
|
|
CE1
|
A:HIS87
|
2.9
|
25.4
|
1.0
|
|
C1A
|
A:HEC602
|
2.9
|
22.6
|
1.0
|
|
C4A
|
A:HEC602
|
3.0
|
25.1
|
1.0
|
|
C1C
|
A:HEC602
|
3.0
|
24.0
|
1.0
|
|
C4C
|
A:HEC602
|
3.0
|
21.4
|
1.0
|
|
C4B
|
A:HEC602
|
3.0
|
22.0
|
1.0
|
|
C1D
|
A:HEC602
|
3.0
|
20.3
|
1.0
|
|
C1B
|
A:HEC602
|
3.0
|
20.2
|
1.0
|
|
CD2
|
A:HIS87
|
3.1
|
27.9
|
1.0
|
|
CHA
|
A:HEC602
|
3.2
|
24.5
|
1.0
|
|
CHD
|
A:HEC602
|
3.4
|
19.6
|
1.0
|
|
CHC
|
A:HEC602
|
3.4
|
21.9
|
1.0
|
|
CHB
|
A:HEC602
|
3.5
|
20.4
|
1.0
|
|
ND1
|
A:HIS38
|
3.9
|
16.2
|
1.0
|
|
CG
|
A:HIS38
|
4.0
|
17.6
|
1.0
|
|
ND1
|
A:HIS87
|
4.1
|
22.7
|
1.0
|
|
C2A
|
A:HEC602
|
4.2
|
23.0
|
1.0
|
|
C3D
|
A:HEC602
|
4.2
|
23.3
|
1.0
|
|
C3A
|
A:HEC602
|
4.2
|
22.1
|
1.0
|
|
CG
|
A:HIS87
|
4.2
|
25.6
|
1.0
|
|
C2B
|
A:HEC602
|
4.2
|
22.0
|
1.0
|
|
C3B
|
A:HEC602
|
4.2
|
20.9
|
1.0
|
|
C2D
|
A:HEC602
|
4.3
|
20.9
|
1.0
|
|
C3C
|
A:HEC602
|
4.3
|
20.9
|
1.0
|
|
C2C
|
A:HEC602
|
4.3
|
24.2
|
1.0
|
|
CE2
|
A:PHE33
|
4.6
|
17.2
|
1.0
|
|
CA
|
A:GLY98
|
4.7
|
28.3
|
1.0
|
|
Iron binding site 3 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 3 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:22.3
occ:1.00
|
FE
|
A:HEC603
|
0.0
|
22.3
|
1.0
|
|
NE2
|
A:HIS80
|
1.8
|
21.5
|
1.0
|
|
NB
|
A:HEC603
|
1.9
|
19.8
|
1.0
|
|
NE2
|
A:HIS108
|
2.0
|
22.4
|
1.0
|
|
ND
|
A:HEC603
|
2.0
|
19.5
|
1.0
|
|
NA
|
A:HEC603
|
2.1
|
20.6
|
1.0
|
|
NC
|
A:HEC603
|
2.1
|
21.1
|
1.0
|
|
CE1
|
A:HIS80
|
2.6
|
29.1
|
1.0
|
|
CE1
|
A:HIS108
|
2.8
|
29.3
|
1.0
|
|
C4B
|
A:HEC603
|
2.9
|
23.3
|
1.0
|
|
C4D
|
A:HEC603
|
3.0
|
22.3
|
1.0
|
|
CD2
|
A:HIS80
|
3.0
|
25.0
|
1.0
|
|
C1B
|
A:HEC603
|
3.0
|
23.2
|
1.0
|
|
C1D
|
A:HEC603
|
3.0
|
19.9
|
1.0
|
|
C1A
|
A:HEC603
|
3.0
|
19.9
|
1.0
|
|
CD2
|
A:HIS108
|
3.0
|
26.4
|
1.0
|
|
C1C
|
A:HEC603
|
3.0
|
21.0
|
1.0
|
|
C4C
|
A:HEC603
|
3.1
|
21.4
|
1.0
|
|
C4A
|
A:HEC603
|
3.1
|
23.1
|
1.0
|
|
CHA
|
A:HEC603
|
3.3
|
22.2
|
1.0
|
|
CHC
|
A:HEC603
|
3.3
|
19.2
|
1.0
|
|
CHD
|
A:HEC603
|
3.4
|
23.8
|
1.0
|
|
CHB
|
A:HEC603
|
3.5
|
22.0
|
1.0
|
|
ND1
|
A:HIS80
|
3.8
|
28.5
|
1.0
|
|
ND1
|
A:HIS108
|
4.0
|
24.7
|
1.0
|
|
CG
|
A:HIS80
|
4.0
|
28.3
|
1.0
|
|
CG
|
A:HIS108
|
4.1
|
27.6
|
1.0
|
|
C3B
|
A:HEC603
|
4.2
|
23.7
|
1.0
|
|
C2B
|
A:HEC603
|
4.2
|
23.9
|
1.0
|
|
C3D
|
A:HEC603
|
4.2
|
23.8
|
1.0
|
|
C2D
|
A:HEC603
|
4.2
|
22.5
|
1.0
|
|
C2C
|
A:HEC603
|
4.3
|
22.2
|
1.0
|
|
C3A
|
A:HEC603
|
4.3
|
24.6
|
1.0
|
|
C3C
|
A:HEC603
|
4.3
|
22.7
|
1.0
|
|
C2A
|
A:HEC603
|
4.3
|
22.2
|
1.0
|
|
Iron binding site 4 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 4 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:24.5
occ:1.00
|
FE
|
A:HEC604
|
0.0
|
24.5
|
1.0
|
|
NE2
|
A:HIS151
|
1.9
|
26.1
|
1.0
|
|
ND
|
A:HEC604
|
1.9
|
26.8
|
1.0
|
|
NE2
|
A:HIS128
|
2.0
|
31.3
|
1.0
|
|
NC
|
A:HEC604
|
2.0
|
26.5
|
1.0
|
|
NB
|
A:HEC604
|
2.0
|
25.4
|
1.0
|
|
NA
|
A:HEC604
|
2.1
|
30.8
|
1.0
|
|
CE1
|
A:HIS151
|
2.7
|
27.6
|
1.0
|
|
CE1
|
A:HIS128
|
2.9
|
31.1
|
1.0
|
|
C1D
|
A:HEC604
|
2.9
|
24.8
|
1.0
|
|
C4C
|
A:HEC604
|
3.0
|
27.1
|
1.0
|
|
C4D
|
A:HEC604
|
3.0
|
26.9
|
1.0
|
|
C1B
|
A:HEC604
|
3.0
|
29.1
|
1.0
|
|
C1C
|
A:HEC604
|
3.0
|
26.6
|
1.0
|
|
CD2
|
A:HIS128
|
3.0
|
30.3
|
1.0
|
|
CD2
|
A:HIS151
|
3.0
|
29.8
|
1.0
|
|
C4B
|
A:HEC604
|
3.0
|
27.8
|
1.0
|
|
C1A
|
A:HEC604
|
3.1
|
31.3
|
1.0
|
|
C4A
|
A:HEC604
|
3.1
|
30.4
|
1.0
|
|
CHD
|
A:HEC604
|
3.3
|
25.5
|
1.0
|
|
CHA
|
A:HEC604
|
3.4
|
30.7
|
1.0
|
|
CHB
|
A:HEC604
|
3.4
|
31.3
|
1.0
|
|
CHC
|
A:HEC604
|
3.4
|
29.2
|
1.0
|
|
ND1
|
A:HIS151
|
3.9
|
25.2
|
1.0
|
|
ND1
|
A:HIS128
|
4.0
|
26.2
|
1.0
|
|
CG
|
A:HIS151
|
4.1
|
27.1
|
1.0
|
|
CG
|
A:HIS128
|
4.1
|
28.4
|
1.0
|
|
C2D
|
A:HEC604
|
4.2
|
25.7
|
1.0
|
|
C3D
|
A:HEC604
|
4.2
|
25.7
|
1.0
|
|
C3C
|
A:HEC604
|
4.2
|
27.0
|
1.0
|
|
C2C
|
A:HEC604
|
4.2
|
29.1
|
1.0
|
|
C2B
|
A:HEC604
|
4.2
|
30.1
|
1.0
|
|
C3B
|
A:HEC604
|
4.3
|
26.5
|
1.0
|
|
C2A
|
A:HEC604
|
4.3
|
32.1
|
1.0
|
|
C3A
|
A:HEC604
|
4.3
|
30.1
|
1.0
|
|
Iron binding site 5 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 5 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe605
b:25.0
occ:1.00
|
FE
|
A:HEC605
|
0.0
|
25.0
|
1.0
|
|
NE2
|
A:HIS152
|
1.8
|
26.4
|
1.0
|
|
NE2
|
A:HIS175
|
1.9
|
27.0
|
1.0
|
|
NA
|
A:HEC605
|
1.9
|
25.6
|
1.0
|
|
NC
|
A:HEC605
|
2.0
|
23.9
|
1.0
|
|
NB
|
A:HEC605
|
2.1
|
29.4
|
1.0
|
|
ND
|
A:HEC605
|
2.1
|
26.0
|
1.0
|
|
CE1
|
A:HIS152
|
2.6
|
28.6
|
1.0
|
|
CE1
|
A:HIS175
|
2.7
|
29.2
|
1.0
|
|
C4A
|
A:HEC605
|
2.8
|
27.5
|
1.0
|
|
CD2
|
A:HIS152
|
2.9
|
26.8
|
1.0
|
|
C1B
|
A:HEC605
|
2.9
|
27.8
|
1.0
|
|
C1A
|
A:HEC605
|
3.0
|
27.3
|
1.0
|
|
CD2
|
A:HIS175
|
3.0
|
28.9
|
1.0
|
|
C4C
|
A:HEC605
|
3.0
|
27.7
|
1.0
|
|
C1D
|
A:HEC605
|
3.1
|
25.4
|
1.0
|
|
C1C
|
A:HEC605
|
3.2
|
26.7
|
1.0
|
|
C4D
|
A:HEC605
|
3.2
|
28.2
|
1.0
|
|
C4B
|
A:HEC605
|
3.2
|
30.9
|
1.0
|
|
CHB
|
A:HEC605
|
3.2
|
27.1
|
1.0
|
|
CHD
|
A:HEC605
|
3.4
|
22.0
|
1.0
|
|
CHA
|
A:HEC605
|
3.5
|
28.9
|
1.0
|
|
CHC
|
A:HEC605
|
3.6
|
32.2
|
1.0
|
|
ND1
|
A:HIS152
|
3.8
|
25.6
|
1.0
|
|
ND1
|
A:HIS175
|
3.9
|
27.6
|
1.0
|
|
CG
|
A:HIS152
|
4.0
|
27.7
|
1.0
|
|
CG
|
A:HIS175
|
4.1
|
31.9
|
1.0
|
|
C3A
|
A:HEC605
|
4.1
|
27.7
|
1.0
|
|
C2A
|
A:HEC605
|
4.2
|
28.4
|
1.0
|
|
C2B
|
A:HEC605
|
4.2
|
34.6
|
1.0
|
|
C3C
|
A:HEC605
|
4.3
|
27.6
|
1.0
|
|
C3B
|
A:HEC605
|
4.3
|
34.4
|
1.0
|
|
C2C
|
A:HEC605
|
4.4
|
20.1
|
1.0
|
|
C2D
|
A:HEC605
|
4.4
|
27.5
|
1.0
|
|
C3D
|
A:HEC605
|
4.4
|
28.3
|
1.0
|
|
Iron binding site 6 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 6 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe606
b:27.8
occ:1.00
|
FE
|
A:HEC606
|
0.0
|
27.8
|
1.0
|
|
NB
|
A:HEC606
|
1.9
|
24.4
|
1.0
|
|
NA
|
A:HEC606
|
1.9
|
23.9
|
1.0
|
|
NC
|
A:HEC606
|
2.0
|
22.8
|
1.0
|
|
ND
|
A:HEC606
|
2.0
|
25.7
|
1.0
|
|
NE2
|
A:HIS131
|
2.0
|
29.2
|
1.0
|
|
NE2
|
A:HIS198
|
2.1
|
25.5
|
1.0
|
|
C4B
|
A:HEC606
|
2.9
|
22.2
|
1.0
|
|
C1B
|
A:HEC606
|
2.9
|
25.7
|
1.0
|
|
C1A
|
A:HEC606
|
3.0
|
23.8
|
1.0
|
|
CD2
|
A:HIS131
|
3.0
|
25.8
|
1.0
|
|
C1C
|
A:HEC606
|
3.0
|
19.6
|
1.0
|
|
C4A
|
A:HEC606
|
3.0
|
24.7
|
1.0
|
|
CD2
|
A:HIS198
|
3.0
|
27.1
|
1.0
|
|
C4D
|
A:HEC606
|
3.0
|
25.4
|
1.0
|
|
C4C
|
A:HEC606
|
3.0
|
24.9
|
1.0
|
|
C1D
|
A:HEC606
|
3.1
|
25.6
|
1.0
|
|
CE1
|
A:HIS131
|
3.1
|
29.5
|
1.0
|
|
CE1
|
A:HIS198
|
3.1
|
24.9
|
1.0
|
|
CHC
|
A:HEC606
|
3.3
|
19.3
|
1.0
|
|
CHB
|
A:HEC606
|
3.4
|
16.9
|
1.0
|
|
CHA
|
A:HEC606
|
3.4
|
24.4
|
1.0
|
|
CHD
|
A:HEC606
|
3.4
|
24.0
|
1.0
|
|
C3B
|
A:HEC606
|
4.1
|
21.8
|
1.0
|
|
CG
|
A:HIS131
|
4.1
|
28.0
|
1.0
|
|
C2B
|
A:HEC606
|
4.1
|
21.6
|
1.0
|
|
ND1
|
A:HIS131
|
4.1
|
25.0
|
1.0
|
|
C2A
|
A:HEC606
|
4.2
|
24.4
|
1.0
|
|
CG
|
A:HIS198
|
4.2
|
27.2
|
1.0
|
|
C3A
|
A:HEC606
|
4.2
|
22.2
|
1.0
|
|
C2C
|
A:HEC606
|
4.2
|
21.6
|
1.0
|
|
ND1
|
A:HIS198
|
4.2
|
24.0
|
1.0
|
|
C3C
|
A:HEC606
|
4.2
|
23.6
|
1.0
|
|
C3D
|
A:HEC606
|
4.3
|
26.8
|
1.0
|
|
C2D
|
A:HEC606
|
4.3
|
24.8
|
1.0
|
|
CA
|
A:GLY209
|
4.4
|
27.6
|
1.0
|
|
CZ
|
A:PHE123
|
4.7
|
26.9
|
1.0
|
|
N
|
A:GLY209
|
4.8
|
29.4
|
1.0
|
|
Iron binding site 7 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 7 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe607
b:29.1
occ:1.00
|
FE
|
A:HEC607
|
0.0
|
29.1
|
1.0
|
|
NE2
|
A:HIS191
|
1.9
|
30.3
|
1.0
|
|
NC
|
A:HEC607
|
1.9
|
24.6
|
1.0
|
|
NA
|
A:HEC607
|
1.9
|
30.2
|
1.0
|
|
NE2
|
A:HIS217
|
1.9
|
29.2
|
1.0
|
|
ND
|
A:HEC607
|
2.0
|
26.5
|
1.0
|
|
NB
|
A:HEC607
|
2.0
|
29.8
|
1.0
|
|
CE1
|
A:HIS217
|
2.8
|
25.1
|
1.0
|
|
CE1
|
A:HIS191
|
2.8
|
23.7
|
1.0
|
|
C1C
|
A:HEC607
|
2.9
|
25.9
|
1.0
|
|
C4A
|
A:HEC607
|
3.0
|
31.8
|
1.0
|
|
C4C
|
A:HEC607
|
3.0
|
26.4
|
1.0
|
|
CD2
|
A:HIS191
|
3.0
|
27.2
|
1.0
|
|
C1A
|
A:HEC607
|
3.0
|
27.9
|
1.0
|
|
C4B
|
A:HEC607
|
3.0
|
27.0
|
1.0
|
|
C4D
|
A:HEC607
|
3.0
|
29.3
|
1.0
|
|
C1D
|
A:HEC607
|
3.0
|
28.6
|
1.0
|
|
CD2
|
A:HIS217
|
3.1
|
29.7
|
1.0
|
|
C1B
|
A:HEC607
|
3.1
|
28.0
|
1.0
|
|
CHC
|
A:HEC607
|
3.3
|
25.9
|
1.0
|
|
CHB
|
A:HEC607
|
3.4
|
31.7
|
1.0
|
|
CHA
|
A:HEC607
|
3.4
|
25.4
|
1.0
|
|
CHD
|
A:HEC607
|
3.4
|
26.1
|
1.0
|
|
ND1
|
A:HIS217
|
3.9
|
28.4
|
1.0
|
|
ND1
|
A:HIS191
|
4.0
|
18.3
|
1.0
|
|
CG
|
A:HIS191
|
4.1
|
21.5
|
1.0
|
|
CG
|
A:HIS217
|
4.1
|
28.1
|
1.0
|
|
C2C
|
A:HEC607
|
4.1
|
25.5
|
1.0
|
|
C3A
|
A:HEC607
|
4.2
|
27.7
|
1.0
|
|
C3C
|
A:HEC607
|
4.2
|
25.0
|
1.0
|
|
C2A
|
A:HEC607
|
4.2
|
28.7
|
1.0
|
|
C3B
|
A:HEC607
|
4.2
|
22.5
|
1.0
|
|
C2D
|
A:HEC607
|
4.3
|
24.5
|
1.0
|
|
C2B
|
A:HEC607
|
4.3
|
26.6
|
1.0
|
|
C3D
|
A:HEC607
|
4.3
|
28.6
|
1.0
|
|
NE1
|
A:TRP118
|
4.7
|
34.9
|
1.0
|
|
Iron binding site 8 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 8 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:22.9
occ:1.00
|
FE
|
A:HEC608
|
0.0
|
22.9
|
1.0
|
|
NC
|
A:HEC608
|
1.9
|
23.6
|
1.0
|
|
NE2
|
A:HIS267
|
1.9
|
22.4
|
1.0
|
|
NA
|
A:HEC608
|
2.0
|
21.7
|
1.0
|
|
NB
|
A:HEC608
|
2.0
|
21.1
|
1.0
|
|
ND
|
A:HEC608
|
2.0
|
19.5
|
1.0
|
|
NE2
|
A:HIS281
|
2.0
|
23.4
|
1.0
|
|
CE1
|
A:HIS281
|
2.6
|
25.7
|
1.0
|
|
CE1
|
A:HIS267
|
2.8
|
26.9
|
1.0
|
|
C1C
|
A:HEC608
|
2.9
|
20.5
|
1.0
|
|
C4B
|
A:HEC608
|
2.9
|
20.1
|
1.0
|
|
C1A
|
A:HEC608
|
2.9
|
23.1
|
1.0
|
|
C4D
|
A:HEC608
|
3.0
|
21.4
|
1.0
|
|
CD2
|
A:HIS267
|
3.0
|
23.7
|
1.0
|
|
C4A
|
A:HEC608
|
3.0
|
23.8
|
1.0
|
|
C4C
|
A:HEC608
|
3.1
|
21.1
|
1.0
|
|
C1D
|
A:HEC608
|
3.1
|
18.9
|
1.0
|
|
C1B
|
A:HEC608
|
3.1
|
20.3
|
1.0
|
|
CHC
|
A:HEC608
|
3.2
|
22.1
|
1.0
|
|
CHA
|
A:HEC608
|
3.3
|
22.9
|
1.0
|
|
CD2
|
A:HIS281
|
3.3
|
22.4
|
1.0
|
|
CHD
|
A:HEC608
|
3.5
|
14.2
|
1.0
|
|
CHB
|
A:HEC608
|
3.5
|
18.5
|
1.0
|
|
ND1
|
A:HIS281
|
3.8
|
20.0
|
1.0
|
|
ND1
|
A:HIS267
|
4.0
|
27.5
|
1.0
|
|
CG
|
A:HIS267
|
4.1
|
23.8
|
1.0
|
|
C2A
|
A:HEC608
|
4.1
|
22.4
|
1.0
|
|
C2C
|
A:HEC608
|
4.1
|
23.7
|
1.0
|
|
C3A
|
A:HEC608
|
4.2
|
21.5
|
1.0
|
|
C3B
|
A:HEC608
|
4.2
|
16.5
|
1.0
|
|
CG
|
A:HIS281
|
4.2
|
21.3
|
1.0
|
|
C2B
|
A:HEC608
|
4.2
|
14.7
|
1.0
|
|
C3C
|
A:HEC608
|
4.3
|
22.0
|
1.0
|
|
C3D
|
A:HEC608
|
4.3
|
17.5
|
1.0
|
|
C2D
|
A:HEC608
|
4.3
|
19.2
|
1.0
|
|
Iron binding site 9 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 9 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe609
b:24.4
occ:1.00
|
FE
|
A:HEC609
|
0.0
|
24.4
|
1.0
|
|
NE2
|
A:HIS292
|
1.8
|
24.5
|
1.0
|
|
ND
|
A:HEC609
|
2.0
|
27.1
|
1.0
|
|
NA
|
A:HEC609
|
2.0
|
25.8
|
1.0
|
|
NC
|
A:HEC609
|
2.0
|
23.3
|
1.0
|
|
CE1
|
A:HIS282
|
2.1
|
29.1
|
1.0
|
|
NB
|
A:HEC609
|
2.1
|
23.0
|
1.0
|
|
NE2
|
A:HIS282
|
2.3
|
29.1
|
1.0
|
|
CE1
|
A:HIS292
|
2.6
|
28.4
|
1.0
|
|
CD2
|
A:HIS292
|
2.9
|
29.3
|
1.0
|
|
C1D
|
A:HEC609
|
2.9
|
28.2
|
1.0
|
|
C4C
|
A:HEC609
|
3.0
|
26.2
|
1.0
|
|
C4A
|
A:HEC609
|
3.0
|
24.4
|
1.0
|
|
C1A
|
A:HEC609
|
3.0
|
28.5
|
1.0
|
|
C4D
|
A:HEC609
|
3.0
|
29.0
|
1.0
|
|
C1B
|
A:HEC609
|
3.0
|
22.1
|
1.0
|
|
C1C
|
A:HEC609
|
3.1
|
27.8
|
1.0
|
|
C4B
|
A:HEC609
|
3.3
|
21.2
|
1.0
|
|
CHD
|
A:HEC609
|
3.3
|
27.9
|
1.0
|
|
CHB
|
A:HEC609
|
3.4
|
19.8
|
1.0
|
|
ND1
|
A:HIS282
|
3.4
|
26.2
|
1.0
|
|
CHA
|
A:HEC609
|
3.4
|
30.0
|
1.0
|
|
CHC
|
A:HEC609
|
3.7
|
22.8
|
1.0
|
|
CD2
|
A:HIS282
|
3.7
|
24.3
|
1.0
|
|
ND1
|
A:HIS292
|
3.8
|
25.0
|
1.0
|
|
CG
|
A:HIS292
|
4.0
|
27.9
|
1.0
|
|
C2D
|
A:HEC609
|
4.2
|
31.5
|
1.0
|
|
CG
|
A:HIS282
|
4.2
|
28.1
|
1.0
|
|
C3D
|
A:HEC609
|
4.2
|
31.2
|
1.0
|
|
C3A
|
A:HEC609
|
4.2
|
26.9
|
1.0
|
|
C2A
|
A:HEC609
|
4.2
|
32.6
|
1.0
|
|
C3C
|
A:HEC609
|
4.3
|
21.8
|
1.0
|
|
C2C
|
A:HEC609
|
4.3
|
21.4
|
1.0
|
|
C2B
|
A:HEC609
|
4.3
|
21.7
|
1.0
|
|
C3B
|
A:HEC609
|
4.4
|
21.6
|
1.0
|
|
NH1
|
A:ARG316
|
4.8
|
21.2
|
1.0
|
|
Iron binding site 10 out
of 16 in 1gws
Go back to
Iron Binding Sites List in 1gws
Iron binding site 10 out
of 16 in the Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Hexadecaheme High Molecular Weight Cytochrome Hmc From Desulfovibrio Vulgaris Hildenborough within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe610
b:22.1
occ:1.00
|
FE
|
A:HEC610
|
0.0
|
22.1
|
1.0
|
|
NE2
|
A:HIS270
|
1.9
|
25.0
|
1.0
|
|
NA
|
A:HEC610
|
2.0
|
18.6
|
1.0
|
|
NB
|
A:HEC610
|
2.0
|
20.0
|
1.0
|
|
NE2
|
A:HIS322
|
2.1
|
27.3
|
1.0
|
|
NC
|
A:HEC610
|
2.1
|
20.6
|
1.0
|
|
ND
|
A:HEC610
|
2.2
|
18.4
|
1.0
|
|
CE1
|
A:HIS270
|
2.8
|
26.0
|
1.0
|
|
CE1
|
A:HIS322
|
2.9
|
23.5
|
1.0
|
|
C4A
|
A:HEC610
|
2.9
|
22.4
|
1.0
|
|
C1B
|
A:HEC610
|
2.9
|
19.4
|
1.0
|
|
CD2
|
A:HIS270
|
3.0
|
24.6
|
1.0
|
|
C1A
|
A:HEC610
|
3.0
|
21.7
|
1.0
|
|
C4C
|
A:HEC610
|
3.1
|
25.4
|
1.0
|
|
C1D
|
A:HEC610
|
3.1
|
20.8
|
1.0
|
|
C4D
|
A:HEC610
|
3.1
|
20.3
|
1.0
|
|
C4B
|
A:HEC610
|
3.2
|
25.1
|
1.0
|
|
C1C
|
A:HEC610
|
3.2
|
24.0
|
1.0
|
|
CD2
|
A:HIS322
|
3.2
|
27.8
|
1.0
|
|
CHB
|
A:HEC610
|
3.3
|
13.6
|
1.0
|
|
CHD
|
A:HEC610
|
3.4
|
21.1
|
1.0
|
|
CHA
|
A:HEC610
|
3.5
|
18.7
|
1.0
|
|
CHC
|
A:HEC610
|
3.6
|
27.2
|
1.0
|
|
ND1
|
A:HIS270
|
4.0
|
26.9
|
1.0
|
|
ND1
|
A:HIS322
|
4.1
|
21.3
|
1.0
|
|
CG
|
A:HIS270
|
4.1
|
21.2
|
1.0
|
|
C3A
|
A:HEC610
|
4.2
|
18.7
|
1.0
|
|
C2A
|
A:HEC610
|
4.2
|
24.2
|
1.0
|
|
C2B
|
A:HEC610
|
4.2
|
22.8
|
1.0
|
|
CG
|
A:HIS322
|
4.3
|
24.4
|
1.0
|
|
C3B
|
A:HEC610
|
4.3
|
22.8
|
1.0
|
|
C2D
|
A:HEC610
|
4.4
|
26.0
|
1.0
|
|
C3D
|
A:HEC610
|
4.4
|
24.2
|
1.0
|
|
C3C
|
A:HEC610
|
4.4
|
21.2
|
1.0
|
|
C2C
|
A:HEC610
|
4.4
|
22.9
|
1.0
|
|
CD1
|
A:LEU434
|
4.6
|
25.7
|
1.0
|
|
CE1
|
A:PHE265
|
4.8
|
25.4
|
1.0
|
|
Reference:
M.Czjzek,
L.Elantak,
V.Zamboni,
X.Morelli,
A.Dolla,
F.Guerlesquin,
M.Bruschi.
The Crystal Structure of the Hexadaca-Heme Cytochrome Hmc and A Structural Model of Its Complex with Cytochrome C3 Structure V. 10 1677 2002.
ISSN: ISSN 0969-2126
PubMed: 12467575
DOI: 10.1016/S0969-2126(02)00909-7
Page generated: Sun Dec 13 14:16:21 2020
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