Iron in PDB 1h29: Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Protein crystallography data
The structure of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer, PDB code: 1h29
was solved by
P.M.Matias,
A.V.Coelho,
F.M.A.Valente,
D.Placido,
J.Legall,
A.V.Xavier,
I.A.C.Pereira,
M.A.Carrondo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.51
|
Space group
|
P 62
|
Cell size a, b, c (Å), α, β, γ (°)
|
220.390,
220.390,
102.640,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.2 /
25.8
|
Iron Binding Sites:
Iron binding site 1 out
of 64 in 1h29
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Iron Binding Sites List in 1h29
Iron binding site 1 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1101
b:28.7
occ:1.00
|
FE
|
A:HEC1101
|
0.0
|
28.7
|
1.0
|
NE2
|
A:HIS66
|
2.0
|
24.3
|
1.0
|
NE2
|
A:HIS84
|
2.0
|
30.4
|
1.0
|
NC
|
A:HEC1101
|
2.0
|
29.8
|
1.0
|
NA
|
A:HEC1101
|
2.0
|
26.7
|
1.0
|
NB
|
A:HEC1101
|
2.0
|
29.2
|
1.0
|
ND
|
A:HEC1101
|
2.1
|
28.8
|
1.0
|
CE1
|
A:HIS66
|
2.8
|
23.2
|
1.0
|
CE1
|
A:HIS84
|
2.8
|
28.9
|
1.0
|
C4C
|
A:HEC1101
|
3.0
|
30.2
|
1.0
|
C4A
|
A:HEC1101
|
3.0
|
27.1
|
1.0
|
C1C
|
A:HEC1101
|
3.0
|
31.3
|
1.0
|
C1B
|
A:HEC1101
|
3.0
|
27.0
|
1.0
|
CD2
|
A:HIS66
|
3.0
|
25.6
|
1.0
|
C1A
|
A:HEC1101
|
3.1
|
27.7
|
1.0
|
CD2
|
A:HIS84
|
3.1
|
30.3
|
1.0
|
C1D
|
A:HEC1101
|
3.1
|
28.7
|
1.0
|
C4B
|
A:HEC1101
|
3.1
|
28.9
|
1.0
|
C4D
|
A:HEC1101
|
3.1
|
28.0
|
1.0
|
CHB
|
A:HEC1101
|
3.4
|
26.2
|
1.0
|
CHD
|
A:HEC1101
|
3.4
|
30.3
|
1.0
|
CHA
|
A:HEC1101
|
3.4
|
28.7
|
1.0
|
CHC
|
A:HEC1101
|
3.5
|
30.4
|
1.0
|
ND1
|
A:HIS66
|
4.0
|
26.0
|
1.0
|
ND1
|
A:HIS84
|
4.0
|
28.8
|
1.0
|
CG
|
A:HIS66
|
4.1
|
26.4
|
1.0
|
CG
|
A:HIS84
|
4.2
|
29.3
|
1.0
|
C2C
|
A:HEC1101
|
4.3
|
30.8
|
1.0
|
C3C
|
A:HEC1101
|
4.3
|
31.0
|
1.0
|
C3A
|
A:HEC1101
|
4.3
|
27.4
|
1.0
|
C2B
|
A:HEC1101
|
4.3
|
27.0
|
1.0
|
C2A
|
A:HEC1101
|
4.3
|
27.2
|
1.0
|
C3B
|
A:HEC1101
|
4.3
|
27.8
|
1.0
|
C2D
|
A:HEC1101
|
4.3
|
25.7
|
1.0
|
C3D
|
A:HEC1101
|
4.4
|
28.5
|
1.0
|
|
Iron binding site 2 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 2 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1102
b:28.6
occ:1.00
|
FE
|
A:HEC1102
|
0.0
|
28.6
|
1.0
|
NE2
|
A:HIS69
|
1.9
|
27.6
|
1.0
|
NB
|
A:HEC1102
|
2.0
|
27.5
|
1.0
|
NC
|
A:HEC1102
|
2.0
|
26.2
|
1.0
|
NE2
|
A:HIS118
|
2.0
|
29.7
|
1.0
|
ND
|
A:HEC1102
|
2.1
|
27.1
|
1.0
|
NA
|
A:HEC1102
|
2.1
|
28.4
|
1.0
|
CE1
|
A:HIS69
|
2.9
|
27.1
|
1.0
|
CE1
|
A:HIS118
|
2.9
|
30.9
|
1.0
|
CD2
|
A:HIS69
|
3.0
|
27.8
|
1.0
|
C4B
|
A:HEC1102
|
3.0
|
28.0
|
1.0
|
C1C
|
A:HEC1102
|
3.0
|
26.1
|
1.0
|
C1B
|
A:HEC1102
|
3.0
|
28.4
|
1.0
|
C4C
|
A:HEC1102
|
3.1
|
26.0
|
1.0
|
C1D
|
A:HEC1102
|
3.1
|
26.4
|
1.0
|
C4D
|
A:HEC1102
|
3.1
|
27.3
|
1.0
|
C4A
|
A:HEC1102
|
3.1
|
28.7
|
1.0
|
C1A
|
A:HEC1102
|
3.1
|
29.2
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
29.8
|
1.0
|
CHC
|
A:HEC1102
|
3.4
|
27.3
|
1.0
|
CHD
|
A:HEC1102
|
3.4
|
27.1
|
1.0
|
CHB
|
A:HEC1102
|
3.4
|
31.0
|
1.0
|
CHA
|
A:HEC1102
|
3.5
|
27.9
|
1.0
|
ND1
|
A:HIS69
|
4.0
|
27.8
|
1.0
|
ND1
|
A:HIS118
|
4.1
|
29.2
|
1.0
|
CG
|
A:HIS69
|
4.1
|
28.6
|
1.0
|
CG
|
A:HIS118
|
4.2
|
29.4
|
1.0
|
C2B
|
A:HEC1102
|
4.2
|
28.1
|
1.0
|
C3B
|
A:HEC1102
|
4.2
|
27.6
|
1.0
|
C2C
|
A:HEC1102
|
4.2
|
27.2
|
1.0
|
C3C
|
A:HEC1102
|
4.3
|
26.6
|
1.0
|
C3D
|
A:HEC1102
|
4.3
|
27.6
|
1.0
|
C2D
|
A:HEC1102
|
4.3
|
27.6
|
1.0
|
C2A
|
A:HEC1102
|
4.4
|
29.8
|
1.0
|
C3A
|
A:HEC1102
|
4.4
|
29.2
|
1.0
|
CE1
|
A:PHE64
|
4.6
|
22.8
|
1.0
|
CA
|
A:GLY129
|
4.8
|
28.4
|
1.0
|
|
Iron binding site 3 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 3 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1103
b:27.9
occ:1.00
|
FE
|
A:HEC1103
|
0.0
|
27.9
|
1.0
|
NE2
|
A:HIS111
|
2.0
|
26.9
|
1.0
|
NE2
|
A:HIS139
|
2.0
|
27.3
|
1.0
|
ND
|
A:HEC1103
|
2.0
|
26.4
|
1.0
|
NA
|
A:HEC1103
|
2.0
|
26.9
|
1.0
|
NB
|
A:HEC1103
|
2.0
|
24.2
|
1.0
|
NC
|
A:HEC1103
|
2.1
|
27.0
|
1.0
|
CE1
|
A:HIS139
|
2.7
|
26.1
|
1.0
|
CE1
|
A:HIS111
|
2.8
|
28.6
|
1.0
|
C1A
|
A:HEC1103
|
3.0
|
27.4
|
1.0
|
C4D
|
A:HEC1103
|
3.0
|
27.0
|
1.0
|
C1D
|
A:HEC1103
|
3.0
|
28.6
|
1.0
|
C1B
|
A:HEC1103
|
3.1
|
23.3
|
1.0
|
C4C
|
A:HEC1103
|
3.1
|
28.5
|
1.0
|
C1C
|
A:HEC1103
|
3.1
|
27.1
|
1.0
|
C4A
|
A:HEC1103
|
3.1
|
26.7
|
1.0
|
C4B
|
A:HEC1103
|
3.1
|
26.8
|
1.0
|
CD2
|
A:HIS111
|
3.1
|
26.4
|
1.0
|
CD2
|
A:HIS139
|
3.2
|
23.9
|
1.0
|
CHA
|
A:HEC1103
|
3.4
|
27.8
|
1.0
|
CHD
|
A:HEC1103
|
3.4
|
28.8
|
1.0
|
CHB
|
A:HEC1103
|
3.4
|
26.4
|
1.0
|
CHC
|
A:HEC1103
|
3.4
|
27.4
|
1.0
|
ND1
|
A:HIS139
|
4.0
|
22.9
|
1.0
|
ND1
|
A:HIS111
|
4.0
|
27.9
|
1.0
|
CG
|
A:HIS111
|
4.1
|
29.1
|
1.0
|
CG
|
A:HIS139
|
4.2
|
25.5
|
1.0
|
C2A
|
A:HEC1103
|
4.2
|
25.8
|
1.0
|
C2D
|
A:HEC1103
|
4.3
|
28.4
|
1.0
|
C3D
|
A:HEC1103
|
4.3
|
29.4
|
1.0
|
C3A
|
A:HEC1103
|
4.3
|
25.9
|
1.0
|
C2B
|
A:HEC1103
|
4.3
|
22.6
|
1.0
|
C2C
|
A:HEC1103
|
4.3
|
29.3
|
1.0
|
C3B
|
A:HEC1103
|
4.3
|
22.8
|
1.0
|
C3C
|
A:HEC1103
|
4.3
|
28.3
|
1.0
|
|
Iron binding site 4 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 4 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1104
b:27.2
occ:1.00
|
FE
|
A:HEC1104
|
0.0
|
27.2
|
1.0
|
NA
|
A:HEC1104
|
2.0
|
23.4
|
1.0
|
NC
|
A:HEC1104
|
2.0
|
26.9
|
1.0
|
NE2
|
A:HIS159
|
2.0
|
29.9
|
1.0
|
NE2
|
A:HIS182
|
2.0
|
27.6
|
1.0
|
ND
|
A:HEC1104
|
2.1
|
27.1
|
1.0
|
NB
|
A:HEC1104
|
2.1
|
25.5
|
1.0
|
CE1
|
A:HIS159
|
2.9
|
26.8
|
1.0
|
C4C
|
A:HEC1104
|
3.0
|
28.0
|
1.0
|
C4A
|
A:HEC1104
|
3.0
|
24.8
|
1.0
|
CD2
|
A:HIS182
|
3.0
|
28.0
|
1.0
|
C1D
|
A:HEC1104
|
3.0
|
28.1
|
1.0
|
C1A
|
A:HEC1104
|
3.0
|
25.5
|
1.0
|
CE1
|
A:HIS182
|
3.0
|
27.5
|
1.0
|
C1C
|
A:HEC1104
|
3.0
|
27.0
|
1.0
|
CD2
|
A:HIS159
|
3.1
|
30.5
|
1.0
|
C4B
|
A:HEC1104
|
3.1
|
26.2
|
1.0
|
C1B
|
A:HEC1104
|
3.1
|
24.1
|
1.0
|
C4D
|
A:HEC1104
|
3.1
|
28.0
|
1.0
|
CHD
|
A:HEC1104
|
3.3
|
28.2
|
1.0
|
CHB
|
A:HEC1104
|
3.4
|
25.2
|
1.0
|
CHC
|
A:HEC1104
|
3.4
|
27.2
|
1.0
|
CHA
|
A:HEC1104
|
3.5
|
28.0
|
1.0
|
ND1
|
A:HIS159
|
4.1
|
27.9
|
1.0
|
ND1
|
A:HIS182
|
4.1
|
26.7
|
1.0
|
CG
|
A:HIS182
|
4.1
|
27.5
|
1.0
|
CG
|
A:HIS159
|
4.2
|
28.2
|
1.0
|
C3C
|
A:HEC1104
|
4.2
|
28.6
|
1.0
|
C3A
|
A:HEC1104
|
4.2
|
23.4
|
1.0
|
C2A
|
A:HEC1104
|
4.2
|
25.0
|
1.0
|
C2C
|
A:HEC1104
|
4.3
|
28.8
|
1.0
|
C2D
|
A:HEC1104
|
4.3
|
29.5
|
1.0
|
C3B
|
A:HEC1104
|
4.3
|
25.3
|
1.0
|
C2B
|
A:HEC1104
|
4.3
|
23.4
|
1.0
|
C3D
|
A:HEC1104
|
4.3
|
28.9
|
1.0
|
|
Iron binding site 5 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 5 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1105
b:28.9
occ:1.00
|
FE
|
A:HEC1105
|
0.0
|
28.9
|
1.0
|
NB
|
A:HEC1105
|
2.0
|
26.7
|
1.0
|
NE2
|
A:HIS183
|
2.0
|
31.0
|
1.0
|
NC
|
A:HEC1105
|
2.0
|
26.8
|
1.0
|
NA
|
A:HEC1105
|
2.0
|
27.9
|
1.0
|
NE2
|
A:HIS206
|
2.0
|
26.8
|
1.0
|
ND
|
A:HEC1105
|
2.1
|
25.3
|
1.0
|
CD2
|
A:HIS183
|
2.9
|
29.4
|
1.0
|
C1B
|
A:HEC1105
|
3.0
|
26.7
|
1.0
|
CE1
|
A:HIS206
|
3.0
|
27.3
|
1.0
|
C4A
|
A:HEC1105
|
3.0
|
28.4
|
1.0
|
C4C
|
A:HEC1105
|
3.0
|
28.2
|
1.0
|
CE1
|
A:HIS183
|
3.0
|
30.5
|
1.0
|
C4B
|
A:HEC1105
|
3.0
|
28.1
|
1.0
|
CD2
|
A:HIS206
|
3.0
|
26.1
|
1.0
|
C1C
|
A:HEC1105
|
3.1
|
27.6
|
1.0
|
C1D
|
A:HEC1105
|
3.1
|
26.1
|
1.0
|
C1A
|
A:HEC1105
|
3.1
|
29.3
|
1.0
|
C4D
|
A:HEC1105
|
3.1
|
26.8
|
1.0
|
CHB
|
A:HEC1105
|
3.3
|
27.3
|
1.0
|
CHD
|
A:HEC1105
|
3.4
|
26.0
|
1.0
|
CHC
|
A:HEC1105
|
3.4
|
28.2
|
1.0
|
CHA
|
A:HEC1105
|
3.5
|
28.4
|
1.0
|
CG
|
A:HIS183
|
4.1
|
29.1
|
1.0
|
ND1
|
A:HIS183
|
4.1
|
30.3
|
1.0
|
ND1
|
A:HIS206
|
4.1
|
27.6
|
1.0
|
CG
|
A:HIS206
|
4.2
|
27.6
|
1.0
|
C2B
|
A:HEC1105
|
4.2
|
27.2
|
1.0
|
C3B
|
A:HEC1105
|
4.2
|
27.1
|
1.0
|
C3A
|
A:HEC1105
|
4.2
|
29.5
|
1.0
|
C3C
|
A:HEC1105
|
4.3
|
26.8
|
1.0
|
C2C
|
A:HEC1105
|
4.3
|
26.4
|
1.0
|
C2A
|
A:HEC1105
|
4.3
|
30.7
|
1.0
|
C2D
|
A:HEC1105
|
4.3
|
26.1
|
1.0
|
C3D
|
A:HEC1105
|
4.4
|
26.7
|
1.0
|
|
Iron binding site 6 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 6 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1106
b:29.6
occ:1.00
|
FE
|
A:HEC1106
|
0.0
|
29.6
|
1.0
|
NE2
|
A:HIS162
|
2.0
|
29.5
|
1.0
|
NE2
|
A:HIS229
|
2.0
|
29.4
|
1.0
|
ND
|
A:HEC1106
|
2.0
|
28.2
|
1.0
|
NC
|
A:HEC1106
|
2.0
|
29.4
|
1.0
|
NA
|
A:HEC1106
|
2.0
|
30.3
|
1.0
|
NB
|
A:HEC1106
|
2.1
|
28.7
|
1.0
|
CE1
|
A:HIS162
|
2.9
|
27.7
|
1.0
|
CE1
|
A:HIS229
|
2.9
|
28.6
|
1.0
|
C1D
|
A:HEC1106
|
3.0
|
28.1
|
1.0
|
C4C
|
A:HEC1106
|
3.0
|
28.9
|
1.0
|
CD2
|
A:HIS229
|
3.0
|
29.3
|
1.0
|
CD2
|
A:HIS162
|
3.0
|
27.1
|
1.0
|
C4A
|
A:HEC1106
|
3.0
|
32.2
|
1.0
|
C4D
|
A:HEC1106
|
3.0
|
28.2
|
1.0
|
C1A
|
A:HEC1106
|
3.1
|
31.4
|
1.0
|
C1B
|
A:HEC1106
|
3.1
|
29.9
|
1.0
|
C1C
|
A:HEC1106
|
3.1
|
29.4
|
1.0
|
C4B
|
A:HEC1106
|
3.1
|
29.4
|
1.0
|
CHD
|
A:HEC1106
|
3.3
|
28.5
|
1.0
|
CHB
|
A:HEC1106
|
3.4
|
31.0
|
1.0
|
CHA
|
A:HEC1106
|
3.4
|
29.9
|
1.0
|
CHC
|
A:HEC1106
|
3.5
|
30.2
|
1.0
|
ND1
|
A:HIS162
|
4.0
|
26.1
|
1.0
|
ND1
|
A:HIS229
|
4.0
|
28.8
|
1.0
|
CG
|
A:HIS162
|
4.1
|
26.8
|
1.0
|
CG
|
A:HIS229
|
4.1
|
29.8
|
1.0
|
C2D
|
A:HEC1106
|
4.2
|
27.0
|
1.0
|
C3C
|
A:HEC1106
|
4.2
|
28.6
|
1.0
|
C3A
|
A:HEC1106
|
4.2
|
32.6
|
1.0
|
C3D
|
A:HEC1106
|
4.3
|
27.9
|
1.0
|
C2A
|
A:HEC1106
|
4.3
|
32.6
|
1.0
|
C2C
|
A:HEC1106
|
4.3
|
29.4
|
1.0
|
C2B
|
A:HEC1106
|
4.3
|
28.1
|
1.0
|
C3B
|
A:HEC1106
|
4.3
|
26.5
|
1.0
|
CA
|
A:GLY240
|
4.4
|
30.1
|
1.0
|
N
|
A:GLY240
|
4.7
|
30.9
|
1.0
|
CZ
|
A:PHE154
|
4.8
|
33.3
|
1.0
|
|
Iron binding site 7 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 7 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1107
b:25.7
occ:1.00
|
FE
|
A:HEC1107
|
0.0
|
25.7
|
1.0
|
ND
|
A:HEC1107
|
1.9
|
26.7
|
1.0
|
NB
|
A:HEC1107
|
2.0
|
25.6
|
1.0
|
NE2
|
A:HIS222
|
2.0
|
27.1
|
1.0
|
NE2
|
A:HIS248
|
2.0
|
27.9
|
1.0
|
NC
|
A:HEC1107
|
2.0
|
24.6
|
1.0
|
NA
|
A:HEC1107
|
2.0
|
26.8
|
1.0
|
CD2
|
A:HIS248
|
2.9
|
28.0
|
1.0
|
C1D
|
A:HEC1107
|
2.9
|
26.8
|
1.0
|
CE1
|
A:HIS222
|
2.9
|
29.6
|
1.0
|
C1B
|
A:HEC1107
|
3.0
|
26.6
|
1.0
|
C4D
|
A:HEC1107
|
3.0
|
25.5
|
1.0
|
C4C
|
A:HEC1107
|
3.0
|
26.3
|
1.0
|
C4B
|
A:HEC1107
|
3.0
|
25.4
|
1.0
|
C1A
|
A:HEC1107
|
3.0
|
25.8
|
1.0
|
CD2
|
A:HIS222
|
3.1
|
29.4
|
1.0
|
CE1
|
A:HIS248
|
3.1
|
26.2
|
1.0
|
C4A
|
A:HEC1107
|
3.1
|
27.1
|
1.0
|
C1C
|
A:HEC1107
|
3.1
|
23.7
|
1.0
|
CHD
|
A:HEC1107
|
3.3
|
27.0
|
1.0
|
CHA
|
A:HEC1107
|
3.4
|
24.9
|
1.0
|
CHB
|
A:HEC1107
|
3.4
|
28.7
|
1.0
|
CHC
|
A:HEC1107
|
3.5
|
25.2
|
1.0
|
ND1
|
A:HIS222
|
4.1
|
28.7
|
1.0
|
CG
|
A:HIS248
|
4.1
|
26.7
|
1.0
|
ND1
|
A:HIS248
|
4.1
|
23.4
|
1.0
|
CG
|
A:HIS222
|
4.2
|
30.2
|
1.0
|
C2D
|
A:HEC1107
|
4.2
|
25.2
|
1.0
|
C2B
|
A:HEC1107
|
4.2
|
26.3
|
1.0
|
C3D
|
A:HEC1107
|
4.2
|
24.4
|
1.0
|
C3B
|
A:HEC1107
|
4.2
|
24.7
|
1.0
|
C3C
|
A:HEC1107
|
4.3
|
26.1
|
1.0
|
C2A
|
A:HEC1107
|
4.3
|
28.7
|
1.0
|
C3A
|
A:HEC1107
|
4.3
|
27.6
|
1.0
|
C2C
|
A:HEC1107
|
4.3
|
24.8
|
1.0
|
NE1
|
A:TRP149
|
4.7
|
20.4
|
1.0
|
|
Iron binding site 8 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 8 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1108
b:22.9
occ:1.00
|
FE
|
A:HEC1108
|
0.0
|
22.9
|
1.0
|
NB
|
A:HEC1108
|
1.9
|
22.9
|
1.0
|
NA
|
A:HEC1108
|
2.0
|
22.7
|
1.0
|
NE2
|
A:HIS312
|
2.0
|
25.1
|
1.0
|
NE2
|
A:HIS298
|
2.0
|
22.5
|
1.0
|
NC
|
A:HEC1108
|
2.1
|
23.3
|
1.0
|
ND
|
A:HEC1108
|
2.1
|
21.0
|
1.0
|
CE1
|
A:HIS298
|
2.6
|
23.1
|
1.0
|
CE1
|
A:HIS312
|
2.8
|
26.4
|
1.0
|
C4B
|
A:HEC1108
|
3.0
|
24.1
|
1.0
|
C1B
|
A:HEC1108
|
3.0
|
23.2
|
1.0
|
C4A
|
A:HEC1108
|
3.0
|
23.3
|
1.0
|
C1C
|
A:HEC1108
|
3.0
|
23.8
|
1.0
|
C1A
|
A:HEC1108
|
3.0
|
23.2
|
1.0
|
C4D
|
A:HEC1108
|
3.1
|
22.6
|
1.0
|
CD2
|
A:HIS312
|
3.1
|
26.7
|
1.0
|
C1D
|
A:HEC1108
|
3.1
|
20.8
|
1.0
|
C4C
|
A:HEC1108
|
3.1
|
23.1
|
1.0
|
CD2
|
A:HIS298
|
3.3
|
25.0
|
1.0
|
CHC
|
A:HEC1108
|
3.3
|
25.6
|
1.0
|
CHB
|
A:HEC1108
|
3.3
|
21.7
|
1.0
|
CHA
|
A:HEC1108
|
3.4
|
21.5
|
1.0
|
CHD
|
A:HEC1108
|
3.5
|
22.7
|
1.0
|
ND1
|
A:HIS298
|
3.9
|
21.7
|
1.0
|
ND1
|
A:HIS312
|
4.0
|
28.3
|
1.0
|
CG
|
A:HIS312
|
4.2
|
26.1
|
1.0
|
C3B
|
A:HEC1108
|
4.2
|
24.8
|
1.0
|
C2B
|
A:HEC1108
|
4.2
|
24.6
|
1.0
|
C3A
|
A:HEC1108
|
4.2
|
23.8
|
1.0
|
CG
|
A:HIS298
|
4.2
|
24.2
|
1.0
|
C2A
|
A:HEC1108
|
4.2
|
24.4
|
1.0
|
C2C
|
A:HEC1108
|
4.3
|
24.1
|
1.0
|
C3D
|
A:HEC1108
|
4.3
|
22.3
|
1.0
|
C2D
|
A:HEC1108
|
4.3
|
22.0
|
1.0
|
C3C
|
A:HEC1108
|
4.3
|
24.3
|
1.0
|
|
Iron binding site 9 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 9 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1109
b:29.2
occ:1.00
|
FE
|
A:HEC1109
|
0.0
|
29.2
|
1.0
|
NC
|
A:HEC1109
|
2.0
|
29.5
|
1.0
|
NE2
|
A:HIS323
|
2.0
|
22.0
|
1.0
|
NE2
|
A:HIS313
|
2.0
|
30.0
|
1.0
|
NB
|
A:HEC1109
|
2.0
|
28.8
|
1.0
|
NA
|
A:HEC1109
|
2.1
|
28.6
|
1.0
|
ND
|
A:HEC1109
|
2.2
|
29.1
|
1.0
|
CE1
|
A:HIS313
|
2.7
|
29.3
|
1.0
|
C4C
|
A:HEC1109
|
2.9
|
31.4
|
1.0
|
CD2
|
A:HIS323
|
2.9
|
23.5
|
1.0
|
C1C
|
A:HEC1109
|
3.0
|
30.1
|
1.0
|
CE1
|
A:HIS323
|
3.0
|
19.6
|
1.0
|
C1B
|
A:HEC1109
|
3.0
|
30.2
|
1.0
|
C4B
|
A:HEC1109
|
3.0
|
29.7
|
1.0
|
C4A
|
A:HEC1109
|
3.1
|
29.9
|
1.0
|
C1D
|
A:HEC1109
|
3.1
|
31.0
|
1.0
|
C1A
|
A:HEC1109
|
3.2
|
31.1
|
1.0
|
C4D
|
A:HEC1109
|
3.2
|
30.7
|
1.0
|
CD2
|
A:HIS313
|
3.2
|
28.7
|
1.0
|
CHD
|
A:HEC1109
|
3.3
|
30.3
|
1.0
|
CHB
|
A:HEC1109
|
3.4
|
31.0
|
1.0
|
CHC
|
A:HEC1109
|
3.4
|
30.3
|
1.0
|
CHA
|
A:HEC1109
|
3.6
|
30.6
|
1.0
|
ND1
|
A:HIS313
|
3.9
|
28.8
|
1.0
|
ND1
|
A:HIS323
|
4.1
|
20.8
|
1.0
|
CG
|
A:HIS323
|
4.1
|
24.7
|
1.0
|
C3C
|
A:HEC1109
|
4.1
|
30.7
|
1.0
|
C2C
|
A:HEC1109
|
4.2
|
30.2
|
1.0
|
CG
|
A:HIS313
|
4.2
|
29.1
|
1.0
|
C2B
|
A:HEC1109
|
4.2
|
30.6
|
1.0
|
C3B
|
A:HEC1109
|
4.3
|
30.3
|
1.0
|
C3A
|
A:HEC1109
|
4.3
|
30.6
|
1.0
|
C2D
|
A:HEC1109
|
4.3
|
31.7
|
1.0
|
C2A
|
A:HEC1109
|
4.4
|
32.5
|
1.0
|
C3D
|
A:HEC1109
|
4.4
|
32.7
|
1.0
|
NH1
|
A:ARG347
|
5.0
|
32.5
|
1.0
|
|
Iron binding site 10 out
of 64 in 1h29
Go back to
Iron Binding Sites List in 1h29
Iron binding site 10 out
of 64 in the Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1110
b:29.6
occ:1.00
|
FE
|
A:HEC1110
|
0.0
|
29.6
|
1.0
|
NE2
|
A:HIS301
|
2.0
|
24.9
|
1.0
|
NE2
|
A:HIS353
|
2.0
|
27.9
|
1.0
|
NC
|
A:HEC1110
|
2.0
|
28.7
|
1.0
|
NB
|
A:HEC1110
|
2.0
|
27.5
|
1.0
|
NA
|
A:HEC1110
|
2.0
|
30.4
|
1.0
|
ND
|
A:HEC1110
|
2.1
|
30.0
|
1.0
|
CD2
|
A:HIS301
|
2.9
|
24.8
|
1.0
|
CE1
|
A:HIS353
|
3.0
|
25.4
|
1.0
|
CE1
|
A:HIS301
|
3.0
|
23.9
|
1.0
|
CD2
|
A:HIS353
|
3.0
|
28.3
|
1.0
|
C4A
|
A:HEC1110
|
3.0
|
30.3
|
1.0
|
C1B
|
A:HEC1110
|
3.0
|
28.3
|
1.0
|
C4C
|
A:HEC1110
|
3.1
|
29.9
|
1.0
|
C1A
|
A:HEC1110
|
3.1
|
30.2
|
1.0
|
C1D
|
A:HEC1110
|
3.1
|
31.0
|
1.0
|
C1C
|
A:HEC1110
|
3.1
|
28.8
|
1.0
|
C4B
|
A:HEC1110
|
3.1
|
26.6
|
1.0
|
C4D
|
A:HEC1110
|
3.1
|
30.5
|
1.0
|
CHD
|
A:HEC1110
|
3.4
|
30.6
|
1.0
|
CHA
|
A:HEC1110
|
3.4
|
30.9
|
1.0
|
CHB
|
A:HEC1110
|
3.4
|
27.9
|
1.0
|
CHC
|
A:HEC1110
|
3.4
|
29.0
|
1.0
|
ND1
|
A:HIS301
|
4.1
|
26.7
|
1.0
|
CG
|
A:HIS301
|
4.1
|
27.0
|
1.0
|
ND1
|
A:HIS353
|
4.1
|
29.3
|
1.0
|
CG
|
A:HIS353
|
4.2
|
29.0
|
1.0
|
C3A
|
A:HEC1110
|
4.3
|
30.1
|
1.0
|
C2B
|
A:HEC1110
|
4.3
|
27.1
|
1.0
|
C2A
|
A:HEC1110
|
4.3
|
31.4
|
1.0
|
C3B
|
A:HEC1110
|
4.3
|
26.2
|
1.0
|
C3C
|
A:HEC1110
|
4.3
|
28.6
|
1.0
|
C2C
|
A:HEC1110
|
4.3
|
29.6
|
1.0
|
C2D
|
A:HEC1110
|
4.3
|
29.7
|
1.0
|
C3D
|
A:HEC1110
|
4.3
|
29.7
|
1.0
|
CD2
|
A:LEU465
|
4.8
|
27.8
|
1.0
|
CE1
|
A:PHE296
|
4.8
|
28.1
|
1.0
|
|
Reference:
P.M.Matias,
A.V.Coelho,
F.M.A.Valente,
D.Placido,
J.Legall,
A.V.Xavier,
I.A.C.Pereira,
M.A.Carrondo.
Sulfate Respiration in Desulfovibrio Vulgaris Hildenborough: Structure of the 16-Heme Cytochrome C Hmca at 2.5 A Resolution and A View of Its Role in Transmembrane Electron Transfer J.Biol.Chem. V. 277 47907 2002.
ISSN: ISSN 0021-9258
PubMed: 12356749
DOI: 10.1074/JBC.M207465200
Page generated: Sat Aug 3 06:47:46 2024
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