Iron in PDB 1hba: High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
Protein crystallography data
The structure of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site, PDB code: 1hba
was solved by
J.S.Kavanaugh,
A.Arnone,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
2.10
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.000,
99.300,
66.000,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Other elements in 1hba:
The structure of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
(pdb code 1hba). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site, PDB code: 1hba:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1hba
Go back to
Iron Binding Sites List in 1hba
Iron binding site 1 out
of 4 in the High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:15.1
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
15.1
|
1.0
|
NA
|
A:HEM142
|
2.0
|
12.8
|
1.0
|
NC
|
A:HEM142
|
2.1
|
13.3
|
1.0
|
NB
|
A:HEM142
|
2.1
|
12.3
|
1.0
|
ND
|
A:HEM142
|
2.1
|
14.0
|
1.0
|
NE2
|
A:HIS87
|
2.2
|
8.0
|
1.0
|
CE1
|
A:HIS87
|
3.0
|
6.4
|
1.0
|
C1A
|
A:HEM142
|
3.1
|
13.8
|
1.0
|
C4D
|
A:HEM142
|
3.1
|
14.2
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
12.1
|
1.0
|
C1C
|
A:HEM142
|
3.1
|
13.5
|
1.0
|
C4A
|
A:HEM142
|
3.1
|
12.6
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
11.7
|
1.0
|
C4C
|
A:HEM142
|
3.1
|
13.1
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
14.2
|
1.0
|
CD2
|
A:HIS87
|
3.3
|
3.6
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
15.6
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
12.8
|
1.0
|
O
|
A:HOH219
|
3.5
|
18.4
|
1.0
|
CHB
|
A:HEM142
|
3.5
|
10.7
|
1.0
|
CHD
|
A:HEM142
|
3.5
|
12.6
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
8.3
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
13.7
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
13.6
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
14.8
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
12.9
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
13.4
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
12.3
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
9.8
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
14.8
|
1.0
|
CD1
|
A:LEU91
|
4.4
|
7.3
|
1.0
|
CG
|
A:HIS87
|
4.4
|
7.1
|
1.0
|
NE2
|
A:HIS58
|
4.5
|
15.0
|
1.0
|
CE1
|
A:HIS58
|
4.8
|
15.0
|
1.0
|
|
Iron binding site 2 out
of 4 in 1hba
Go back to
Iron Binding Sites List in 1hba
Iron binding site 2 out
of 4 in the High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:11.7
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
11.7
|
1.0
|
NB
|
B:HEM147
|
2.0
|
4.3
|
1.0
|
ND
|
B:HEM147
|
2.0
|
6.6
|
1.0
|
NA
|
B:HEM147
|
2.1
|
8.8
|
1.0
|
NC
|
B:HEM147
|
2.1
|
7.1
|
1.0
|
NE2
|
B:HIS92
|
2.2
|
8.8
|
1.0
|
C4B
|
B:HEM147
|
3.1
|
5.3
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
8.4
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
8.7
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
9.3
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
5.1
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
9.7
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
6.0
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
7.2
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
6.2
|
1.0
|
CD2
|
B:HIS92
|
3.3
|
8.2
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
6.5
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
9.9
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
8.2
|
1.0
|
CHD
|
B:HEM147
|
3.5
|
8.8
|
1.0
|
CG2
|
B:VAL67
|
4.2
|
3.6
|
1.0
|
ND1
|
B:HIS92
|
4.2
|
10.7
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
5.6
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
5.6
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
8.4
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
8.2
|
1.0
|
NE2
|
B:HIS63
|
4.3
|
15.8
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
7.9
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
8.6
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
5.5
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
6.5
|
1.0
|
CG
|
B:HIS92
|
4.4
|
13.6
|
1.0
|
CD1
|
B:LEU96
|
4.7
|
3.5
|
1.0
|
|
Iron binding site 3 out
of 4 in 1hba
Go back to
Iron Binding Sites List in 1hba
Iron binding site 3 out
of 4 in the High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:17.1
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
17.1
|
1.0
|
ND
|
C:HEM142
|
2.0
|
11.6
|
1.0
|
NA
|
C:HEM142
|
2.1
|
16.2
|
1.0
|
NC
|
C:HEM142
|
2.1
|
13.2
|
1.0
|
NB
|
C:HEM142
|
2.1
|
16.2
|
1.0
|
NE2
|
C:HIS87
|
2.2
|
14.4
|
1.0
|
CE1
|
C:HIS87
|
2.8
|
12.1
|
1.0
|
C4D
|
C:HEM142
|
3.1
|
12.2
|
1.0
|
C1A
|
C:HEM142
|
3.1
|
17.9
|
1.0
|
C1D
|
C:HEM142
|
3.1
|
11.4
|
1.0
|
C4C
|
C:HEM142
|
3.1
|
11.1
|
1.0
|
C4B
|
C:HEM142
|
3.1
|
16.2
|
1.0
|
C1B
|
C:HEM142
|
3.1
|
15.4
|
1.0
|
C4A
|
C:HEM142
|
3.1
|
16.3
|
1.0
|
C1C
|
C:HEM142
|
3.1
|
13.1
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
14.8
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
11.1
|
1.0
|
CHC
|
C:HEM142
|
3.5
|
14.2
|
1.0
|
CHB
|
C:HEM142
|
3.5
|
15.7
|
1.0
|
CD2
|
C:HIS87
|
3.5
|
11.3
|
1.0
|
O
|
C:HOH256
|
3.6
|
20.5
|
1.0
|
ND1
|
C:HIS87
|
4.1
|
11.6
|
1.0
|
C3D
|
C:HEM142
|
4.3
|
12.1
|
1.0
|
C2A
|
C:HEM142
|
4.3
|
18.5
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
17.3
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
12.0
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
17.1
|
1.0
|
C3A
|
C:HEM142
|
4.3
|
17.8
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
10.4
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
11.2
|
1.0
|
CG
|
C:HIS87
|
4.4
|
9.0
|
1.0
|
CD1
|
C:LEU91
|
4.5
|
10.7
|
1.0
|
NE2
|
C:HIS58
|
4.7
|
11.7
|
1.0
|
CE1
|
C:HIS58
|
4.8
|
6.4
|
1.0
|
|
Iron binding site 4 out
of 4 in 1hba
Go back to
Iron Binding Sites List in 1hba
Iron binding site 4 out
of 4 in the High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37BETA Trp-> Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:18.5
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
18.5
|
1.0
|
ND
|
D:HEM147
|
2.0
|
17.8
|
1.0
|
NB
|
D:HEM147
|
2.0
|
16.2
|
1.0
|
NA
|
D:HEM147
|
2.1
|
20.6
|
1.0
|
NC
|
D:HEM147
|
2.1
|
16.4
|
1.0
|
NE2
|
D:HIS92
|
2.2
|
17.5
|
1.0
|
CE1
|
D:HIS92
|
3.0
|
14.4
|
1.0
|
C4D
|
D:HEM147
|
3.1
|
20.0
|
1.0
|
C1B
|
D:HEM147
|
3.1
|
18.7
|
1.0
|
C4B
|
D:HEM147
|
3.1
|
17.3
|
1.0
|
C1D
|
D:HEM147
|
3.1
|
19.6
|
1.0
|
C4A
|
D:HEM147
|
3.1
|
19.5
|
1.0
|
C1C
|
D:HEM147
|
3.1
|
14.3
|
1.0
|
C1A
|
D:HEM147
|
3.1
|
19.0
|
1.0
|
C4C
|
D:HEM147
|
3.1
|
15.7
|
1.0
|
CD2
|
D:HIS92
|
3.3
|
14.5
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
18.4
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
19.6
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
16.7
|
1.0
|
CHD
|
D:HEM147
|
3.5
|
16.9
|
1.0
|
CG2
|
D:VAL67
|
4.2
|
13.1
|
1.0
|
ND1
|
D:HIS92
|
4.2
|
10.5
|
1.0
|
NE2
|
D:HIS63
|
4.2
|
16.1
|
1.0
|
C3D
|
D:HEM147
|
4.3
|
21.9
|
1.0
|
C2D
|
D:HEM147
|
4.3
|
18.8
|
1.0
|
C2B
|
D:HEM147
|
4.3
|
17.3
|
1.0
|
C3B
|
D:HEM147
|
4.3
|
16.9
|
1.0
|
C3A
|
D:HEM147
|
4.3
|
19.9
|
1.0
|
C2A
|
D:HEM147
|
4.3
|
19.2
|
1.0
|
C2C
|
D:HEM147
|
4.4
|
13.3
|
1.0
|
C3C
|
D:HEM147
|
4.4
|
13.4
|
1.0
|
CG
|
D:HIS92
|
4.4
|
13.1
|
1.0
|
CE1
|
D:HIS63
|
4.7
|
20.4
|
1.0
|
CD1
|
D:LEU96
|
4.9
|
17.0
|
1.0
|
CE1
|
D:PHE103
|
5.0
|
9.8
|
1.0
|
|
Reference:
J.S.Kavanaugh,
P.H.Rogers,
D.A.Case,
A.Arnone.
High-Resolution X-Ray Study of Deoxyhemoglobin Rothschild 37 Beta Trp----Arg: A Mutation That Creates An Intersubunit Chloride-Binding Site. Biochemistry V. 31 4111 1992.
ISSN: ISSN 0006-2960
PubMed: 1567857
DOI: 10.1021/BI00131A030
Page generated: Sat Aug 3 07:21:02 2024
|