Iron in PDB 1hbh: Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect

The structure of Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect, PDB code: 1hbh was solved by N.Ito, N.H.Komiyama, G.Fermi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.650, 96.300, 62.650, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Iron atom in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect (pdb code 1hbh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect, PDB code: 1hbh:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe144 b:30.8 occ:1.00 FE A:HEM144 0.0 30.8 1.0 NB A:HEM144 2.0 29.5 1.0 ND A:HEM144 2.0 30.7 1.0 NA A:HEM144 2.0 31.4 1.0 NC A:HEM144 2.1 30.4 1.0 NE2 A:HIS88 2.3 25.2 1.0 C4A A:HEM144 3.0 32.3 1.0 C1B A:HEM144 3.1 29.5 1.0 C4B A:HEM144 3.1 29.7 1.0 C4D A:HEM144 3.1 29.7 1.0 C1D A:HEM144 3.1 30.7 1.0 C1A A:HEM144 3.1 31.3 1.0 C1C A:HEM144 3.1 28.2 1.0 C4C A:HEM144 3.1 28.8 1.0 CE1 A:HIS88 3.1 22.7 1.0 CD2 A:HIS88 3.3 24.7 1.0 CHB A:HEM144 3.4 30.5 1.0 CHC A:HEM144 3.4 29.4 1.0 CHD A:HEM144 3.5 29.8 1.0 CHA A:HEM144 3.5 29.1 1.0 NE2 A:HIS59 4.1 34.9 1.0 CE1 A:HIS59 4.2 34.5 1.0 C3D A:HEM144 4.3 29.7 1.0 C3A A:HEM144 4.3 32.7 1.0 C3B A:HEM144 4.3 28.3 1.0 C2B A:HEM144 4.3 28.7 1.0 C2D A:HEM144 4.3 30.8 1.0 ND1 A:HIS88 4.3 23.8 1.0 C2A A:HEM144 4.3 32.7 1.0 C3C A:HEM144 4.3 28.9 1.0 CG2 A:VAL63 4.3 21.1 1.0 C2C A:HEM144 4.3 28.1 1.0 CG A:HIS88 4.4 24.0 1.0 O A:HOH158 4.6 59.9 1.0 CD1 A:LEU92 4.9 22.2 1.0

Iron binding site 2 out of 4 in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe148 b:25.7 occ:1.00 FE B:HEM148 0.0 25.7 1.0 ND B:HEM148 2.0 28.1 1.0 NA B:HEM148 2.0 24.7 1.0 NC B:HEM148 2.0 25.1 1.0 NB B:HEM148 2.1 21.0 1.0 NE2 B:HIS92 2.2 26.6 1.0 C4D B:HEM148 3.0 29.6 1.0 C4A B:HEM148 3.0 25.4 1.0 C1A B:HEM148 3.0 26.4 1.0 C1D B:HEM148 3.0 29.8 1.0 C4C B:HEM148 3.1 23.2 1.0 C1B B:HEM148 3.1 20.2 1.0 C4B B:HEM148 3.1 21.6 1.0 C1C B:HEM148 3.1 23.6 1.0 CE1 B:HIS92 3.2 26.7 1.0 CD2 B:HIS92 3.3 29.2 1.0 CHA B:HEM148 3.3 27.7 1.0 CHD B:HEM148 3.4 26.5 1.0 CHB B:HEM148 3.5 22.4 1.0 CHC B:HEM148 3.6 20.4 1.0 CG2 B:VAL67 3.9 23.0 1.0 NE2 B:HIS63 4.2 35.9 1.0 C3D B:HEM148 4.2 30.7 1.0 C2A B:HEM148 4.2 27.9 1.0 C2D B:HEM148 4.2 29.1 1.0 C3A B:HEM148 4.2 26.4 1.0 ND1 B:HIS92 4.3 29.0 1.0 C3C B:HEM148 4.3 22.3 1.0 C2B B:HEM148 4.3 18.7 1.0 C3B B:HEM148 4.3 19.6 1.0 C2C B:HEM148 4.3 22.2 1.0 CG B:HIS92 4.4 31.2 1.0 CE1 B:HIS63 4.5 36.3 1.0 CG1 B:VAL67 5.0 27.5 1.0

Iron binding site 3 out of 4 in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe144 b:23.4 occ:1.00 FE C:HEM144 0.0 23.4 1.0 ND C:HEM144 2.0 21.3 1.0 NA C:HEM144 2.0 22.9 1.0 NB C:HEM144 2.0 20.2 1.0 NC C:HEM144 2.1 18.5 1.0 NE2 C:HIS88 2.2 28.8 1.0 C1D C:HEM144 3.0 22.5 1.0 C1A C:HEM144 3.0 25.3 1.0 C4A C:HEM144 3.1 23.5 1.0 C4D C:HEM144 3.1 21.6 1.0 C1B C:HEM144 3.1 19.2 1.0 C4B C:HEM144 3.1 20.2 1.0 C4C C:HEM144 3.1 17.5 1.0 CE1 C:HIS88 3.1 28.7 1.0 C1C C:HEM144 3.1 16.4 1.0 CD2 C:HIS88 3.2 29.1 1.0 CHD C:HEM144 3.4 18.8 1.0 CHA C:HEM144 3.5 22.4 1.0 CHB C:HEM144 3.5 21.1 1.0 CHC C:HEM144 3.5 17.2 1.0 O C:HOH157 3.9 37.7 1.0 ND1 C:HIS88 4.2 30.8 1.0 C3D C:HEM144 4.2 23.1 1.0 C2D C:HEM144 4.2 23.2 1.0 C2A C:HEM144 4.3 26.7 1.0 C3A C:HEM144 4.3 25.7 1.0 C2B C:HEM144 4.3 19.0 1.0 CG C:HIS88 4.3 29.6 1.0 C3B C:HEM144 4.3 19.9 1.0 C3C C:HEM144 4.4 16.2 1.0 C2C C:HEM144 4.4 15.2 1.0 CG2 C:VAL63 4.4 15.4 1.0 CE1 C:HIS59 4.5 29.6 1.0 NE2 C:HIS59 4.6 28.6 1.0 CD1 C:LEU92 4.8 16.1 1.0

Iron binding site 4 out of 4 in the Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii and Structural Basis of the Root Effect within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe148 b:31.8 occ:1.00 FE D:HEM148 0.0 31.8 1.0 NC D:HEM148 2.0 32.5 1.0 NB D:HEM148 2.0 31.7 1.0 ND D:HEM148 2.0 34.9 1.0 NA D:HEM148 2.0 36.6 1.0 NE2 D:HIS92 2.1 24.8 1.0 CD2 D:HIS92 3.0 26.7 1.0 C4B D:HEM148 3.0 30.0 1.0 C4A D:HEM148 3.1 37.7 1.0 C1B D:HEM148 3.1 29.9 1.0 C1C D:HEM148 3.1 31.4 1.0 C1D D:HEM148 3.1 34.1 1.0 C4C D:HEM148 3.1 32.1 1.0 C4D D:HEM148 3.1 33.5 1.0 C1A D:HEM148 3.1 38.2 1.0 CE1 D:HIS92 3.1 24.9 1.0 CHB D:HEM148 3.4 34.1 1.0 CHD D:HEM148 3.4 33.3 1.0 CHC D:HEM148 3.5 30.7 1.0 CHA D:HEM148 3.5 34.9 1.0 CG2 D:VAL67 3.9 26.0 1.0 CG D:HIS92 4.2 28.0 1.0 ND1 D:HIS92 4.2 26.4 1.0 C3B D:HEM148 4.3 29.7 1.0 C2B D:HEM148 4.3 29.8 1.0 C3D D:HEM148 4.3 35.6 1.0 C3A D:HEM148 4.3 39.2 1.0 C2D D:HEM148 4.3 34.6 1.0 C3C D:HEM148 4.3 32.2 1.0 C2C D:HEM148 4.3 31.3 1.0 C2A D:HEM148 4.3 40.1 1.0 NE2 D:HIS63 4.5 34.1 1.0 CE1 D:HIS63 4.7 31.9 1.0 CD1 D:LEU96 5.0 23.3 1.0

N.Ito, N.H.Komiyama, G.Fermi. Structure of Deoxyhaemoglobin of the Antarctic Fish Pagothenia Bernacchii with An Analysis of the Structural Basis of the Root Effect By Comparison of the Liganded and Unliganded Haemoglobin Structures. J.Mol.Biol. V. 250 648 1995.
ISSN: ISSN 0022-2836
PubMed: 7623382
DOI: 10.1006/JMBI.1995.0405