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Iron in PDB 1hga: High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin

Protein crystallography data

The structure of High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin, PDB code: 1hga was solved by R.Liddington, Z.Derewenda, E.Dodson, R.Hubbard, G.Dodson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.780, 97.780, 65.490, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin (pdb code 1hga). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin, PDB code: 1hga:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1hga

Go back to Iron Binding Sites List in 1hga
Iron binding site 1 out of 4 in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:18.9
occ:1.00
FE A:HEM142 0.0 18.9 1.0
NA A:HEM142 2.0 18.6 1.0
NB A:HEM142 2.0 15.7 1.0
ND A:HEM142 2.0 18.4 1.0
NC A:HEM142 2.1 13.9 1.0
NE2 A:HIS87 2.2 12.3 1.0
C1A A:HEM142 3.0 15.4 1.0
C4A A:HEM142 3.0 20.9 1.0
C4D A:HEM142 3.0 11.1 1.0
C1B A:HEM142 3.0 12.3 1.0
C4B A:HEM142 3.1 12.7 1.0
C1D A:HEM142 3.1 12.5 1.0
C1C A:HEM142 3.1 18.0 1.0
C4C A:HEM142 3.1 19.1 1.0
CE1 A:HIS87 3.2 23.3 1.0
CD2 A:HIS87 3.2 6.6 1.0
CHA A:HEM142 3.3 13.9 1.0
CHB A:HEM142 3.4 17.5 1.0
CHC A:HEM142 3.5 15.8 1.0
CHD A:HEM142 3.5 14.9 1.0
C2A A:HEM142 4.2 12.9 1.0
C3A A:HEM142 4.2 15.9 1.0
C3D A:HEM142 4.3 24.9 1.0
C2B A:HEM142 4.3 18.9 1.0
ND1 A:HIS87 4.3 16.8 1.0
C2D A:HEM142 4.3 21.8 1.0
C3B A:HEM142 4.3 16.4 1.0
CG A:HIS87 4.3 9.7 1.0
C2C A:HEM142 4.4 12.5 1.0
CD1 A:LEU91 4.4 14.9 1.0
C3C A:HEM142 4.4 14.8 1.0
NE2 A:HIS58 4.4 23.2 1.0
CE1 A:HIS58 4.6 14.1 1.0

Iron binding site 2 out of 4 in 1hga

Go back to Iron Binding Sites List in 1hga
Iron binding site 2 out of 4 in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:16.9
occ:1.00
FE B:HEM147 0.0 16.9 1.0
NA B:HEM147 2.0 10.9 1.0
ND B:HEM147 2.0 18.9 1.0
NB B:HEM147 2.0 19.3 1.0
NC B:HEM147 2.0 11.6 1.0
NE2 B:HIS92 2.2 10.3 1.0
C4A B:HEM147 3.0 9.9 1.0
C1A B:HEM147 3.0 15.6 1.0
CE1 B:HIS92 3.0 12.8 1.0
C4D B:HEM147 3.1 16.5 1.0
C1B B:HEM147 3.1 11.8 1.0
C1C B:HEM147 3.1 19.7 1.0
C1D B:HEM147 3.1 14.4 1.0
C4B B:HEM147 3.1 13.7 1.0
C4C B:HEM147 3.1 6.1 1.0
CD2 B:HIS92 3.3 12.1 1.0
CHB B:HEM147 3.4 10.4 1.0
CHA B:HEM147 3.4 22.7 1.0
CHD B:HEM147 3.5 14.0 1.0
CHC B:HEM147 3.5 9.0 1.0
NE2 B:HIS63 4.1 17.4 1.0
CG2 B:VAL67 4.1 14.5 1.0
ND1 B:HIS92 4.2 12.8 1.0
C3A B:HEM147 4.2 11.6 1.0
C2A B:HEM147 4.2 11.4 1.0
C2B B:HEM147 4.3 14.2 1.0
C3D B:HEM147 4.3 13.5 1.0
C3B B:HEM147 4.3 22.5 1.0
C2D B:HEM147 4.3 21.2 1.0
C2C B:HEM147 4.3 12.7 1.0
C3C B:HEM147 4.3 16.6 1.0
CG B:HIS92 4.4 16.4 1.0
CE1 B:HIS63 4.5 18.8 1.0

Iron binding site 3 out of 4 in 1hga

Go back to Iron Binding Sites List in 1hga
Iron binding site 3 out of 4 in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe142

b:20.6
occ:1.00
FE C:HEM142 0.0 20.6 1.0
ND C:HEM142 2.0 16.3 1.0
NC C:HEM142 2.0 21.8 1.0
NB C:HEM142 2.0 19.4 1.0
NA C:HEM142 2.0 19.8 1.0
NE2 C:HIS87 2.2 16.3 1.0
C4D C:HEM142 3.0 20.4 1.0
C1A C:HEM142 3.1 17.6 1.0
C1C C:HEM142 3.1 9.8 1.0
C4B C:HEM142 3.1 8.1 1.0
C1D C:HEM142 3.1 23.8 1.0
C4C C:HEM142 3.1 14.7 1.0
C1B C:HEM142 3.1 28.7 1.0
C4A C:HEM142 3.1 19.1 1.0
CE1 C:HIS87 3.1 13.4 1.0
CD2 C:HIS87 3.3 10.7 1.0
CHA C:HEM142 3.4 15.8 1.0
CHC C:HEM142 3.4 9.4 1.0
CHD C:HEM142 3.5 16.0 1.0
CHB C:HEM142 3.5 17.8 1.0
C3D C:HEM142 4.3 20.4 1.0
ND1 C:HIS87 4.3 15.0 1.0
C2D C:HEM142 4.3 10.7 1.0
C2C C:HEM142 4.3 13.2 1.0
C3B C:HEM142 4.3 20.9 1.0
C2B C:HEM142 4.3 26.1 1.0
C3C C:HEM142 4.3 10.8 1.0
C2A C:HEM142 4.3 13.2 1.0
C3A C:HEM142 4.3 18.7 1.0
CG C:HIS87 4.4 14.1 1.0
CD1 C:LEU91 4.4 13.3 1.0
NE2 C:HIS58 4.4 22.6 1.0
CE1 C:HIS58 4.7 21.1 1.0

Iron binding site 4 out of 4 in 1hga

Go back to Iron Binding Sites List in 1hga
Iron binding site 4 out of 4 in the High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of High Resolution Crystal Structures and Comparisons of T State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy) Haemoglobin and T(Met)Haemoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:21.2
occ:1.00
FE D:HEM147 0.0 21.2 1.0
ND D:HEM147 1.9 24.8 1.0
NC D:HEM147 2.0 23.1 1.0
NA D:HEM147 2.1 22.8 1.0
NE2 D:HIS92 2.1 16.8 1.0
NB D:HEM147 2.1 18.9 1.0
CE1 D:HIS92 2.9 17.7 1.0
C1D D:HEM147 2.9 23.9 1.0
C4D D:HEM147 3.0 20.2 1.0
C4C D:HEM147 3.0 19.2 1.0
C1A D:HEM147 3.1 27.4 1.0
C1C D:HEM147 3.1 20.6 1.0
C4A D:HEM147 3.1 25.0 1.0
C1B D:HEM147 3.1 20.5 1.0
C4B D:HEM147 3.2 18.4 1.0
CD2 D:HIS92 3.2 12.8 1.0
CHD D:HEM147 3.3 24.3 1.0
CHA D:HEM147 3.4 22.8 1.0
CHC D:HEM147 3.5 14.7 1.0
CHB D:HEM147 3.6 22.1 1.0
NE2 D:HIS63 4.0 27.9 1.0
ND1 D:HIS92 4.1 16.2 1.0
C3D D:HEM147 4.1 20.5 1.0
C2D D:HEM147 4.1 18.8 1.0
CG2 D:VAL67 4.2 28.1 1.0
CG D:HIS92 4.3 13.2 1.0
C3C D:HEM147 4.3 12.8 1.0
C2A D:HEM147 4.3 27.2 1.0
C2C D:HEM147 4.3 23.5 1.0
C3A D:HEM147 4.3 21.9 1.0
C2B D:HEM147 4.4 19.8 1.0
C3B D:HEM147 4.4 25.3 1.0
CE1 D:HIS63 4.4 35.6 1.0
CD1 D:LEU96 4.8 17.8 1.0

Reference:

R.Liddington, Z.Derewenda, E.Dodson, R.Hubbard, G.Dodson. High Resolution Crystal Structures and Comparisons of T-State Deoxyhaemoglobin and Two Liganded T-State Haemoglobins: T(Alpha-Oxy)Haemoglobin and T(Met)Haemoglobin. J.Mol.Biol. V. 228 551 1992.
ISSN: ISSN 0022-2836
PubMed: 1453464
DOI: 10.1016/0022-2836(92)90842-8
Page generated: Sat Aug 3 07:41:40 2024

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