Iron in PDB 1hrr: The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
Iron Binding Sites:
The binding sites of Iron atom in the The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
(pdb code 1hrr). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr), PDB code: 1hrr:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1hrr
Go back to
Iron Binding Sites List in 1hrr
Iron binding site 1 out
of 4 in the The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe86
b:0.0
occ:1.00
|
FE1
|
A:SF486
|
0.0
|
0.0
|
1.0
|
SG
|
A:CYS43
|
2.0
|
0.0
|
1.0
|
S2
|
A:SF486
|
2.2
|
0.0
|
1.0
|
S3
|
A:SF486
|
2.2
|
0.0
|
1.0
|
S4
|
A:SF486
|
2.2
|
0.0
|
1.0
|
FE2
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE4
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE3
|
A:SF486
|
2.5
|
0.0
|
1.0
|
HA
|
A:CYS43
|
3.0
|
0.0
|
1.0
|
HG13
|
A:ILE71
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS43
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS43
|
3.2
|
0.0
|
1.0
|
CA
|
A:CYS43
|
3.6
|
0.0
|
1.0
|
S1
|
A:SF486
|
3.6
|
0.0
|
1.0
|
HA
|
A:TRP76
|
3.9
|
0.0
|
1.0
|
HG23
|
A:ILE71
|
4.0
|
0.0
|
1.0
|
CG1
|
A:ILE71
|
4.0
|
0.0
|
1.0
|
HB2
|
A:CYS63
|
4.0
|
0.0
|
1.0
|
HB2
|
A:CYS43
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS46
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS46
|
4.1
|
0.0
|
1.0
|
H
|
A:CYS43
|
4.1
|
0.0
|
1.0
|
HG12
|
A:ILE71
|
4.2
|
0.0
|
1.0
|
HD1
|
A:TYR19
|
4.2
|
0.0
|
1.0
|
N
|
A:CYS43
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS77
|
4.2
|
0.0
|
1.0
|
HB3
|
A:CYS77
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS46
|
4.3
|
0.0
|
1.0
|
HD1
|
A:TRP80
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS63
|
4.4
|
0.0
|
1.0
|
SG
|
A:CYS77
|
4.4
|
0.0
|
1.0
|
CB
|
A:CYS46
|
4.4
|
0.0
|
1.0
|
N
|
A:CYS77
|
4.4
|
0.0
|
1.0
|
C
|
A:TRP76
|
4.6
|
0.0
|
1.0
|
HB
|
A:ILE71
|
4.6
|
0.0
|
1.0
|
HD13
|
A:ILE71
|
4.6
|
0.0
|
1.0
|
CA
|
A:TRP76
|
4.7
|
0.0
|
1.0
|
CB
|
A:CYS63
|
4.7
|
0.0
|
1.0
|
CB
|
A:CYS77
|
4.8
|
0.0
|
1.0
|
CB
|
A:ILE71
|
4.8
|
0.0
|
1.0
|
HE1
|
A:TYR19
|
4.8
|
0.0
|
1.0
|
CG2
|
A:ILE71
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS43
|
4.9
|
0.0
|
1.0
|
N
|
A:TRP76
|
4.9
|
0.0
|
1.0
|
CD1
|
A:ILE71
|
4.9
|
0.0
|
1.0
|
HB2
|
A:MET49
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 4 in 1hrr
Go back to
Iron Binding Sites List in 1hrr
Iron binding site 2 out
of 4 in the The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe86
b:0.0
occ:1.00
|
FE2
|
A:SF486
|
0.0
|
0.0
|
1.0
|
SG
|
A:CYS46
|
2.0
|
0.0
|
1.0
|
S1
|
A:SF486
|
2.1
|
0.0
|
1.0
|
S4
|
A:SF486
|
2.2
|
0.0
|
1.0
|
S3
|
A:SF486
|
2.2
|
0.0
|
1.0
|
FE1
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE3
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE4
|
A:SF486
|
2.5
|
0.0
|
1.0
|
CB
|
A:CYS46
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS46
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS46
|
3.1
|
0.0
|
1.0
|
HA
|
A:TRP80
|
3.3
|
0.0
|
1.0
|
HA
|
A:CYS43
|
3.4
|
0.0
|
1.0
|
HG3
|
A:GLN64
|
3.5
|
0.0
|
1.0
|
S2
|
A:SF486
|
3.6
|
0.0
|
1.0
|
HD1
|
A:TRP80
|
3.9
|
0.0
|
1.0
|
HB2
|
A:MET49
|
4.2
|
0.0
|
1.0
|
CD
|
A:GLN64
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS63
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS43
|
4.3
|
0.0
|
1.0
|
HE21
|
A:GLN64
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS77
|
4.3
|
0.0
|
1.0
|
CG
|
A:GLN64
|
4.3
|
0.0
|
1.0
|
CA
|
A:TRP80
|
4.4
|
0.0
|
1.0
|
NE2
|
A:GLN64
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS46
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS43
|
4.5
|
0.0
|
1.0
|
H
|
A:THR81
|
4.5
|
0.0
|
1.0
|
HB2
|
A:TRP80
|
4.5
|
0.0
|
1.0
|
HB3
|
A:CYS43
|
4.6
|
0.0
|
1.0
|
CD1
|
A:TRP80
|
4.7
|
0.0
|
1.0
|
HA
|
A:CYS46
|
4.7
|
0.0
|
1.0
|
HB2
|
A:SER79
|
4.7
|
0.0
|
1.0
|
N
|
A:TRP80
|
4.7
|
0.0
|
1.0
|
OE1
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
CB
|
A:CYS43
|
4.7
|
0.0
|
1.0
|
HE22
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
HG2
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
H
|
A:CYS77
|
4.8
|
0.0
|
1.0
|
HG13
|
A:ILE71
|
4.9
|
0.0
|
1.0
|
CB
|
A:TRP80
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS46
|
5.0
|
0.0
|
1.0
|
H
|
A:TRP80
|
5.0
|
0.0
|
1.0
|
HB2
|
A:CYS63
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 4 in 1hrr
Go back to
Iron Binding Sites List in 1hrr
Iron binding site 3 out
of 4 in the The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe86
b:0.0
occ:1.00
|
FE3
|
A:SF486
|
0.0
|
0.0
|
1.0
|
SG
|
A:CYS63
|
2.0
|
0.0
|
1.0
|
S1
|
A:SF486
|
2.1
|
0.0
|
1.0
|
S2
|
A:SF486
|
2.2
|
0.0
|
1.0
|
S4
|
A:SF486
|
2.2
|
0.0
|
1.0
|
FE4
|
A:SF486
|
2.4
|
0.0
|
1.0
|
FE2
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE1
|
A:SF486
|
2.5
|
0.0
|
1.0
|
HB2
|
A:CYS63
|
2.9
|
0.0
|
1.0
|
CB
|
A:CYS63
|
3.1
|
0.0
|
1.0
|
HG3
|
A:GLN64
|
3.1
|
0.0
|
1.0
|
HG13
|
A:ILE71
|
3.6
|
0.0
|
1.0
|
S3
|
A:SF486
|
3.6
|
0.0
|
1.0
|
HG23
|
A:ILE71
|
3.7
|
0.0
|
1.0
|
HA
|
A:CYS63
|
3.7
|
0.0
|
1.0
|
HD2
|
A:PHE66
|
3.9
|
0.0
|
1.0
|
HB3
|
A:CYS63
|
3.9
|
0.0
|
1.0
|
CA
|
A:CYS63
|
4.0
|
0.0
|
1.0
|
CG
|
A:GLN64
|
4.2
|
0.0
|
1.0
|
SG
|
A:CYS77
|
4.2
|
0.0
|
1.0
|
HE21
|
A:GLN64
|
4.2
|
0.0
|
1.0
|
SG
|
A:CYS46
|
4.3
|
0.0
|
1.0
|
HB2
|
A:GLN64
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS43
|
4.4
|
0.0
|
1.0
|
C
|
A:CYS63
|
4.6
|
0.0
|
1.0
|
CG1
|
A:ILE71
|
4.7
|
0.0
|
1.0
|
H
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
CG2
|
A:ILE71
|
4.7
|
0.0
|
1.0
|
HD13
|
A:ILE71
|
4.7
|
0.0
|
1.0
|
HB3
|
A:CYS43
|
4.7
|
0.0
|
1.0
|
NE2
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
N
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
CD
|
A:GLN64
|
4.7
|
0.0
|
1.0
|
HG2
|
A:GLN64
|
4.8
|
0.0
|
1.0
|
HB3
|
A:CYS46
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLN64
|
4.8
|
0.0
|
1.0
|
HB2
|
A:PHE66
|
4.8
|
0.0
|
1.0
|
HB3
|
A:CYS77
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS43
|
4.8
|
0.0
|
1.0
|
HD12
|
A:LEU17
|
4.9
|
0.0
|
1.0
|
HB2
|
A:SER79
|
4.9
|
0.0
|
1.0
|
HG22
|
A:ILE71
|
4.9
|
0.0
|
1.0
|
HB2
|
A:MET49
|
4.9
|
0.0
|
1.0
|
CD2
|
A:PHE66
|
4.9
|
0.0
|
1.0
|
|
Iron binding site 4 out
of 4 in 1hrr
Go back to
Iron Binding Sites List in 1hrr
Iron binding site 4 out
of 4 in the The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Three Dimensional Structure of the Reduced High Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe86
b:0.0
occ:1.00
|
FE4
|
A:SF486
|
0.0
|
0.0
|
1.0
|
SG
|
A:CYS77
|
2.0
|
0.0
|
1.0
|
S1
|
A:SF486
|
2.1
|
0.0
|
1.0
|
S2
|
A:SF486
|
2.1
|
0.0
|
1.0
|
S3
|
A:SF486
|
2.2
|
0.0
|
1.0
|
FE3
|
A:SF486
|
2.4
|
0.0
|
1.0
|
FE2
|
A:SF486
|
2.5
|
0.0
|
1.0
|
FE1
|
A:SF486
|
2.5
|
0.0
|
1.0
|
HB3
|
A:CYS77
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS77
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS77
|
3.5
|
0.0
|
1.0
|
HB2
|
A:SER79
|
3.6
|
0.0
|
1.0
|
S4
|
A:SF486
|
3.6
|
0.0
|
1.0
|
N
|
A:CYS77
|
3.7
|
0.0
|
1.0
|
CA
|
A:CYS77
|
3.8
|
0.0
|
1.0
|
HB2
|
A:CYS77
|
4.0
|
0.0
|
1.0
|
HA
|
A:TRP80
|
4.1
|
0.0
|
1.0
|
H
|
A:TRP80
|
4.2
|
0.0
|
1.0
|
SG
|
A:CYS63
|
4.2
|
0.0
|
1.0
|
H
|
A:SER79
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS43
|
4.3
|
0.0
|
1.0
|
SG
|
A:CYS46
|
4.3
|
0.0
|
1.0
|
N
|
A:TRP80
|
4.3
|
0.0
|
1.0
|
C
|
A:CYS77
|
4.4
|
0.0
|
1.0
|
HB2
|
A:TRP80
|
4.4
|
0.0
|
1.0
|
O
|
A:CYS77
|
4.4
|
0.0
|
1.0
|
C
|
A:TRP76
|
4.5
|
0.0
|
1.0
|
HD12
|
A:LEU17
|
4.5
|
0.0
|
1.0
|
HD1
|
A:TYR19
|
4.6
|
0.0
|
1.0
|
CB
|
A:SER79
|
4.6
|
0.0
|
1.0
|
HA
|
A:TRP76
|
4.7
|
0.0
|
1.0
|
CA
|
A:TRP80
|
4.7
|
0.0
|
1.0
|
C
|
A:SER79
|
4.7
|
0.0
|
1.0
|
HE21
|
A:GLN64
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS77
|
4.8
|
0.0
|
1.0
|
HG3
|
A:GLN64
|
4.8
|
0.0
|
1.0
|
HB3
|
A:LEU17
|
4.8
|
0.0
|
1.0
|
N
|
A:SER79
|
4.9
|
0.0
|
1.0
|
HD1
|
A:TRP80
|
4.9
|
0.0
|
1.0
|
HG23
|
A:ILE71
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS43
|
5.0
|
0.0
|
1.0
|
CA
|
A:SER79
|
5.0
|
0.0
|
1.0
|
HG13
|
A:ILE71
|
5.0
|
0.0
|
1.0
|
|
Reference:
L.Banci,
I.Bertini,
A.Dikiy,
D.H.Kastrau,
C.Luchinat,
P.Sompornpisut.
The Three-Dimensional Solution Structure of the Reduced High-Potential Iron-Sulfur Protein From Chromatium Vinosum Through uc(Nmr). Biochemistry V. 34 206 1995.
ISSN: ISSN 0006-2960
PubMed: 7819198
DOI: 10.1021/BI00001A025
Page generated: Sat Aug 3 07:49:07 2024
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