Iron in PDB 1hv4: Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
Protein crystallography data
The structure of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form), PDB code: 1hv4
was solved by
Y.Liang,
Z.Hua,
X.Liang,
Q.Xu,
G.Lu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
36.89 /
2.80
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.660,
94.100,
59.230,
71.55,
65.10,
83.10
|
|
R / Rfree (%)
|
19.7 /
24.3
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
(pdb code 1hv4). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form), PDB code: 1hv4:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 1 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe151
b:25.5
occ:1.00
|
FE
|
A:HEM151
|
0.0
|
25.5
|
1.0
|
|
NC
|
A:HEM151
|
1.9
|
22.1
|
1.0
|
|
ND
|
A:HEM151
|
1.9
|
25.6
|
1.0
|
|
NA
|
A:HEM151
|
2.0
|
30.1
|
1.0
|
|
NB
|
A:HEM151
|
2.1
|
23.7
|
1.0
|
|
NE2
|
A:HIS87
|
2.3
|
25.0
|
1.0
|
|
C4C
|
A:HEM151
|
2.8
|
19.1
|
1.0
|
|
C1D
|
A:HEM151
|
2.9
|
23.6
|
1.0
|
|
C1C
|
A:HEM151
|
3.0
|
16.7
|
1.0
|
|
C4D
|
A:HEM151
|
3.0
|
22.7
|
1.0
|
|
C4A
|
A:HEM151
|
3.1
|
30.2
|
1.0
|
|
C1A
|
A:HEM151
|
3.1
|
29.1
|
1.0
|
|
C1B
|
A:HEM151
|
3.1
|
19.6
|
1.0
|
|
C4B
|
A:HEM151
|
3.1
|
19.4
|
1.0
|
|
CHD
|
A:HEM151
|
3.2
|
21.4
|
1.0
|
|
CD2
|
A:HIS87
|
3.3
|
27.5
|
1.0
|
|
CE1
|
A:HIS87
|
3.3
|
26.8
|
1.0
|
|
CHC
|
A:HEM151
|
3.4
|
14.6
|
1.0
|
|
CHA
|
A:HEM151
|
3.5
|
23.9
|
1.0
|
|
CHB
|
A:HEM151
|
3.5
|
28.0
|
1.0
|
|
C2D
|
A:HEM151
|
4.1
|
23.9
|
1.0
|
|
C3C
|
A:HEM151
|
4.1
|
15.4
|
1.0
|
|
C2C
|
A:HEM151
|
4.2
|
18.2
|
1.0
|
|
C3D
|
A:HEM151
|
4.2
|
21.1
|
1.0
|
|
NE2
|
A:HIS58
|
4.3
|
39.6
|
1.0
|
|
C3A
|
A:HEM151
|
4.3
|
31.9
|
1.0
|
|
C2A
|
A:HEM151
|
4.3
|
33.8
|
1.0
|
|
C2B
|
A:HEM151
|
4.3
|
18.4
|
1.0
|
|
C3B
|
A:HEM151
|
4.4
|
20.5
|
1.0
|
|
ND1
|
A:HIS87
|
4.4
|
20.6
|
1.0
|
|
CG
|
A:HIS87
|
4.4
|
23.4
|
1.0
|
|
CE1
|
A:HIS58
|
4.8
|
38.3
|
1.0
|
|
Iron binding site 2 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 2 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe152
b:34.6
occ:1.00
|
FE
|
B:HEM152
|
0.0
|
34.6
|
1.0
|
|
ND
|
B:HEM152
|
1.9
|
29.7
|
1.0
|
|
NB
|
B:HEM152
|
2.0
|
28.4
|
1.0
|
|
NC
|
B:HEM152
|
2.1
|
29.6
|
1.0
|
|
NA
|
B:HEM152
|
2.1
|
38.1
|
1.0
|
|
NE2
|
B:HIS92
|
2.3
|
32.7
|
1.0
|
|
C1D
|
B:HEM152
|
2.9
|
26.2
|
1.0
|
|
C4D
|
B:HEM152
|
3.0
|
32.1
|
1.0
|
|
C1B
|
B:HEM152
|
3.0
|
27.9
|
1.0
|
|
CE1
|
B:HIS92
|
3.1
|
31.9
|
1.0
|
|
C4B
|
B:HEM152
|
3.1
|
24.8
|
1.0
|
|
C4C
|
B:HEM152
|
3.1
|
26.9
|
1.0
|
|
C4A
|
B:HEM152
|
3.1
|
37.0
|
1.0
|
|
C1C
|
B:HEM152
|
3.1
|
25.5
|
1.0
|
|
C1A
|
B:HEM152
|
3.2
|
36.8
|
1.0
|
|
CHD
|
B:HEM152
|
3.4
|
31.4
|
1.0
|
|
CHB
|
B:HEM152
|
3.4
|
35.1
|
1.0
|
|
CHA
|
B:HEM152
|
3.5
|
33.1
|
1.0
|
|
CD2
|
B:HIS92
|
3.5
|
33.2
|
1.0
|
|
CHC
|
B:HEM152
|
3.5
|
24.5
|
1.0
|
|
C2D
|
B:HEM152
|
4.2
|
28.6
|
1.0
|
|
C3D
|
B:HEM152
|
4.2
|
34.2
|
1.0
|
|
NE2
|
B:HIS63
|
4.2
|
20.2
|
1.0
|
|
C2B
|
B:HEM152
|
4.3
|
25.4
|
1.0
|
|
C3B
|
B:HEM152
|
4.3
|
25.7
|
1.0
|
|
ND1
|
B:HIS92
|
4.3
|
34.0
|
1.0
|
|
C3C
|
B:HEM152
|
4.3
|
22.3
|
1.0
|
|
C3A
|
B:HEM152
|
4.3
|
37.8
|
1.0
|
|
C2C
|
B:HEM152
|
4.4
|
24.4
|
1.0
|
|
CG2
|
B:VAL67
|
4.4
|
21.8
|
1.0
|
|
C2A
|
B:HEM152
|
4.4
|
39.4
|
1.0
|
|
CG
|
B:HIS92
|
4.5
|
33.8
|
1.0
|
|
CE1
|
B:HIS63
|
4.6
|
21.4
|
1.0
|
|
Iron binding site 3 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 3 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe153
b:3.8
occ:1.00
|
FE
|
C:HEM153
|
0.0
|
3.8
|
1.0
|
|
NC
|
C:HEM153
|
1.9
|
8.5
|
1.0
|
|
ND
|
C:HEM153
|
1.9
|
19.2
|
1.0
|
|
NA
|
C:HEM153
|
2.0
|
17.6
|
1.0
|
|
NB
|
C:HEM153
|
2.1
|
16.7
|
1.0
|
|
NE2
|
C:HIS87
|
2.3
|
13.3
|
1.0
|
|
C4C
|
C:HEM153
|
2.9
|
10.2
|
1.0
|
|
C1D
|
C:HEM153
|
2.9
|
15.6
|
1.0
|
|
C4A
|
C:HEM153
|
3.0
|
19.7
|
1.0
|
|
C1C
|
C:HEM153
|
3.0
|
4.0
|
1.0
|
|
C1A
|
C:HEM153
|
3.0
|
22.6
|
1.0
|
|
C4D
|
C:HEM153
|
3.1
|
21.1
|
1.0
|
|
C1B
|
C:HEM153
|
3.1
|
11.5
|
1.0
|
|
C4B
|
C:HEM153
|
3.1
|
12.8
|
1.0
|
|
CD2
|
C:HIS87
|
3.3
|
16.1
|
1.0
|
|
CE1
|
C:HIS87
|
3.3
|
15.3
|
1.0
|
|
CHD
|
C:HEM153
|
3.3
|
11.4
|
1.0
|
|
CHB
|
C:HEM153
|
3.4
|
18.0
|
1.0
|
|
CHC
|
C:HEM153
|
3.4
|
12.6
|
1.0
|
|
CHA
|
C:HEM153
|
3.5
|
21.0
|
1.0
|
|
C2D
|
C:HEM153
|
4.1
|
19.4
|
1.0
|
|
C3C
|
C:HEM153
|
4.2
|
9.0
|
1.0
|
|
C2C
|
C:HEM153
|
4.2
|
3.5
|
1.0
|
|
C3D
|
C:HEM153
|
4.2
|
20.0
|
1.0
|
|
C3A
|
C:HEM153
|
4.2
|
21.1
|
1.0
|
|
C2A
|
C:HEM153
|
4.3
|
24.2
|
1.0
|
|
NE2
|
C:HIS58
|
4.3
|
22.7
|
1.0
|
|
C2B
|
C:HEM153
|
4.3
|
11.7
|
1.0
|
|
C3B
|
C:HEM153
|
4.3
|
10.0
|
1.0
|
|
ND1
|
C:HIS87
|
4.4
|
16.7
|
1.0
|
|
CG
|
C:HIS87
|
4.4
|
18.8
|
1.0
|
|
CE1
|
C:HIS58
|
4.8
|
24.4
|
1.0
|
|
Iron binding site 4 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 4 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe154
b:46.8
occ:1.00
|
FE
|
D:HEM154
|
0.0
|
46.8
|
1.0
|
|
NB
|
D:HEM154
|
2.0
|
40.5
|
1.0
|
|
ND
|
D:HEM154
|
2.0
|
42.3
|
1.0
|
|
NA
|
D:HEM154
|
2.0
|
45.9
|
1.0
|
|
NC
|
D:HEM154
|
2.1
|
39.2
|
1.0
|
|
NE2
|
D:HIS92
|
2.4
|
39.3
|
1.0
|
|
C1B
|
D:HEM154
|
3.0
|
40.4
|
1.0
|
|
C4A
|
D:HEM154
|
3.0
|
46.1
|
1.0
|
|
C1D
|
D:HEM154
|
3.0
|
39.0
|
1.0
|
|
C4D
|
D:HEM154
|
3.0
|
43.0
|
1.0
|
|
C4B
|
D:HEM154
|
3.1
|
38.9
|
1.0
|
|
C1A
|
D:HEM154
|
3.1
|
47.2
|
1.0
|
|
CE1
|
D:HIS92
|
3.1
|
41.2
|
1.0
|
|
C4C
|
D:HEM154
|
3.2
|
34.2
|
1.0
|
|
C1C
|
D:HEM154
|
3.2
|
39.1
|
1.0
|
|
CHB
|
D:HEM154
|
3.4
|
45.5
|
1.0
|
|
CHD
|
D:HEM154
|
3.5
|
38.0
|
1.0
|
|
CHA
|
D:HEM154
|
3.5
|
44.9
|
1.0
|
|
CHC
|
D:HEM154
|
3.5
|
38.6
|
1.0
|
|
CD2
|
D:HIS92
|
3.6
|
42.7
|
1.0
|
|
NE2
|
D:HIS63
|
4.1
|
34.8
|
1.0
|
|
CG2
|
D:VAL67
|
4.2
|
25.4
|
1.0
|
|
C2B
|
D:HEM154
|
4.2
|
35.8
|
1.0
|
|
C3D
|
D:HEM154
|
4.2
|
41.4
|
1.0
|
|
C2D
|
D:HEM154
|
4.2
|
38.2
|
1.0
|
|
C3B
|
D:HEM154
|
4.3
|
37.7
|
1.0
|
|
C3A
|
D:HEM154
|
4.3
|
46.6
|
1.0
|
|
ND1
|
D:HIS92
|
4.4
|
44.8
|
1.0
|
|
C2A
|
D:HEM154
|
4.4
|
46.4
|
1.0
|
|
C3C
|
D:HEM154
|
4.4
|
34.1
|
1.0
|
|
C2C
|
D:HEM154
|
4.4
|
36.2
|
1.0
|
|
CE1
|
D:HIS63
|
4.5
|
30.1
|
1.0
|
|
CG
|
D:HIS92
|
4.6
|
42.3
|
1.0
|
|
Iron binding site 5 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 5 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe155
b:26.6
occ:1.00
|
FE
|
E:HEM155
|
0.0
|
26.6
|
1.0
|
|
NC
|
E:HEM155
|
1.9
|
16.9
|
1.0
|
|
ND
|
E:HEM155
|
1.9
|
25.5
|
1.0
|
|
NA
|
E:HEM155
|
1.9
|
26.1
|
1.0
|
|
NB
|
E:HEM155
|
2.1
|
22.8
|
1.0
|
|
NE2
|
E:HIS87
|
2.3
|
23.2
|
1.0
|
|
C4C
|
E:HEM155
|
2.9
|
16.4
|
1.0
|
|
C1D
|
E:HEM155
|
2.9
|
22.5
|
1.0
|
|
C1C
|
E:HEM155
|
3.0
|
13.9
|
1.0
|
|
C4A
|
E:HEM155
|
3.0
|
30.9
|
1.0
|
|
C4D
|
E:HEM155
|
3.0
|
24.6
|
1.0
|
|
C1A
|
E:HEM155
|
3.1
|
27.7
|
1.0
|
|
C1B
|
E:HEM155
|
3.1
|
22.9
|
1.0
|
|
C4B
|
E:HEM155
|
3.1
|
15.9
|
1.0
|
|
CD2
|
E:HIS87
|
3.2
|
24.8
|
1.0
|
|
CE1
|
E:HIS87
|
3.2
|
25.7
|
1.0
|
|
CHD
|
E:HEM155
|
3.3
|
17.7
|
1.0
|
|
CHB
|
E:HEM155
|
3.4
|
28.1
|
1.0
|
|
CHC
|
E:HEM155
|
3.5
|
15.7
|
1.0
|
|
CHA
|
E:HEM155
|
3.5
|
24.1
|
1.0
|
|
C2D
|
E:HEM155
|
4.1
|
24.6
|
1.0
|
|
C3C
|
E:HEM155
|
4.1
|
13.7
|
1.0
|
|
C2C
|
E:HEM155
|
4.2
|
16.7
|
1.0
|
|
C3D
|
E:HEM155
|
4.2
|
23.8
|
1.0
|
|
C3A
|
E:HEM155
|
4.3
|
33.0
|
1.0
|
|
C2A
|
E:HEM155
|
4.3
|
33.5
|
1.0
|
|
C2B
|
E:HEM155
|
4.3
|
20.6
|
1.0
|
|
C3B
|
E:HEM155
|
4.3
|
19.8
|
1.0
|
|
NE2
|
E:HIS58
|
4.3
|
44.8
|
1.0
|
|
ND1
|
E:HIS87
|
4.4
|
18.6
|
1.0
|
|
CG
|
E:HIS87
|
4.4
|
22.4
|
1.0
|
|
CE1
|
E:HIS58
|
4.9
|
42.3
|
1.0
|
|
Iron binding site 6 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 6 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe156
b:36.9
occ:1.00
|
FE
|
F:HEM156
|
0.0
|
36.9
|
1.0
|
|
ND
|
F:HEM156
|
1.9
|
26.8
|
1.0
|
|
NB
|
F:HEM156
|
2.0
|
30.3
|
1.0
|
|
NA
|
F:HEM156
|
2.1
|
38.1
|
1.0
|
|
NC
|
F:HEM156
|
2.1
|
31.4
|
1.0
|
|
NE2
|
F:HIS92
|
2.3
|
31.2
|
1.0
|
|
C1D
|
F:HEM156
|
3.0
|
26.9
|
1.0
|
|
C4D
|
F:HEM156
|
3.0
|
28.8
|
1.0
|
|
CE1
|
F:HIS92
|
3.0
|
30.1
|
1.0
|
|
C1B
|
F:HEM156
|
3.0
|
27.6
|
1.0
|
|
C4B
|
F:HEM156
|
3.1
|
27.7
|
1.0
|
|
C4A
|
F:HEM156
|
3.1
|
37.0
|
1.0
|
|
C4C
|
F:HEM156
|
3.1
|
26.4
|
1.0
|
|
C1C
|
F:HEM156
|
3.2
|
28.1
|
1.0
|
|
C1A
|
F:HEM156
|
3.2
|
36.9
|
1.0
|
|
CHB
|
F:HEM156
|
3.4
|
34.2
|
1.0
|
|
CHD
|
F:HEM156
|
3.4
|
27.2
|
1.0
|
|
CD2
|
F:HIS92
|
3.4
|
31.6
|
1.0
|
|
CHA
|
F:HEM156
|
3.5
|
32.5
|
1.0
|
|
CHC
|
F:HEM156
|
3.5
|
26.2
|
1.0
|
|
C2D
|
F:HEM156
|
4.2
|
26.2
|
1.0
|
|
C3D
|
F:HEM156
|
4.2
|
30.1
|
1.0
|
|
ND1
|
F:HIS92
|
4.2
|
27.5
|
1.0
|
|
C2B
|
F:HEM156
|
4.2
|
22.6
|
1.0
|
|
C3B
|
F:HEM156
|
4.3
|
23.9
|
1.0
|
|
NE2
|
F:HIS63
|
4.3
|
18.7
|
1.0
|
|
C3A
|
F:HEM156
|
4.3
|
36.4
|
1.0
|
|
C3C
|
F:HEM156
|
4.4
|
26.9
|
1.0
|
|
C2C
|
F:HEM156
|
4.4
|
27.6
|
1.0
|
|
CG2
|
F:VAL67
|
4.4
|
20.8
|
1.0
|
|
C2A
|
F:HEM156
|
4.4
|
35.8
|
1.0
|
|
CG
|
F:HIS92
|
4.5
|
32.0
|
1.0
|
|
CE1
|
F:HIS63
|
4.6
|
15.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 7 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe157
b:15.6
occ:1.00
|
FE
|
G:HEM157
|
0.0
|
15.6
|
1.0
|
|
NA
|
G:HEM157
|
1.9
|
17.2
|
1.0
|
|
ND
|
G:HEM157
|
1.9
|
17.9
|
1.0
|
|
NC
|
G:HEM157
|
2.0
|
14.4
|
1.0
|
|
NB
|
G:HEM157
|
2.1
|
11.6
|
1.0
|
|
NE2
|
G:HIS87
|
2.3
|
9.6
|
1.0
|
|
C1D
|
G:HEM157
|
2.9
|
15.3
|
1.0
|
|
C4C
|
G:HEM157
|
3.0
|
10.2
|
1.0
|
|
C4A
|
G:HEM157
|
3.0
|
17.2
|
1.0
|
|
C1A
|
G:HEM157
|
3.0
|
18.5
|
1.0
|
|
C4D
|
G:HEM157
|
3.0
|
22.2
|
1.0
|
|
C1B
|
G:HEM157
|
3.1
|
7.3
|
1.0
|
|
C1C
|
G:HEM157
|
3.1
|
4.3
|
1.0
|
|
C4B
|
G:HEM157
|
3.1
|
13.4
|
1.0
|
|
CE1
|
G:HIS87
|
3.3
|
12.8
|
1.0
|
|
CD2
|
G:HIS87
|
3.3
|
13.6
|
1.0
|
|
CHD
|
G:HEM157
|
3.3
|
10.4
|
1.0
|
|
CHB
|
G:HEM157
|
3.4
|
16.9
|
1.0
|
|
CHA
|
G:HEM157
|
3.5
|
16.2
|
1.0
|
|
CHC
|
G:HEM157
|
3.5
|
8.0
|
1.0
|
|
C2D
|
G:HEM157
|
4.2
|
19.4
|
1.0
|
|
C3C
|
G:HEM157
|
4.2
|
8.1
|
1.0
|
|
C3A
|
G:HEM157
|
4.2
|
21.3
|
1.0
|
|
C2A
|
G:HEM157
|
4.2
|
25.6
|
1.0
|
|
C3D
|
G:HEM157
|
4.2
|
20.9
|
1.0
|
|
C2C
|
G:HEM157
|
4.3
|
6.7
|
1.0
|
|
C2B
|
G:HEM157
|
4.3
|
7.8
|
1.0
|
|
NE2
|
G:HIS58
|
4.3
|
34.6
|
1.0
|
|
C3B
|
G:HEM157
|
4.3
|
13.4
|
1.0
|
|
ND1
|
G:HIS87
|
4.4
|
12.4
|
1.0
|
|
CG
|
G:HIS87
|
4.4
|
17.8
|
1.0
|
|
CE1
|
G:HIS58
|
4.8
|
35.3
|
1.0
|
|
Iron binding site 8 out
of 8 in 1hv4
Go back to
Iron Binding Sites List in 1hv4
Iron binding site 8 out
of 8 in the Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure Analysis of Bar-Head Goose Hemoglobin (Deoxy Form) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe158
b:34.5
occ:1.00
|
FE
|
H:HEM158
|
0.0
|
34.5
|
1.0
|
|
ND
|
H:HEM158
|
1.9
|
43.2
|
1.0
|
|
NB
|
H:HEM158
|
2.0
|
40.4
|
1.0
|
|
NA
|
H:HEM158
|
2.0
|
46.5
|
1.0
|
|
NC
|
H:HEM158
|
2.2
|
40.3
|
1.0
|
|
NE2
|
H:HIS92
|
2.5
|
39.1
|
1.0
|
|
C1B
|
H:HEM158
|
3.0
|
38.8
|
1.0
|
|
C4D
|
H:HEM158
|
3.0
|
44.7
|
1.0
|
|
C4A
|
H:HEM158
|
3.0
|
44.7
|
1.0
|
|
C1D
|
H:HEM158
|
3.0
|
41.2
|
1.0
|
|
C4B
|
H:HEM158
|
3.1
|
34.6
|
1.0
|
|
C1A
|
H:HEM158
|
3.1
|
47.9
|
1.0
|
|
CE1
|
H:HIS92
|
3.2
|
38.4
|
1.0
|
|
C4C
|
H:HEM158
|
3.2
|
35.9
|
1.0
|
|
C1C
|
H:HEM158
|
3.2
|
38.9
|
1.0
|
|
CHB
|
H:HEM158
|
3.4
|
43.3
|
1.0
|
|
CHA
|
H:HEM158
|
3.4
|
45.1
|
1.0
|
|
CHD
|
H:HEM158
|
3.5
|
39.5
|
1.0
|
|
CHC
|
H:HEM158
|
3.6
|
36.1
|
1.0
|
|
CD2
|
H:HIS92
|
3.6
|
42.4
|
1.0
|
|
NE2
|
H:HIS63
|
4.1
|
34.0
|
1.0
|
|
CG2
|
H:VAL67
|
4.2
|
25.9
|
1.0
|
|
C3D
|
H:HEM158
|
4.2
|
43.0
|
1.0
|
|
C2D
|
H:HEM158
|
4.2
|
38.6
|
1.0
|
|
C2B
|
H:HEM158
|
4.2
|
32.9
|
1.0
|
|
C3A
|
H:HEM158
|
4.3
|
44.2
|
1.0
|
|
C3B
|
H:HEM158
|
4.3
|
32.7
|
1.0
|
|
C2A
|
H:HEM158
|
4.4
|
47.8
|
1.0
|
|
ND1
|
H:HIS92
|
4.4
|
39.4
|
1.0
|
|
C3C
|
H:HEM158
|
4.4
|
35.1
|
1.0
|
|
C2C
|
H:HEM158
|
4.4
|
36.9
|
1.0
|
|
CE1
|
H:HIS63
|
4.5
|
30.7
|
1.0
|
|
CG
|
H:HIS92
|
4.6
|
39.7
|
1.0
|
|
Reference:
Y.Liang,
Z.Hua,
X.Liang,
Q.Xu,
G.Lu.
The Crystal Structure of Bar-Headed Goose Hemoglobin in Deoxy Form: the Allosteric Mechanism of A Hemoglobin Species with High Oxygen Affinity. J.Mol.Biol. V. 313 123 2001.
ISSN: ISSN 0022-2836
PubMed: 11601851
DOI: 10.1006/JMBI.2001.5028
Page generated: Sun Dec 13 14:18:07 2020
|
