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Iron in PDB 1isu: The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution

Protein crystallography data

The structure of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution, PDB code: 1isu was solved by H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.700, 52.600, 27.600, 90.00, 90.80, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution (pdb code 1isu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution, PDB code: 1isu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1isu

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Iron binding site 1 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe63

b:7.3
occ:1.00
FE1 A:SF463 0.0 7.3 1.0
S2 A:SF463 2.2 6.7 1.0
SG A:CYS22 2.3 6.6 1.0
S4 A:SF463 2.3 7.2 1.0
S3 A:SF463 2.3 6.9 1.0
FE4 A:SF463 2.7 7.5 1.0
FE3 A:SF463 2.7 7.4 1.0
FE2 A:SF463 2.8 7.3 1.0
CB A:CYS22 3.2 8.7 1.0
CA A:CYS22 3.7 4.1 1.0
S1 A:SF463 3.9 6.8 1.0
CG2 A:ILE49 4.3 7.9 1.0
N A:CYS22 4.3 4.4 1.0
N A:CYS55 4.5 6.8 1.0
CA A:TYR54 4.6 7.2 1.0
C A:TYR54 4.7 8.9 1.0
SG A:CYS55 4.7 7.9 1.0
SG A:CYS40 4.8 8.5 1.0
SG A:CYS25 4.8 7.0 1.0
N A:TYR54 4.8 6.2 1.0
CB A:CYS25 4.8 7.3 1.0
C A:CYS22 4.9 7.4 1.0
CE2 A:TYR12 5.0 15.6 1.0
CB A:CYS55 5.0 7.1 1.0

Iron binding site 2 out of 8 in 1isu

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Iron binding site 2 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe63

b:7.3
occ:1.00
FE2 A:SF463 0.0 7.3 1.0
S1 A:SF463 2.2 6.8 1.0
S4 A:SF463 2.3 7.2 1.0
SG A:CYS25 2.3 7.0 1.0
S3 A:SF463 2.3 6.9 1.0
FE4 A:SF463 2.7 7.5 1.0
FE3 A:SF463 2.7 7.4 1.0
FE1 A:SF463 2.8 7.3 1.0
CB A:CYS25 3.2 7.3 1.0
S2 A:SF463 3.9 6.7 1.0
CB A:GLN27 4.1 6.7 1.0
CA A:PHE58 4.1 4.5 1.0
N A:PHE58 4.5 4.2 1.0
SG A:CYS40 4.5 8.5 1.0
CA A:CYS25 4.7 7.3 1.0
CG A:GLN27 4.7 9.4 1.0
N A:PHE28 4.7 7.3 1.0
O A:ALA57 4.7 8.3 1.0
CA A:CYS22 4.7 4.1 1.0
N A:GLN27 4.7 5.2 1.0
SG A:CYS55 4.8 7.9 1.0
C A:ALA57 4.8 8.3 1.0
SG A:CYS22 4.8 6.6 1.0
CB A:PHE58 4.8 7.0 1.0
CA A:GLN27 4.8 6.1 1.0
CD1 A:PHE58 4.8 7.2 1.0
C A:GLN27 4.9 6.7 1.0

Iron binding site 3 out of 8 in 1isu

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Iron binding site 3 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe63

b:7.4
occ:1.00
FE3 A:SF463 0.0 7.4 1.0
SG A:CYS40 2.1 8.5 1.0
S2 A:SF463 2.3 6.7 1.0
S4 A:SF463 2.3 7.2 1.0
S1 A:SF463 2.3 6.8 1.0
FE4 A:SF463 2.7 7.5 1.0
FE1 A:SF463 2.7 7.3 1.0
FE2 A:SF463 2.7 7.3 1.0
CB A:CYS40 3.1 10.4 1.0
S3 A:SF463 3.9 6.9 1.0
SG A:CYS55 4.3 7.9 1.0
CB A:GLN27 4.3 6.7 1.0
CA A:CYS40 4.3 7.2 1.0
CD1 A:ILE43 4.7 19.4 1.0
SG A:CYS22 4.8 6.6 1.0
SG A:CYS25 4.8 7.0 1.0
CG2 A:ILE49 4.9 7.9 1.0
C A:GLN27 4.9 6.7 1.0
O A:GLN27 4.9 7.6 1.0
CG1 A:ILE43 4.9 13.4 1.0
N A:PHE28 5.0 7.3 1.0
CB A:VAL42 5.0 12.0 1.0

Iron binding site 4 out of 8 in 1isu

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Iron binding site 4 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe63

b:7.5
occ:1.00
FE4 A:SF463 0.0 7.5 1.0
SG A:CYS55 2.2 7.9 1.0
S1 A:SF463 2.3 6.8 1.0
S2 A:SF463 2.3 6.7 1.0
S3 A:SF463 2.3 6.9 1.0
FE3 A:SF463 2.7 7.4 1.0
FE1 A:SF463 2.7 7.3 1.0
FE2 A:SF463 2.7 7.3 1.0
CB A:CYS55 3.1 7.1 1.0
N A:CYS55 3.6 6.8 1.0
CA A:CYS55 3.6 5.5 1.0
S4 A:SF463 3.8 7.2 1.0
C A:CYS55 4.1 8.0 1.0
O A:CYS55 4.2 6.4 1.0
N A:PHE58 4.3 4.2 1.0
C A:TYR54 4.4 8.9 1.0
SG A:CYS40 4.4 8.5 1.0
C A:ALA57 4.6 8.3 1.0
N A:ALA57 4.6 5.7 1.0
CB A:ALA57 4.6 7.8 1.0
CA A:PHE58 4.7 4.5 1.0
SG A:CYS22 4.7 6.6 1.0
CA A:ALA57 4.8 4.8 1.0
SG A:CYS25 4.9 7.0 1.0

Iron binding site 5 out of 8 in 1isu

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Iron binding site 5 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe63

b:11.3
occ:1.00
FE1 B:SF463 0.0 11.3 1.0
S2 B:SF463 2.1 9.6 1.0
SG B:CYS22 2.2 10.2 1.0
S3 B:SF463 2.3 10.9 1.0
S4 B:SF463 2.3 10.3 1.0
FE4 B:SF463 2.7 10.7 1.0
FE2 B:SF463 2.8 11.4 1.0
FE3 B:SF463 2.8 10.4 1.0
CB B:CYS22 3.2 12.8 1.0
CA B:CYS22 3.7 10.5 1.0
S1 B:SF463 3.9 9.1 1.0
CG2 B:ILE49 4.2 11.7 1.0
N B:CYS22 4.3 11.4 1.0
CA B:TYR54 4.6 13.2 1.0
N B:CYS55 4.7 11.9 1.0
N B:TYR54 4.8 13.3 1.0
SG B:CYS25 4.8 12.0 1.0
C B:TYR54 4.8 13.9 1.0
CE1 B:TYR12 4.8 15.3 1.0
CB B:CYS25 4.8 9.9 1.0
SG B:CYS55 4.9 9.3 1.0
SG B:CYS40 4.9 9.6 1.0
C B:CYS22 4.9 11.6 1.0
CD1 B:TYR12 4.9 14.4 1.0
C B:GLY53 5.0 14.2 1.0
O B:GLY53 5.0 11.6 1.0

Iron binding site 6 out of 8 in 1isu

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Iron binding site 6 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe63

b:11.4
occ:1.00
FE2 B:SF463 0.0 11.4 1.0
S1 B:SF463 2.2 9.1 1.0
S3 B:SF463 2.3 10.9 1.0
SG B:CYS25 2.3 12.0 1.0
S4 B:SF463 2.3 10.3 1.0
FE4 B:SF463 2.7 10.7 1.0
FE3 B:SF463 2.8 10.4 1.0
FE1 B:SF463 2.8 11.3 1.0
CB B:CYS25 3.2 9.9 1.0
S2 B:SF463 3.8 9.6 1.0
CA B:PHE58 4.1 11.6 1.0
CB B:GLN27 4.1 12.2 1.0
NE2 B:GLN27 4.4 11.9 1.0
N B:PHE58 4.4 13.2 1.0
CB B:PHE58 4.6 16.2 1.0
SG B:CYS40 4.6 9.6 1.0
CD1 B:PHE58 4.6 18.6 1.0
N B:GLN27 4.7 9.2 1.0
CA B:CYS25 4.7 11.6 1.0
SG B:CYS22 4.7 10.2 1.0
CA B:CYS22 4.7 10.5 1.0
N B:PHE28 4.7 11.1 1.0
CA B:GLN27 4.7 12.6 1.0
SG B:CYS55 4.8 9.3 1.0
C B:ALA57 4.8 11.3 1.0
C B:GLN27 4.9 13.8 1.0
CB B:CYS22 4.9 12.8 1.0
O B:ALA57 5.0 10.6 1.0

Iron binding site 7 out of 8 in 1isu

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Iron binding site 7 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe63

b:10.4
occ:1.00
FE3 B:SF463 0.0 10.4 1.0
SG B:CYS40 2.2 9.6 1.0
S2 B:SF463 2.3 9.6 1.0
S4 B:SF463 2.3 10.3 1.0
S1 B:SF463 2.4 9.1 1.0
FE4 B:SF463 2.7 10.7 1.0
FE2 B:SF463 2.8 11.4 1.0
FE1 B:SF463 2.8 11.3 1.0
CB B:CYS40 3.2 9.9 1.0
S3 B:SF463 3.9 10.9 1.0
CB B:GLN27 4.2 12.2 1.0
CA B:CYS40 4.3 9.2 1.0
SG B:CYS55 4.6 9.3 1.0
CD1 B:ILE43 4.6 10.2 1.0
CG2 B:VAL42 4.7 11.8 1.0
SG B:CYS22 4.8 10.2 1.0
SG B:CYS25 4.8 12.0 1.0
C B:GLN27 4.8 13.8 1.0
CG2 B:ILE49 4.8 11.7 1.0
CG1 B:ILE43 4.9 12.0 1.0
O B:GLN27 4.9 9.8 1.0
N B:PHE28 5.0 11.1 1.0

Iron binding site 8 out of 8 in 1isu

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Iron binding site 8 out of 8 in the The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe63

b:10.7
occ:1.00
FE4 B:SF463 0.0 10.7 1.0
S2 B:SF463 2.2 9.6 1.0
S3 B:SF463 2.3 10.9 1.0
SG B:CYS55 2.3 9.3 1.0
S1 B:SF463 2.4 9.1 1.0
FE1 B:SF463 2.7 11.3 1.0
FE3 B:SF463 2.7 10.4 1.0
FE2 B:SF463 2.7 11.4 1.0
CB B:CYS55 3.1 11.7 1.0
N B:CYS55 3.7 11.9 1.0
CA B:CYS55 3.8 13.2 1.0
S4 B:SF463 3.9 10.3 1.0
C B:CYS55 4.2 9.2 1.0
N B:PHE58 4.3 13.2 1.0
O B:CYS55 4.3 12.3 1.0
C B:TYR54 4.5 13.9 1.0
SG B:CYS40 4.6 9.6 1.0
N B:ALA57 4.6 7.4 1.0
C B:ALA57 4.7 11.3 1.0
CB B:ALA57 4.7 11.8 1.0
SG B:CYS22 4.7 10.2 1.0
CA B:PHE58 4.7 11.6 1.0
CA B:ALA57 4.8 8.5 1.0
SG B:CYS25 4.9 12.0 1.0

Reference:

I.Rayment, G.Wesenberg, T.E.Meyer, M.A.Cusanovich, H.M.Holden. Three-Dimensional Structure of the High-Potential Iron-Sulfur Protein Isolated From the Purple Phototrophic Bacterium Rhodocyclus Tenuis Determined and Refined at 1.5 A Resolution. J.Mol.Biol. V. 228 672 1992.
ISSN: ISSN 0022-2836
PubMed: 1453470
DOI: 10.1016/0022-2836(92)90849-F
Page generated: Sun Dec 13 14:18:50 2020

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