Iron in PDB 1it1: Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F

The binding sites of Iron atom in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F (pdb code 1it1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F, PDB code: 1it1:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:0.0 occ:1.00 FE A:HEC201 0.0 0.0 1.0 ND A:HEC201 1.9 0.0 1.0 NC A:HEC201 1.9 0.0 1.0 NA A:HEC201 1.9 0.0 1.0 NB A:HEC201 1.9 0.0 1.0 NE2 A:HIS34 2.2 0.0 1.0 NE2 A:HIS22 2.2 0.0 1.0 C4C A:HEC201 3.0 0.0 1.0 C1D A:HEC201 3.0 0.0 1.0 C4D A:HEC201 3.0 0.0 1.0 C1A A:HEC201 3.0 0.0 1.0 C1B A:HEC201 3.0 0.0 1.0 C4B A:HEC201 3.0 0.0 1.0 C1C A:HEC201 3.0 0.0 1.0 C4A A:HEC201 3.0 0.0 1.0 CD2 A:HIS34 3.1 0.0 1.0 CD2 A:HIS22 3.2 0.0 1.0 HD2 A:HIS34 3.2 0.0 1.0 CE1 A:HIS22 3.2 0.0 1.0 CE1 A:HIS34 3.3 0.0 1.0 CHD A:HEC201 3.3 0.0 1.0 CHB A:HEC201 3.4 0.0 1.0 CHA A:HEC201 3.4 0.0 1.0 CHC A:HEC201 3.4 0.0 1.0 HD2 A:HIS22 3.4 0.0 1.0 HE1 A:HIS22 3.5 0.0 1.0 HE1 A:HIS34 3.6 0.0 1.0 HE2 A:PHE20 3.6 0.0 1.0 HBB1 A:HEC202 4.1 0.0 1.0 HD2 A:PRO5 4.2 0.0 1.0 C3C A:HEC201 4.2 0.0 1.0 C3D A:HEC201 4.2 0.0 1.0 C2D A:HEC201 4.2 0.0 1.0 C2A A:HEC201 4.2 0.0 1.0 C2C A:HEC201 4.2 0.0 1.0 C3A A:HEC201 4.2 0.0 1.0 C2B A:HEC201 4.2 0.0 1.0 C3B A:HEC201 4.2 0.0 1.0 CG A:HIS34 4.3 0.0 1.0 ND1 A:HIS34 4.4 0.0 1.0 ND1 A:HIS22 4.4 0.0 1.0 CG A:HIS22 4.4 0.0 1.0 HHD A:HEC201 4.4 0.0 1.0 HHC A:HEC201 4.5 0.0 1.0 HHB A:HEC201 4.5 0.0 1.0 HHA A:HEC201 4.5 0.0 1.0 CE2 A:PHE20 4.5 0.0 1.0 HBB3 A:HEC202 4.5 0.0 1.0 HD3 A:PRO5 4.7 0.0 1.0 HD2 A:PHE20 4.7 0.0 1.0 CBB A:HEC202 4.8 0.0 1.0 CD A:PRO5 4.9 0.0 1.0

Iron binding site 2 out of 4 in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:0.0 occ:1.00 FE A:HEC202 0.0 0.0 1.0 NB A:HEC202 1.9 0.0 1.0 NA A:HEC202 1.9 0.0 1.0 NC A:HEC202 1.9 0.0 1.0 ND A:HEC202 1.9 0.0 1.0 NE2 A:HIS35 2.2 0.0 1.0 NE2 A:HIS52 2.2 0.0 1.0 C4C A:HEC202 3.0 0.0 1.0 C4A A:HEC202 3.0 0.0 1.0 C1B A:HEC202 3.0 0.0 1.0 C1A A:HEC202 3.0 0.0 1.0 C4D A:HEC202 3.0 0.0 1.0 C4B A:HEC202 3.0 0.0 1.0 C1C A:HEC202 3.0 0.0 1.0 C1D A:HEC202 3.0 0.0 1.0 CE1 A:HIS35 3.1 0.0 1.0 HE1 A:HIS35 3.2 0.0 1.0 CD2 A:HIS52 3.2 0.0 1.0 CE1 A:HIS52 3.2 0.0 1.0 CD2 A:HIS35 3.3 0.0 1.0 CHB A:HEC202 3.3 0.0 1.0 CHD A:HEC202 3.4 0.0 1.0 CHC A:HEC202 3.4 0.0 1.0 CHA A:HEC202 3.4 0.0 1.0 HD2 A:HIS52 3.4 0.0 1.0 HE1 A:HIS52 3.5 0.0 1.0 HD2 A:HIS35 3.7 0.0 1.0 C2A A:HEC202 4.2 0.0 1.0 C3A A:HEC202 4.2 0.0 1.0 C3C A:HEC202 4.2 0.0 1.0 C2B A:HEC202 4.2 0.0 1.0 C3D A:HEC202 4.2 0.0 1.0 C3B A:HEC202 4.2 0.0 1.0 C2C A:HEC202 4.2 0.0 1.0 C2D A:HEC202 4.2 0.0 1.0 ND1 A:HIS35 4.3 0.0 1.0 ND1 A:HIS52 4.4 0.0 1.0 CG A:HIS52 4.4 0.0 1.0 HD2 A:PHE76 4.4 0.0 1.0 HHA A:HEC202 4.4 0.0 1.0 HHB A:HEC202 4.4 0.0 1.0 HHD A:HEC202 4.4 0.0 1.0 CG A:HIS35 4.4 0.0 1.0 HHC A:HEC202 4.4 0.0 1.0 HB3 A:ALA68 4.6 0.0 1.0 O A:CYS33 4.7 0.0 1.0 HG22 A:VAL37 4.8 0.0 1.0 HB2 A:ALA68 5.0 0.0 1.0

Iron binding site 3 out of 4 in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:0.0 occ:1.00 FE A:HEC203 0.0 0.0 1.0 NC A:HEC203 1.9 0.0 1.0 NA A:HEC203 1.9 0.0 1.0 NB A:HEC203 2.0 0.0 1.0 ND A:HEC203 2.0 0.0 1.0 NE2 A:HIS25 2.2 0.0 1.0 NE2 A:HIS83 2.3 0.0 1.0 C1C A:HEC203 3.0 0.0 1.0 C4A A:HEC203 3.0 0.0 1.0 C4B A:HEC203 3.0 0.0 1.0 C1A A:HEC203 3.0 0.0 1.0 C4C A:HEC203 3.0 0.0 1.0 C1B A:HEC203 3.0 0.0 1.0 C4D A:HEC203 3.0 0.0 1.0 C1D A:HEC203 3.0 0.0 1.0 CD2 A:HIS25 3.2 0.0 1.0 CE1 A:HIS83 3.3 0.0 1.0 CD2 A:HIS83 3.3 0.0 1.0 CE1 A:HIS25 3.3 0.0 1.0 HD2 A:HIS25 3.3 0.0 1.0 CHB A:HEC203 3.4 0.0 1.0 CHA A:HEC203 3.4 0.0 1.0 CHC A:HEC203 3.4 0.0 1.0 HE1 A:PHE20 3.4 0.0 1.0 CHD A:HEC203 3.4 0.0 1.0 HE1 A:HIS83 3.5 0.0 1.0 HD2 A:HIS83 3.5 0.0 1.0 HE1 A:HIS25 3.5 0.0 1.0 C3C A:HEC203 4.2 0.0 1.0 C2C A:HEC203 4.2 0.0 1.0 C2A A:HEC203 4.2 0.0 1.0 C3A A:HEC203 4.2 0.0 1.0 C3B A:HEC203 4.2 0.0 1.0 C3D A:HEC203 4.2 0.0 1.0 C2B A:HEC203 4.2 0.0 1.0 C2D A:HEC203 4.2 0.0 1.0 CG A:HIS25 4.4 0.0 1.0 CE1 A:PHE20 4.4 0.0 1.0 HBC2 A:HEC204 4.4 0.0 1.0 ND1 A:HIS25 4.4 0.0 1.0 HHB A:HEC203 4.4 0.0 1.0 ND1 A:HIS83 4.4 0.0 1.0 HHC A:HEC203 4.4 0.0 1.0 HHA A:HEC203 4.5 0.0 1.0 CG A:HIS83 4.5 0.0 1.0 HHD A:HEC203 4.5 0.0 1.0 HBC2 A:HEC201 4.5 0.0 1.0 HD22 A:LEU97 4.5 0.0 1.0 HD1 A:PHE20 4.5 0.0 1.0 HB A:THR24 4.8 0.0 1.0 HA A:CYS79 4.9 0.0 1.0 CD1 A:PHE20 4.9 0.0 1.0

Iron binding site 4 out of 4 in the Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Solution Structures of Ferrocytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:0.0 occ:1.00 FE A:HEC204 0.0 0.0 1.0 NB A:HEC204 1.9 0.0 1.0 NA A:HEC204 1.9 0.0 1.0 NC A:HEC204 1.9 0.0 1.0 ND A:HEC204 1.9 0.0 1.0 NE2 A:HIS106 2.2 0.0 1.0 NE2 A:HIS70 2.2 0.0 1.0 C4B A:HEC204 3.0 0.0 1.0 C1B A:HEC204 3.0 0.0 1.0 C1A A:HEC204 3.0 0.0 1.0 C4A A:HEC204 3.0 0.0 1.0 C4C A:HEC204 3.0 0.0 1.0 C4D A:HEC204 3.0 0.0 1.0 C1C A:HEC204 3.0 0.0 1.0 C1D A:HEC204 3.0 0.0 1.0 CE1 A:HIS106 3.1 0.0 1.0 CD2 A:HIS70 3.1 0.0 1.0 HD2 A:HIS70 3.2 0.0 1.0 CD2 A:HIS106 3.2 0.0 1.0 HE1 A:HIS106 3.3 0.0 1.0 CE1 A:HIS70 3.3 0.0 1.0 CHB A:HEC204 3.3 0.0 1.0 CHC A:HEC204 3.4 0.0 1.0 CHA A:HEC204 3.4 0.0 1.0 CHD A:HEC204 3.4 0.0 1.0 HD2 A:HIS106 3.5 0.0 1.0 HE1 A:HIS70 3.6 0.0 1.0 C3B A:HEC204 4.2 0.0 1.0 C2B A:HEC204 4.2 0.0 1.0 C3C A:HEC204 4.2 0.0 1.0 C2A A:HEC204 4.2 0.0 1.0 C3D A:HEC204 4.2 0.0 1.0 C3A A:HEC204 4.2 0.0 1.0 C2C A:HEC204 4.2 0.0 1.0 C2D A:HEC204 4.2 0.0 1.0 ND1 A:HIS106 4.3 0.0 1.0 CG A:HIS70 4.3 0.0 1.0 CG A:HIS106 4.4 0.0 1.0 ND1 A:HIS70 4.4 0.0 1.0 HHC A:HEC204 4.4 0.0 1.0 HHB A:HEC204 4.4 0.0 1.0 HE21 A:GLN16 4.5 0.0 1.0 HHD A:HEC204 4.5 0.0 1.0 HHA A:HEC204 4.5 0.0 1.0 HG21 A:VAL80 4.7 0.0 1.0 HB3 A:CYS100 4.7 0.0 1.0 HA A:CYS100 4.8 0.0 1.0 HE22 A:GLN16 4.8 0.0 1.0 NE2 A:GLN16 4.9 0.0 1.0 HG22 A:VAL18 5.0 0.0 1.0

E.Harada, Y.Fukuoka, T.Ohmura, A.Fukunishi, G.Kawai, T.Fujiwara, H.Akutsu. Redox-Coupled Conformational Alternations in Cytochrome C(3) From D. Vulgaris Miyazaki F on the Basis of Its Reduced Solution Structure. J.Mol.Biol. V. 319 767 2002.
ISSN: ISSN 0022-2836
PubMed: 12054869
DOI: 10.1016/S0022-2836(02)00367-4