Iron in PDB 1iue: Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
Protein crystallography data
The structure of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum, PDB code: 1iue
was solved by
Y.Kimata-Ariga,
G.Kurisu,
T.Hase,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.36 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.000,
50.573,
52.480,
90.00,
115.53,
90.00
|
R / Rfree (%)
|
18.4 /
22.1
|
Other elements in 1iue:
The structure of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
(pdb code 1iue). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum, PDB code: 1iue:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 1iue
Go back to
Iron Binding Sites List in 1iue
Iron binding site 1 out
of 4 in the Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1099
b:7.0
occ:1.00
|
FE1
|
A:FES1099
|
0.0
|
7.0
|
1.0
|
S1
|
A:FES1099
|
2.2
|
6.3
|
1.0
|
S2
|
A:FES1099
|
2.2
|
5.9
|
1.0
|
SG
|
A:CYS47
|
2.3
|
5.6
|
1.0
|
SG
|
A:CYS77
|
2.4
|
5.6
|
1.0
|
FE2
|
A:FES1099
|
2.7
|
7.2
|
1.0
|
CB
|
A:CYS77
|
3.2
|
4.2
|
1.0
|
CB
|
A:CYS47
|
3.3
|
3.3
|
1.0
|
N
|
A:GLY42
|
4.2
|
5.9
|
1.0
|
N
|
A:CYS77
|
4.2
|
4.8
|
1.0
|
N
|
A:CYS47
|
4.3
|
4.6
|
1.0
|
CB
|
A:LEU75
|
4.3
|
3.6
|
1.0
|
CA
|
A:CYS77
|
4.3
|
4.6
|
1.0
|
N
|
A:ARG40
|
4.4
|
6.7
|
1.0
|
CA
|
A:CYS47
|
4.4
|
3.8
|
1.0
|
CA
|
A:ARG40
|
4.4
|
6.2
|
1.0
|
SG
|
A:CYS39
|
4.5
|
7.4
|
1.0
|
CA
|
A:GLY42
|
4.5
|
7.6
|
1.0
|
SG
|
A:CYS44
|
4.6
|
5.9
|
1.0
|
N
|
A:GLY41
|
4.7
|
7.5
|
1.0
|
O
|
A:CYS44
|
4.8
|
7.2
|
1.0
|
C
|
A:ARG40
|
4.8
|
7.7
|
1.0
|
CD1
|
A:LEU75
|
4.9
|
4.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 1iue
Go back to
Iron Binding Sites List in 1iue
Iron binding site 2 out
of 4 in the Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1099
b:7.2
occ:1.00
|
FE2
|
A:FES1099
|
0.0
|
7.2
|
1.0
|
S1
|
A:FES1099
|
2.2
|
6.3
|
1.0
|
S2
|
A:FES1099
|
2.2
|
5.9
|
1.0
|
SG
|
A:CYS44
|
2.3
|
5.9
|
1.0
|
SG
|
A:CYS39
|
2.4
|
7.4
|
1.0
|
FE1
|
A:FES1099
|
2.7
|
7.0
|
1.0
|
CB
|
A:CYS44
|
3.4
|
4.5
|
1.0
|
CB
|
A:CYS39
|
3.5
|
8.7
|
1.0
|
N
|
A:CYS44
|
3.6
|
7.1
|
1.0
|
N
|
A:ARG40
|
3.6
|
6.7
|
1.0
|
N
|
A:CYS39
|
3.7
|
7.2
|
1.0
|
CA
|
A:CYS44
|
3.8
|
6.0
|
1.0
|
CA
|
A:CYS39
|
4.0
|
8.0
|
1.0
|
C
|
A:CYS44
|
4.0
|
6.9
|
1.0
|
O
|
A:CYS44
|
4.0
|
7.2
|
1.0
|
C
|
A:CYS39
|
4.2
|
7.4
|
1.0
|
OG
|
A:SER38
|
4.2
|
11.2
|
1.0
|
N
|
A:GLY42
|
4.3
|
5.9
|
1.0
|
N
|
A:GLY41
|
4.4
|
7.5
|
1.0
|
SG
|
A:CYS77
|
4.4
|
5.6
|
1.0
|
N
|
A:SER43
|
4.5
|
8.2
|
1.0
|
CA
|
A:ARG40
|
4.5
|
6.2
|
1.0
|
SG
|
A:CYS47
|
4.6
|
5.6
|
1.0
|
N
|
A:SER45
|
4.6
|
6.0
|
1.0
|
N
|
A:SER38
|
4.7
|
7.5
|
1.0
|
C
|
A:SER38
|
4.7
|
7.8
|
1.0
|
N
|
A:THR46
|
4.7
|
5.6
|
1.0
|
C
|
A:SER43
|
4.7
|
6.8
|
1.0
|
CA
|
A:GLY42
|
4.8
|
7.6
|
1.0
|
C
|
A:GLY42
|
4.9
|
7.3
|
1.0
|
C
|
A:ARG40
|
4.9
|
7.7
|
1.0
|
CB
|
A:THR46
|
4.9
|
6.2
|
1.0
|
N
|
A:CYS47
|
4.9
|
4.6
|
1.0
|
OG1
|
A:THR46
|
5.0
|
6.5
|
1.0
|
|
Iron binding site 3 out
of 4 in 1iue
Go back to
Iron Binding Sites List in 1iue
Iron binding site 3 out
of 4 in the Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1100
b:7.0
occ:1.00
|
FE1
|
B:FES1100
|
0.0
|
7.0
|
1.0
|
S1
|
B:FES1100
|
2.2
|
7.0
|
1.0
|
S2
|
B:FES1100
|
2.2
|
6.9
|
1.0
|
SG
|
B:CYS47
|
2.3
|
6.7
|
1.0
|
SG
|
B:CYS77
|
2.4
|
7.6
|
1.0
|
FE2
|
B:FES1100
|
2.7
|
7.7
|
1.0
|
CB
|
B:CYS77
|
3.3
|
6.1
|
1.0
|
CB
|
B:CYS47
|
3.4
|
4.2
|
1.0
|
N
|
B:GLY42
|
4.2
|
6.6
|
1.0
|
N
|
B:CYS47
|
4.2
|
5.6
|
1.0
|
N
|
B:CYS77
|
4.3
|
6.4
|
1.0
|
CB
|
B:LEU75
|
4.3
|
4.4
|
1.0
|
CA
|
B:CYS77
|
4.4
|
5.4
|
1.0
|
N
|
B:ARG40
|
4.4
|
5.3
|
1.0
|
CA
|
B:CYS47
|
4.4
|
4.8
|
1.0
|
CA
|
B:GLY42
|
4.4
|
7.8
|
1.0
|
CA
|
B:ARG40
|
4.4
|
6.0
|
1.0
|
SG
|
B:CYS39
|
4.4
|
8.3
|
1.0
|
SG
|
B:CYS44
|
4.6
|
6.3
|
1.0
|
N
|
B:GLY41
|
4.8
|
8.4
|
1.0
|
C
|
B:ARG40
|
4.8
|
7.4
|
1.0
|
O
|
B:CYS44
|
4.9
|
8.2
|
1.0
|
CD1
|
B:LEU75
|
4.9
|
3.3
|
1.0
|
|
Iron binding site 4 out
of 4 in 1iue
Go back to
Iron Binding Sites List in 1iue
Iron binding site 4 out
of 4 in the Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure Analysis of Ferredoxin From Plasmodium Falciparum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1100
b:7.7
occ:1.00
|
FE2
|
B:FES1100
|
0.0
|
7.7
|
1.0
|
S1
|
B:FES1100
|
2.2
|
7.0
|
1.0
|
S2
|
B:FES1100
|
2.2
|
6.9
|
1.0
|
SG
|
B:CYS44
|
2.3
|
6.3
|
1.0
|
SG
|
B:CYS39
|
2.4
|
8.3
|
1.0
|
FE1
|
B:FES1100
|
2.7
|
7.0
|
1.0
|
CB
|
B:CYS44
|
3.4
|
7.7
|
1.0
|
CB
|
B:CYS39
|
3.5
|
8.8
|
1.0
|
N
|
B:CYS44
|
3.6
|
7.2
|
1.0
|
N
|
B:ARG40
|
3.6
|
5.3
|
1.0
|
N
|
B:CYS39
|
3.7
|
8.4
|
1.0
|
CA
|
B:CYS44
|
3.8
|
7.9
|
1.0
|
C
|
B:CYS44
|
4.0
|
7.7
|
1.0
|
CA
|
B:CYS39
|
4.0
|
6.8
|
1.0
|
O
|
B:CYS44
|
4.1
|
8.2
|
1.0
|
C
|
B:CYS39
|
4.2
|
7.1
|
1.0
|
N
|
B:GLY42
|
4.3
|
6.6
|
1.0
|
OG
|
B:SER38
|
4.3
|
8.6
|
1.0
|
SG
|
B:CYS77
|
4.4
|
7.6
|
1.0
|
N
|
B:SER43
|
4.4
|
8.4
|
1.0
|
N
|
B:GLY41
|
4.4
|
8.4
|
1.0
|
CA
|
B:ARG40
|
4.5
|
6.0
|
1.0
|
N
|
B:SER45
|
4.6
|
7.1
|
1.0
|
SG
|
B:CYS47
|
4.6
|
6.7
|
1.0
|
N
|
B:SER38
|
4.7
|
6.0
|
1.0
|
N
|
B:THR46
|
4.7
|
5.4
|
1.0
|
CA
|
B:GLY42
|
4.7
|
7.8
|
1.0
|
C
|
B:SER43
|
4.7
|
7.7
|
1.0
|
C
|
B:SER38
|
4.8
|
7.4
|
1.0
|
C
|
B:GLY42
|
4.9
|
7.7
|
1.0
|
N
|
B:CYS47
|
4.9
|
5.6
|
1.0
|
CB
|
B:THR46
|
4.9
|
7.0
|
1.0
|
C
|
B:ARG40
|
5.0
|
7.4
|
1.0
|
OG1
|
B:THR46
|
5.0
|
6.9
|
1.0
|
|
Reference:
Y.Kimata-Ariga,
G.Kurisu,
T.Hase.
Redox Power Generator of A Nonphotosynthetic Plastid in Malaria Parasite To Be Published.
Page generated: Sat Aug 3 08:15:13 2024
|