Atomistry » Iron » PDB 1iro-1j3y » 1izl
Atomistry »
  Iron »
    PDB 1iro-1j3y »
      1izl »

Iron in PDB 1izl: Crystal Structure of Photosystem II

Protein crystallography data

The structure of Crystal Structure of Photosystem II, PDB code: 1izl was solved by N.Kamiya, J.-R.Shen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 3.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 129.377, 225.192, 308.672, 90.00, 90.00, 90.00
R / Rfree (%) 53 / n/a

Other elements in 1izl:

The structure of Crystal Structure of Photosystem II also contains other interesting chemical elements:

Magnesium (Mg) 72 atoms
Manganese (Mn) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Photosystem II (pdb code 1izl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Photosystem II, PDB code: 1izl:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 1 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe353

b:46.9
occ:1.00
CE1 D:HIS214 3.5 46.9 1.0
ND1 D:HIS214 4.3 46.9 1.0
NE2 D:HIS214 4.4 46.9 1.0

Iron binding site 2 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 2 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe84

b:46.9
occ:1.00
FE E:HEM84 0.0 46.9 1.0
ND E:HEM84 2.0 46.9 1.0
NA E:HEM84 2.0 46.9 1.0
NC E:HEM84 2.1 46.9 1.0
NB E:HEM84 2.1 46.9 1.0
C4D E:HEM84 3.0 46.9 1.0
C4A E:HEM84 3.0 46.9 1.0
C1D E:HEM84 3.0 46.9 1.0
C1A E:HEM84 3.1 46.9 1.0
C1B E:HEM84 3.1 46.9 1.0
C1C E:HEM84 3.1 46.9 1.0
C4C E:HEM84 3.1 46.9 1.0
C4B E:HEM84 3.2 46.9 1.0
CHA E:HEM84 3.4 46.9 1.0
CHB E:HEM84 3.4 46.9 1.0
CHD E:HEM84 3.4 46.9 1.0
CHC E:HEM84 3.5 46.9 1.0
C2D E:HEM84 4.2 46.9 1.0
C3D E:HEM84 4.3 46.9 1.0
C3A E:HEM84 4.3 46.9 1.0
C2B E:HEM84 4.3 46.9 1.0
C2A E:HEM84 4.4 46.9 1.0
C3B E:HEM84 4.4 46.9 1.0
C2C E:HEM84 4.5 46.9 1.0
C3C E:HEM84 4.5 46.9 1.0

Iron binding site 3 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 3 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe138

b:46.9
occ:1.00
FE V:HEM138 0.0 46.9 1.0
ND V:HEM138 2.0 46.9 1.0
NA V:HEM138 2.0 46.9 1.0
NC V:HEM138 2.1 46.9 1.0
NB V:HEM138 2.1 46.9 1.0
NE2 V:HIS92 2.6 46.9 1.0
NE2 V:HIS41 2.8 46.9 1.0
C4D V:HEM138 3.0 46.9 1.0
C4A V:HEM138 3.0 46.9 1.0
C1D V:HEM138 3.0 46.9 1.0
C1A V:HEM138 3.1 46.9 1.0
CE1 V:HIS92 3.1 46.9 1.0
C1B V:HEM138 3.1 46.9 1.0
C1C V:HEM138 3.1 46.9 1.0
C4C V:HEM138 3.1 46.9 1.0
C4B V:HEM138 3.2 46.9 1.0
CHA V:HEM138 3.4 46.9 1.0
CHB V:HEM138 3.4 46.9 1.0
CD2 V:HIS92 3.4 46.9 1.0
CHD V:HEM138 3.4 46.9 1.0
CHC V:HEM138 3.5 46.9 1.0
CE1 V:HIS41 3.5 46.9 1.0
CD2 V:HIS41 3.9 46.9 1.0
ND1 V:HIS92 4.0 46.9 1.0
C2D V:HEM138 4.2 46.9 1.0
CG V:HIS92 4.2 46.9 1.0
C3D V:HEM138 4.3 46.9 1.0
C3A V:HEM138 4.3 46.9 1.0
C2B V:HEM138 4.3 46.9 1.0
C2A V:HEM138 4.4 46.9 1.0
C3B V:HEM138 4.4 46.9 1.0
C2C V:HEM138 4.5 46.9 1.0
C3C V:HEM138 4.5 46.9 1.0
ND1 V:HIS41 4.7 46.9 1.0
CG V:HIS41 4.9 46.9 1.0

Iron binding site 4 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 4 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe353

b:46.9
occ:1.00
CE1 N:HIS214 3.5 46.9 1.0
ND1 N:HIS214 4.3 46.9 1.0
NE2 N:HIS214 4.4 46.9 1.0

Iron binding site 5 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 5 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe92

b:46.9
occ:1.00
FE P:HEM92 0.0 46.9 1.0
ND P:HEM92 2.0 46.9 1.0
NA P:HEM92 2.0 46.9 1.0
NC P:HEM92 2.1 46.9 1.0
NB P:HEM92 2.1 46.9 1.0
C4D P:HEM92 3.0 46.9 1.0
C4A P:HEM92 3.0 46.9 1.0
C1D P:HEM92 3.0 46.9 1.0
C1A P:HEM92 3.1 46.9 1.0
C1B P:HEM92 3.1 46.9 1.0
C1C P:HEM92 3.1 46.9 1.0
C4C P:HEM92 3.1 46.9 1.0
C4B P:HEM92 3.2 46.9 1.0
CHA P:HEM92 3.4 46.9 1.0
CHB P:HEM92 3.4 46.9 1.0
CHD P:HEM92 3.4 46.9 1.0
CHC P:HEM92 3.5 46.9 1.0
C2D P:HEM92 4.2 46.9 1.0
C3D P:HEM92 4.3 46.9 1.0
C3A P:HEM92 4.3 46.9 1.0
C2B P:HEM92 4.3 46.9 1.0
C2A P:HEM92 4.4 46.9 1.0
C3B P:HEM92 4.4 46.9 1.0
C2C P:HEM92 4.5 46.9 1.0
C3C P:HEM92 4.5 46.9 1.0

Iron binding site 6 out of 6 in 1izl

Go back to Iron Binding Sites List in 1izl
Iron binding site 6 out of 6 in the Crystal Structure of Photosystem II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Photosystem II within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe138

b:46.9
occ:1.00
FE 0:HEM138 0.0 46.9 1.0
ND 0:HEM138 2.0 46.9 1.0
NA 0:HEM138 2.0 46.9 1.0
NC 0:HEM138 2.1 46.9 1.0
NB 0:HEM138 2.1 46.9 1.0
NE2 0:HIS92 2.6 46.9 1.0
NE2 0:HIS41 2.8 46.9 1.0
C4D 0:HEM138 3.0 46.9 1.0
C4A 0:HEM138 3.0 46.9 1.0
C1D 0:HEM138 3.0 46.9 1.0
C1A 0:HEM138 3.1 46.9 1.0
CE1 0:HIS92 3.1 46.9 1.0
C1B 0:HEM138 3.1 46.9 1.0
C1C 0:HEM138 3.1 46.9 1.0
C4C 0:HEM138 3.1 46.9 1.0
C4B 0:HEM138 3.2 46.9 1.0
CHB 0:HEM138 3.4 46.9 1.0
CHA 0:HEM138 3.4 46.9 1.0
CE1 0:HIS41 3.4 46.9 1.0
CD2 0:HIS92 3.4 46.9 1.0
CHD 0:HEM138 3.4 46.9 1.0
CHC 0:HEM138 3.5 46.9 1.0
CD2 0:HIS41 3.9 46.9 1.0
ND1 0:HIS92 4.0 46.9 1.0
C2D 0:HEM138 4.2 46.9 1.0
CG 0:HIS92 4.2 46.9 1.0
C3D 0:HEM138 4.3 46.9 1.0
C3A 0:HEM138 4.3 46.9 1.0
C2B 0:HEM138 4.3 46.9 1.0
C2A 0:HEM138 4.4 46.9 1.0
C3B 0:HEM138 4.4 46.9 1.0
C2C 0:HEM138 4.5 46.9 1.0
C3C 0:HEM138 4.5 46.9 1.0
ND1 0:HIS41 4.6 46.9 1.0
CG 0:HIS41 4.9 46.9 1.0

Reference:

N.Kamiya, J.-R.Shen. Crystal Structure of Oxygen-Evolving Photosystem II From Thermosynechococcus Vulcanus at 3.7-A Resolution Proc.Natl.Acad.Sci.Usa V. 100 98 2003.
ISSN: ISSN 0027-8424
PubMed: 12518057
DOI: 10.1073/PNAS.0135651100
Page generated: Sun Dec 13 14:19:08 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy