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Iron in PDB 1j2c: Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster

Enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster

All present enzymatic activity of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster:
1.14.99.3;

Protein crystallography data

The structure of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster, PDB code: 1j2c was solved by M.Sugishima, H.Sakamoto, M.Noguchi, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.80 / 2.40
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.400, 65.400, 121.300, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 23.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster (pdb code 1j2c). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster, PDB code: 1j2c:

Iron binding site 1 out of 1 in 1j2c

Go back to Iron Binding Sites List in 1j2c
Iron binding site 1 out of 1 in the Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin Ixalpha-Iron Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1300

b:41.3
occ:1.00
 ND A:BLA300 2.0 37.9 1.0
NC A:BLA300 2.1 39.8 1.0
NA A:BLA300 2.2 41.5 1.0
NB A:BLA300 2.2 43.7 1.0
NE2 A:HIS25 2.4 35.5 1.0
C1D A:BLA300 3.0 35.6 1.0
C4D A:BLA300 3.0 35.7 1.0
C4C A:BLA300 3.1 37.4 1.0
C1B A:BLA300 3.1 45.0 1.0
C4B A:BLA300 3.2 45.6 1.0
C1C A:BLA300 3.2 39.6 1.0
C1A A:BLA300 3.2 40.6 1.0
C4A A:BLA300 3.2 42.4 1.0
CHD A:BLA300 3.4 35.0 1.0
CE1 A:HIS25 3.4 36.2 1.0
CD2 A:HIS25 3.4 35.7 1.0
CHA A:BLA300 3.4 37.2 1.0
OB A:BLA300 3.4 42.6 1.0
OC A:BLA300 3.5 39.7 1.0
CHB A:BLA300 3.5 43.3 1.0
C3B A:BLA300 4.2 45.9 1.0
C3D A:BLA300 4.2 35.4 1.0
C2D A:BLA300 4.2 34.3 1.0
C2B A:BLA300 4.3 45.1 1.0
C3C A:BLA300 4.4 39.1 1.0
C2C A:BLA300 4.4 39.9 1.0
CA A:GLY139 4.4 21.4 1.0
C3A A:BLA300 4.5 43.4 1.0
C2A A:BLA300 4.5 41.8 1.0
ND1 A:HIS25 4.5 36.8 1.0
CG A:HIS25 4.6 34.3 1.0
CB A:SER142 4.6 35.1 1.0
O A:GLY139 4.9 22.1 1.0

Reference:

M.Sugishima, H.Sakamoto, Y.Higashimoto, M.Noguchi, K.Fukuyama. Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin-Iron Chelate: Conformational Change of the Distal Helix During the Heme Cleavage Reaction. J.Biol.Chem. V. 278 32352 2003.
ISSN: ISSN 0021-9258
PubMed: 12794075
DOI: 10.1074/JBC.M303682200
Page generated: Sun Dec 13 14:19:11 2020

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