Iron in PDB 1jaf: Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution

The structure of Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution, PDB code: 1jaf was solved by M.Archer, L.Banci, E.Dikaya, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.40 / 2.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	70.180, 70.180, 126.850, 90.00, 90.00, 120.00
R / Rfree (%)	17.9 / 22.1

The binding sites of Iron atom in the Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution (pdb code 1jaf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution, PDB code: 1jaf:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe130 b:25.8 occ:1.00 FE A:HEM130 0.0 25.8 1.0 NA A:HEM130 1.9 19.4 1.0 NC A:HEM130 1.9 20.7 1.0 ND A:HEM130 1.9 22.6 1.0 NB A:HEM130 1.9 22.9 1.0 NE2 A:HIS123 2.0 28.9 1.0 C4A A:HEM130 3.0 19.2 1.0 C1C A:HEM130 3.0 20.1 1.0 C1D A:HEM130 3.0 24.2 1.0 C1B A:HEM130 3.0 19.5 1.0 C4B A:HEM130 3.0 20.2 1.0 CE1 A:HIS123 3.0 31.0 1.0 C1A A:HEM130 3.0 22.0 1.0 C4C A:HEM130 3.0 24.2 1.0 C4D A:HEM130 3.0 22.7 1.0 CD2 A:HIS123 3.0 24.5 1.0 CHC A:HEM130 3.4 18.7 1.0 CHB A:HEM130 3.4 16.7 1.0 CHD A:HEM130 3.4 23.2 1.0 CHA A:HEM130 3.4 20.6 1.0 CD1 A:PHE16 3.8 17.7 1.0 CE1 A:PHE16 3.9 22.6 1.0 CG A:PHE16 4.0 16.0 1.0 CG A:HIS123 4.2 30.2 1.0 CZ A:PHE16 4.2 19.8 1.0 ND1 A:HIS123 4.2 31.2 1.0 C3A A:HEM130 4.2 18.8 1.0 C2D A:HEM130 4.2 21.6 1.0 C2B A:HEM130 4.2 16.6 1.0 C2A A:HEM130 4.3 21.2 1.0 C3D A:HEM130 4.3 22.3 1.0 C2C A:HEM130 4.3 21.4 1.0 C3B A:HEM130 4.3 20.3 1.0 CD2 A:PHE16 4.3 19.3 1.0 C3C A:HEM130 4.3 22.6 1.0 CE2 A:PHE16 4.4 23.1 1.0 CB A:PHE16 4.7 17.5 1.0 CD A:LYS127 4.9 33.9 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus at 2.5 Angstoms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe130 b:22.3 occ:1.00 FE B:HEM130 0.0 22.3 1.0 NE2 B:HIS123 1.9 22.6 1.0 NA B:HEM130 1.9 12.2 1.0 NB B:HEM130 1.9 16.5 1.0 ND B:HEM130 1.9 15.4 1.0 NC B:HEM130 2.0 13.1 1.0 CE1 B:HIS123 2.8 25.6 1.0 C4A B:HEM130 2.9 14.4 1.0 CD2 B:HIS123 3.0 23.3 1.0 C1A B:HEM130 3.0 17.1 1.0 C1B B:HEM130 3.0 19.2 1.0 C4D B:HEM130 3.0 14.0 1.0 C1D B:HEM130 3.0 16.1 1.0 C4B B:HEM130 3.0 17.7 1.0 C1C B:HEM130 3.0 13.5 1.0 C4C B:HEM130 3.0 16.9 1.0 CHB B:HEM130 3.3 16.5 1.0 CHC B:HEM130 3.4 13.2 1.0 CHA B:HEM130 3.4 11.9 1.0 CHD B:HEM130 3.4 16.4 1.0 CD1 B:PHE16 3.7 16.5 1.0 CE1 B:PHE16 3.8 18.4 1.0 CG B:PHE16 3.9 17.4 1.0 ND1 B:HIS123 4.0 31.9 1.0 CG B:HIS123 4.1 28.9 1.0 CZ B:PHE16 4.1 14.5 1.0 C3A B:HEM130 4.2 15.3 1.0 C2D B:HEM130 4.2 14.8 1.0 C2A B:HEM130 4.2 19.5 1.0 C3D B:HEM130 4.2 15.8 1.0 CD2 B:PHE16 4.2 16.9 1.0 C2B B:HEM130 4.3 18.2 1.0 C3B B:HEM130 4.3 19.4 1.0 C2C B:HEM130 4.3 15.5 1.0 C3C B:HEM130 4.3 17.1 1.0 CE2 B:PHE16 4.3 14.5 1.0 CB B:PHE16 4.6 16.8 1.0 CD B:LYS127 4.8 30.0 1.0

M.Archer, L.Banci, E.Dikaya, M.J.Romao. Crystal Structure of Cytochrome C' From Rhodocyclus Gelatinosus and Comparison with Other Cytochromes C' J.Biol.Inorg.Chem. V. 2 611 1997.
ISSN: ISSN 0949-8257