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Iron in PDB 1jdl: Structure of Cytochrome C2 From Rhodospirillum Centenum

Protein crystallography data

The structure of Structure of Cytochrome C2 From Rhodospirillum Centenum, PDB code: 1jdl was solved by A.Camara-Artigas, J.C.Williams, J.P.Allen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 29.700, 59.900, 65.400, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Cytochrome C2 From Rhodospirillum Centenum (pdb code 1jdl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Cytochrome C2 From Rhodospirillum Centenum, PDB code: 1jdl:

Iron binding site 1 out of 1 in 1jdl

Go back to Iron Binding Sites List in 1jdl
Iron binding site 1 out of 1 in the Structure of Cytochrome C2 From Rhodospirillum Centenum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Cytochrome C2 From Rhodospirillum Centenum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:14.0
occ:1.00
FE A:HEM500 0.0 14.0 1.0
NB A:HEM500 1.9 14.5 1.0
NC A:HEM500 2.0 14.3 1.0
ND A:HEM500 2.0 13.7 1.0
NA A:HEM500 2.0 13.7 1.0
NE2 A:HIS19 2.1 13.9 1.0
SD A:MET98 2.3 15.6 1.0
C4B A:HEM500 3.0 14.9 1.0
C4C A:HEM500 3.0 16.1 1.0
C1B A:HEM500 3.0 14.3 1.0
CD2 A:HIS19 3.0 15.1 1.0
C4A A:HEM500 3.0 14.8 1.0
C1C A:HEM500 3.0 15.3 1.0
C4D A:HEM500 3.0 13.2 1.0
C1D A:HEM500 3.0 13.5 1.0
C1A A:HEM500 3.0 14.2 1.0
CE1 A:HIS19 3.1 15.5 1.0
CHC A:HEM500 3.4 16.1 1.0
CHD A:HEM500 3.4 14.6 1.0
CHB A:HEM500 3.4 14.1 1.0
CHA A:HEM500 3.4 13.3 1.0
CG A:MET98 3.4 17.7 1.0
CE A:MET98 3.4 17.3 1.0
CG A:HIS19 4.2 15.8 1.0
C3B A:HEM500 4.2 17.5 1.0
ND1 A:HIS19 4.2 14.1 1.0
C2B A:HEM500 4.2 15.1 1.0
C3C A:HEM500 4.2 17.8 1.0
CB A:MET98 4.3 17.8 1.0
C3A A:HEM500 4.3 12.2 1.0
C2C A:HEM500 4.3 16.8 1.0
C2A A:HEM500 4.3 12.4 1.0
C2D A:HEM500 4.3 13.6 1.0
C3D A:HEM500 4.3 14.7 1.0
OH A:TYR71 4.9 17.3 1.0

Reference:

A.Camara-Artigas, J.C.Williams, J.P.Allen. Structure of Cytochrome C2 From Rhodospirillum Centenum. Acta Crystallogr.,Sect.D V. 57 1498 2001.
ISSN: ISSN 0907-4449
PubMed: 11679712
DOI: 10.1107/S0907444901010423
Page generated: Wed Jul 16 16:30:07 2025

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