Iron in PDB 1jm1: Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius

The structure of Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius, PDB code: 1jm1 was solved by H.Boenisch, C.L.Schmidt, G.Schaefer, R.Ladenstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.11
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	80.252, 80.252, 75.624, 90.00, 90.00, 120.00
R / Rfree (%)	10.6 / 12.5

The structure of Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Iron atom in the Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius (pdb code 1jm1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius, PDB code: 1jm1:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:11.4 occ:1.00 FE1 A:FES501 0.0 11.4 1.0 S2 A:FES501 2.3 11.8 1.0 S1 A:FES501 2.3 12.3 1.0 SG A:CYS170 2.3 11.8 1.0 SG A:CYS140 2.3 11.2 1.0 FE2 A:FES501 2.7 11.9 1.0 HB3 A:CYS170 3.1 13.8 1.0 CB A:CYS170 3.1 11.5 1.0 HB3 A:HIS142 3.2 14.8 1.0 HB3 A:CYS140 3.2 13.0 1.0 CB A:CYS140 3.2 10.8 1.0 HB2 A:CYS170 3.3 13.8 1.0 HB2 A:CYS140 3.3 13.0 1.0 HB2 A:CYS172 3.3 14.2 0.8 HB2 A:CYS145 3.3 14.0 1.0 HB3 A:CYS172 3.4 22.7 0.2 H A:HIS173 3.7 15.1 1.0 HB2 A:SER175 3.8 14.1 1.0 H A:LEU143 3.8 13.7 1.0 HB2 A:CYS172 4.0 22.7 0.2 H A:CYS145 4.1 12.8 1.0 CB A:HIS142 4.1 12.3 1.0 H A:CYS172 4.1 15.0 1.0 CB A:CYS172 4.2 18.9 0.2 HD21 A:LEU147 4.3 18.0 1.0 CB A:CYS172 4.3 11.8 0.8 CB A:CYS145 4.3 11.7 1.0 H A:SER175 4.3 14.2 1.0 H A:HIS142 4.4 13.7 1.0 HB2 A:HIS142 4.4 14.8 1.0 ND1 A:HIS142 4.4 12.3 1.0 OG A:SER175 4.5 12.4 1.0 HH A:TYR177 4.5 16.9 1.0 ND1 A:HIS173 4.5 12.4 1.0 N A:HIS173 4.5 12.6 1.0 CB A:SER175 4.6 11.7 1.0 CA A:CYS170 4.6 11.5 1.0 N A:LEU143 4.6 11.4 1.0 HD22 A:LEU147 4.7 18.0 1.0 CA A:CYS140 4.7 10.1 1.0 HB3 A:CYS172 4.7 14.2 0.8 HB3 A:CYS145 4.7 14.0 1.0 CG A:HIS142 4.8 12.4 1.0 N A:CYS145 4.8 10.6 1.0 N A:CYS172 4.8 12.5 1.0 HB2 A:HIS173 4.8 15.8 1.0 H A:GLY174 4.9 15.3 1.0 H A:GLY144 4.9 13.1 1.0 CD2 A:LEU147 4.9 12.0 1.0 HA A:CYS170 4.9 13.8 1.0 HE1 A:TYR177 4.9 13.3 1.0 CA A:CYS172 5.0 13.2 1.0 C A:CYS170 5.0 11.9 1.0

Iron binding site 2 out of 2 in the Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Soluble Domain of the Rieske Protein II (Soxf) From Sulfolobus Acidocaldarius within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:11.9 occ:1.00 FE2 A:FES501 0.0 11.9 1.0 ND1 A:HIS173 2.1 12.4 1.0 ND1 A:HIS142 2.1 12.3 1.0 S2 A:FES501 2.3 11.8 1.0 S1 A:FES501 2.3 12.3 1.0 FE1 A:FES501 2.7 11.4 1.0 HB3 A:HIS142 2.8 14.8 1.0 HB2 A:HIS173 2.9 15.8 1.0 HB3 A:CYS172 2.9 22.7 0.2 CE1 A:HIS173 3.1 12.4 1.0 CE1 A:HIS142 3.1 13.3 1.0 CG A:HIS142 3.1 12.4 1.0 CG A:HIS173 3.1 12.6 1.0 HE1 A:HIS173 3.2 14.9 1.0 HE1 A:HIS142 3.3 15.9 1.0 HB2 A:CYS172 3.3 14.2 0.8 HB2 A:LEU143 3.4 15.8 1.0 H A:HIS173 3.4 15.1 1.0 CB A:HIS142 3.4 12.3 1.0 CB A:HIS173 3.4 13.2 1.0 H A:LEU143 3.5 13.7 1.0 N A:HIS173 3.7 12.6 1.0 HB3 A:LEU143 3.9 15.8 1.0 CB A:CYS172 3.9 18.9 0.2 HB3 A:CYS172 3.9 14.2 0.8 HB2 A:HIS142 4.0 14.8 1.0 N A:LEU143 4.0 11.4 1.0 HG2 A:PRO189 4.0 17.3 1.0 CA A:HIS173 4.1 13.2 1.0 CB A:CYS172 4.1 11.8 0.8 CB A:LEU143 4.1 13.1 1.0 NE2 A:HIS173 4.2 13.1 1.0 NE2 A:HIS142 4.2 14.6 1.0 CD2 A:HIS173 4.2 13.6 1.0 CD2 A:HIS142 4.3 14.3 1.0 HB3 A:HIS173 4.3 15.8 1.0 HB2 A:CYS172 4.3 22.7 0.2 SG A:CYS140 4.4 11.2 1.0 C A:CYS172 4.4 12.6 1.0 CA A:LEU143 4.6 11.5 1.0 CA A:HIS142 4.6 11.8 1.0 SG A:CYS170 4.6 11.8 1.0 C A:HIS142 4.6 11.6 1.0 HG3 A:PRO189 4.6 17.3 1.0 OG A:SER175 4.7 12.4 1.0 H A:SER175 4.7 14.2 1.0 SG A:CYS172 4.8 42.9 0.2 CG A:PRO189 4.8 14.4 1.0 C A:HIS173 4.8 13.4 1.0 CA A:CYS172 4.8 13.2 1.0 HB2 A:CYS145 4.8 14.0 1.0 HA A:HIS173 4.9 15.9 1.0 HB3 A:CYS170 4.9 13.8 1.0 HD23 A:LEU143 4.9 35.6 1.0 H A:CYS145 5.0 12.8 1.0 HE2 A:HIS173 5.0 15.7 1.0

H.Bonisch, C.L.Schmidt, G.Schafer, R.Ladenstein. The Structure of the Soluble Domain of An Archaeal Rieske Iron-Sulfur Protein at 1.1 A Resolution. J.Mol.Biol. V. 319 791 2002.
ISSN: ISSN 0022-2836
PubMed: 12054871
DOI: 10.1016/S0022-2836(02)00323-6