Atomistry » Iron » PDB 1jl6-1k2o » 1jrz
Atomistry »
  Iron »
    PDB 1jl6-1k2o »
      1jrz »

Iron in PDB 1jrz: Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina

Enzymatic activity of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina

All present enzymatic activity of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina:
1.3.99.1;

Protein crystallography data

The structure of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1jrz was solved by C.G.Mowat, R.Moysey, C.S.Miles, D.Leys, M.K.Doherty, P.Taylor, M.D.Walkinshaw, G.A.Reid, S.K.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 78.072, 87.906, 90.163, 90.00, 105.03, 90.00
R / Rfree (%) 17.6 / 25.5

Other elements in 1jrz:

The structure of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina (pdb code 1jrz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1jrz:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 1 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:16.4
occ:1.00
FE A:HEM801 0.0 16.4 1.0
NE2 A:HIS18 2.0 15.7 1.0
NC A:HEM801 2.0 17.8 1.0
NB A:HEM801 2.0 17.3 1.0
NA A:HEM801 2.0 17.1 1.0
ND A:HEM801 2.0 17.6 1.0
NE2 A:HIS75 2.2 19.2 1.0
CE1 A:HIS18 2.9 16.7 1.0
C4B A:HEM801 3.0 16.6 1.0
C1C A:HEM801 3.0 19.9 1.0
C1B A:HEM801 3.0 17.9 1.0
C4D A:HEM801 3.0 17.7 1.0
C1A A:HEM801 3.0 17.1 1.0
C4C A:HEM801 3.1 17.9 1.0
C4A A:HEM801 3.1 16.6 1.0
C1D A:HEM801 3.1 18.1 1.0
CD2 A:HIS18 3.1 14.4 1.0
CD2 A:HIS75 3.1 19.6 1.0
CE1 A:HIS75 3.2 19.4 1.0
CHA A:HEM801 3.3 16.2 1.0
CHC A:HEM801 3.4 18.4 1.0
CHB A:HEM801 3.4 16.9 1.0
CHD A:HEM801 3.4 15.7 1.0
ND1 A:HIS18 4.1 14.5 1.0
CG A:HIS18 4.2 17.4 1.0
C3B A:HEM801 4.2 16.3 1.0
C2C A:HEM801 4.2 19.1 1.0
C3C A:HEM801 4.2 18.0 1.0
C2B A:HEM801 4.2 17.6 1.0
C2A A:HEM801 4.3 18.0 1.0
CG A:HIS75 4.3 20.2 1.0
ND1 A:HIS75 4.3 20.2 1.0
C3D A:HEM801 4.3 17.7 1.0
C3A A:HEM801 4.3 17.9 1.0
C2D A:HEM801 4.3 19.3 1.0

Iron binding site 2 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 2 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe802

b:19.0
occ:1.00
FE A:HEM802 0.0 19.0 1.0
NC A:HEM802 2.0 20.6 1.0
NA A:HEM802 2.0 21.6 1.0
ND A:HEM802 2.0 21.8 1.0
NB A:HEM802 2.0 17.8 1.0
NE2 A:HIS40 2.1 19.6 1.0
NE2 A:HIS8 2.2 16.6 1.0
CE1 A:HIS40 2.9 20.2 1.0
C4B A:HEM802 3.0 18.8 1.0
C4C A:HEM802 3.0 21.8 1.0
C1A A:HEM802 3.0 20.9 1.0
C1D A:HEM802 3.0 22.4 1.0
C1C A:HEM802 3.0 20.4 1.0
C4D A:HEM802 3.0 22.2 1.0
C4A A:HEM802 3.0 21.6 1.0
C1B A:HEM802 3.0 17.9 1.0
CD2 A:HIS8 3.1 17.2 1.0
CD2 A:HIS40 3.2 17.7 1.0
CE1 A:HIS8 3.2 16.2 1.0
CHA A:HEM802 3.3 21.1 1.0
CHC A:HEM802 3.4 20.3 1.0
CHD A:HEM802 3.4 21.3 1.0
CHB A:HEM802 3.4 20.4 1.0
ND1 A:HIS40 4.1 17.8 1.0
CG A:HIS40 4.2 17.8 1.0
C3C A:HEM802 4.2 22.1 1.0
C3B A:HEM802 4.2 17.4 1.0
C2A A:HEM802 4.2 20.2 1.0
C3A A:HEM802 4.2 21.5 1.0
C2C A:HEM802 4.2 19.9 1.0
C2B A:HEM802 4.3 18.5 1.0
CG A:HIS8 4.3 16.6 1.0
C3D A:HEM802 4.3 23.7 1.0
C2D A:HEM802 4.3 23.9 1.0
ND1 A:HIS8 4.3 13.9 1.0

Iron binding site 3 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 3 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe803

b:17.4
occ:1.00
FE A:HEM803 0.0 17.4 1.0
NB A:HEM803 2.0 19.1 1.0
ND A:HEM803 2.0 18.9 1.0
NA A:HEM803 2.0 20.2 1.0
NC A:HEM803 2.0 17.1 1.0
NE2 A:HIS58 2.1 19.5 1.0
NE2 A:HIS72 2.1 17.1 1.0
CE1 A:HIS58 2.9 21.2 1.0
C1B A:HEM803 3.0 19.8 1.0
C4B A:HEM803 3.0 17.3 1.0
C1D A:HEM803 3.0 19.4 1.0
C4D A:HEM803 3.0 20.0 1.0
C1A A:HEM803 3.0 20.1 1.0
C4A A:HEM803 3.1 18.9 1.0
C1C A:HEM803 3.1 17.1 1.0
C4C A:HEM803 3.1 17.3 1.0
CE1 A:HIS72 3.1 15.6 1.0
CD2 A:HIS72 3.1 16.7 1.0
CD2 A:HIS58 3.2 18.7 1.0
CHB A:HEM803 3.4 19.3 1.0
CHD A:HEM803 3.4 17.2 1.0
CHC A:HEM803 3.4 16.9 1.0
CHA A:HEM803 3.4 19.0 1.0
ND1 A:HIS58 4.1 19.1 1.0
C2B A:HEM803 4.2 18.8 1.0
C3B A:HEM803 4.2 17.8 1.0
C3D A:HEM803 4.2 20.2 1.0
C2D A:HEM803 4.2 21.6 1.0
ND1 A:HIS72 4.3 16.1 1.0
C2A A:HEM803 4.3 22.3 1.0
CG A:HIS58 4.3 19.6 1.0
C3A A:HEM803 4.3 20.4 1.0
CG A:HIS72 4.3 16.2 1.0
C3C A:HEM803 4.3 17.7 1.0
C2C A:HEM803 4.3 18.0 1.0
CG1 A:VAL46 4.9 18.1 1.0

Iron binding site 4 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 4 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe804

b:14.9
occ:1.00
FE A:HEM804 0.0 14.9 1.0
ND A:HEM804 2.0 15.2 1.0
NA A:HEM804 2.0 17.2 1.0
NC A:HEM804 2.0 15.8 1.0
NE2 A:HIS61 2.0 13.9 1.0
NB A:HEM804 2.0 16.3 1.0
NE2 A:HIS86 2.1 15.3 1.0
CE1 A:HIS61 3.0 14.0 1.0
C1D A:HEM804 3.0 14.9 1.0
C1B A:HEM804 3.0 17.3 1.0
C4B A:HEM804 3.0 18.1 1.0
C4A A:HEM804 3.0 16.0 1.0
C4D A:HEM804 3.0 16.1 1.0
C4C A:HEM804 3.0 14.8 1.0
C1C A:HEM804 3.1 16.4 1.0
C1A A:HEM804 3.1 15.9 1.0
CD2 A:HIS86 3.1 13.5 1.0
CE1 A:HIS86 3.1 14.9 1.0
CD2 A:HIS61 3.1 13.6 1.0
CHD A:HEM804 3.4 16.3 1.0
CHC A:HEM804 3.4 16.3 1.0
CHB A:HEM804 3.4 16.4 1.0
CHA A:HEM804 3.4 16.1 1.0
ND1 A:HIS61 4.1 12.8 1.0
ND1 A:HIS86 4.2 14.8 1.0
CG A:HIS61 4.2 13.0 1.0
CG A:HIS86 4.2 14.7 1.0
C2B A:HEM804 4.2 19.8 1.0
C3B A:HEM804 4.3 19.4 1.0
C3A A:HEM804 4.3 17.0 1.0
C2D A:HEM804 4.3 14.5 1.0
C3C A:HEM804 4.3 16.8 1.0
C3D A:HEM804 4.3 16.2 1.0
C2A A:HEM804 4.3 17.0 1.0
C2C A:HEM804 4.3 15.1 1.0

Iron binding site 5 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 5 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe801

b:16.7
occ:1.00
FE B:HEM801 0.0 16.7 1.0
NC B:HEM801 2.0 17.2 1.0
NA B:HEM801 2.0 17.6 1.0
NB B:HEM801 2.0 16.8 1.0
ND B:HEM801 2.0 16.6 1.0
NE2 B:HIS18 2.1 15.3 1.0
NE2 B:HIS75 2.1 20.3 1.0
C4B B:HEM801 3.0 16.5 1.0
CE1 B:HIS18 3.0 15.5 1.0
C1C B:HEM801 3.0 18.8 1.0
C4A B:HEM801 3.0 19.9 1.0
C1B B:HEM801 3.0 19.1 1.0
C4C B:HEM801 3.0 19.2 1.0
C1D B:HEM801 3.0 16.2 1.0
C1A B:HEM801 3.0 20.0 1.0
CE1 B:HIS75 3.1 19.6 1.0
C4D B:HEM801 3.1 16.3 1.0
CD2 B:HIS18 3.1 15.4 1.0
CD2 B:HIS75 3.1 19.3 1.0
CHC B:HEM801 3.3 18.4 1.0
CHD B:HEM801 3.4 15.8 1.0
CHB B:HEM801 3.4 16.9 1.0
CHA B:HEM801 3.4 17.8 1.0
ND1 B:HIS18 4.1 15.5 1.0
ND1 B:HIS75 4.2 18.3 1.0
CG B:HIS18 4.2 16.5 1.0
C3B B:HEM801 4.2 18.4 1.0
C2C B:HEM801 4.2 20.2 1.0
CG B:HIS75 4.2 19.1 1.0
C3C B:HEM801 4.3 18.5 1.0
C3A B:HEM801 4.3 20.0 1.0
C2A B:HEM801 4.3 20.3 1.0
C2B B:HEM801 4.3 19.1 1.0
C3D B:HEM801 4.3 16.4 1.0
C2D B:HEM801 4.3 16.9 1.0
CB B:ALA74 5.0 14.2 1.0

Iron binding site 6 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 6 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:20.0
occ:1.00
FE B:HEM802 0.0 20.0 1.0
NC B:HEM802 2.0 19.8 1.0
NA B:HEM802 2.0 21.8 1.0
ND B:HEM802 2.0 22.9 1.0
NB B:HEM802 2.0 19.8 1.0
NE2 B:HIS8 2.1 22.4 1.0
NE2 B:HIS40 2.2 21.2 1.0
C4C B:HEM802 3.0 20.3 1.0
CD2 B:HIS8 3.0 21.7 1.0
C1D B:HEM802 3.0 23.5 1.0
C1C B:HEM802 3.0 20.2 1.0
C1A B:HEM802 3.0 22.8 1.0
C1B B:HEM802 3.0 20.8 1.0
C4B B:HEM802 3.0 20.6 1.0
C4D B:HEM802 3.0 24.6 1.0
C4A B:HEM802 3.1 21.6 1.0
CE1 B:HIS8 3.1 22.3 1.0
CE1 B:HIS40 3.2 22.4 1.0
CD2 B:HIS40 3.2 20.3 1.0
CHD B:HEM802 3.3 22.2 1.0
CHC B:HEM802 3.4 21.5 1.0
CHA B:HEM802 3.4 25.0 1.0
CHB B:HEM802 3.4 19.7 1.0
CG B:HIS8 4.2 22.3 1.0
C3C B:HEM802 4.2 21.4 1.0
ND1 B:HIS8 4.2 22.1 1.0
C2D B:HEM802 4.2 24.9 1.0
C2C B:HEM802 4.2 20.7 1.0
C3D B:HEM802 4.2 25.6 1.0
C2A B:HEM802 4.3 21.2 1.0
C3B B:HEM802 4.3 22.3 1.0
C3A B:HEM802 4.3 21.2 1.0
ND1 B:HIS40 4.3 20.7 1.0
C2B B:HEM802 4.3 21.9 1.0
CG B:HIS40 4.3 19.1 1.0

Iron binding site 7 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 7 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe803

b:17.3
occ:1.00
FE B:HEM803 0.0 17.3 1.0
NB B:HEM803 2.0 17.7 1.0
ND B:HEM803 2.0 18.9 1.0
NA B:HEM803 2.0 20.5 1.0
NC B:HEM803 2.0 16.9 1.0
NE2 B:HIS72 2.1 16.5 1.0
NE2 B:HIS58 2.2 18.7 1.0
C4B B:HEM803 3.0 17.9 1.0
C1C B:HEM803 3.0 14.6 1.0
C1B B:HEM803 3.0 17.8 1.0
C1A B:HEM803 3.0 21.5 1.0
C4D B:HEM803 3.0 20.5 1.0
C4A B:HEM803 3.0 20.4 1.0
C4C B:HEM803 3.0 15.0 1.0
C1D B:HEM803 3.1 20.0 1.0
CD2 B:HIS72 3.1 15.2 1.0
CE1 B:HIS72 3.1 15.5 1.0
CD2 B:HIS58 3.1 17.8 1.0
CE1 B:HIS58 3.2 18.9 1.0
CHC B:HEM803 3.4 16.6 1.0
CHB B:HEM803 3.4 18.6 1.0
CHD B:HEM803 3.4 18.0 1.0
CHA B:HEM803 3.4 20.8 1.0
ND1 B:HIS72 4.2 14.0 1.0
C3B B:HEM803 4.2 19.2 1.0
C2B B:HEM803 4.2 19.1 1.0
CG B:HIS72 4.2 15.2 1.0
C2A B:HEM803 4.2 23.6 1.0
C3A B:HEM803 4.2 20.5 1.0
C3C B:HEM803 4.3 14.4 1.0
C2C B:HEM803 4.3 13.7 1.0
C3D B:HEM803 4.3 21.9 1.0
C2D B:HEM803 4.3 19.5 1.0
ND1 B:HIS58 4.3 18.2 1.0
CG B:HIS58 4.3 17.8 1.0
CG1 B:VAL46 5.0 10.8 1.0

Iron binding site 8 out of 8 in 1jrz

Go back to Iron Binding Sites List in 1jrz
Iron binding site 8 out of 8 in the Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe804

b:13.9
occ:1.00
FE B:HEM804 0.0 13.9 1.0
NE2 B:HIS86 2.0 12.2 1.0
NC B:HEM804 2.0 15.2 1.0
NA B:HEM804 2.0 15.6 1.0
ND B:HEM804 2.0 14.2 1.0
NB B:HEM804 2.0 14.7 1.0
NE2 B:HIS61 2.1 10.9 1.0
CE1 B:HIS86 2.8 13.7 1.0
C1D B:HEM804 3.0 15.2 1.0
C4C B:HEM804 3.0 14.2 1.0
C1C B:HEM804 3.0 15.5 1.0
CD2 B:HIS61 3.0 9.3 1.0
C4B B:HEM804 3.0 15.0 1.0
CE1 B:HIS61 3.1 11.4 1.0
C1A B:HEM804 3.1 15.2 1.0
C4A B:HEM804 3.1 17.4 1.0
C4D B:HEM804 3.1 14.2 1.0
C1B B:HEM804 3.1 15.7 1.0
CD2 B:HIS86 3.2 12.4 1.0
CHD B:HEM804 3.4 14.8 1.0
CHC B:HEM804 3.4 13.7 1.0
CHB B:HEM804 3.4 15.1 1.0
CHA B:HEM804 3.4 15.1 1.0
ND1 B:HIS86 4.0 12.5 1.0
ND1 B:HIS61 4.2 12.9 1.0
CG B:HIS86 4.2 12.2 1.0
CG B:HIS61 4.2 11.3 1.0
C3C B:HEM804 4.2 16.1 1.0
C2C B:HEM804 4.3 15.7 1.0
C2A B:HEM804 4.3 17.0 1.0
C3B B:HEM804 4.3 14.4 1.0
C2D B:HEM804 4.3 15.5 1.0
C2B B:HEM804 4.3 15.3 1.0
C3D B:HEM804 4.3 14.5 1.0
C3A B:HEM804 4.3 17.5 1.0

Reference:

C.G.Mowat, R.Moysey, C.S.Miles, D.Leys, M.K.Doherty, P.Taylor, M.D.Walkinshaw, G.A.Reid, S.K.Chapman. Kinetic and Crystallographic Analysis of the Key Active Site Acid/Base Arginine in A Soluble Fumarate Reductase. Biochemistry V. 40 12292 2001.
ISSN: ISSN 0006-2960
PubMed: 11591148
DOI: 10.1021/BI011360H
Page generated: Sat Aug 3 08:38:56 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy