Atomistry » Iron » PDB 1lrm-1m6m » 1ly9
Atomistry »
  Iron »
    PDB 1lrm-1m6m »
      1ly9 »

Iron in PDB 1ly9: The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase

Enzymatic activity of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase

All present enzymatic activity of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase:
1.11.1.7;

Protein crystallography data

The structure of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase, PDB code: 1ly9 was solved by K.Houborg, P.Harris, J.F.W.Petersen, P.Rowland, J.-C.N.Poulsen, P.Schneider, J.Vind, S.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.01 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.600, 116.940, 36.800, 90.00, 90.70, 90.00
R / Rfree (%) 17.8 / 21.5

Other elements in 1ly9:

The structure of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase (pdb code 1ly9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase, PDB code: 1ly9:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 1ly9

Go back to Iron Binding Sites List in 1ly9
Iron binding site 1 out of 2 in the The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe344

b:14.6
occ:1.00
FE A:HEM344 0.0 14.6 1.0
ND A:HEM344 1.9 14.7 1.0
NC A:HEM344 2.0 14.3 1.0
NA A:HEM344 2.0 13.6 1.0
NB A:HEM344 2.1 13.1 1.0
NE2 A:HIS183 2.4 14.7 1.0
O A:HOH1011 2.6 14.8 1.0
C1C A:HEM344 3.0 13.7 1.0
C1A A:HEM344 3.0 12.0 1.0
C1D A:HEM344 3.0 13.9 1.0
C4D A:HEM344 3.0 13.4 1.0
C4C A:HEM344 3.0 13.4 1.0
C4A A:HEM344 3.1 9.2 1.0
C4B A:HEM344 3.1 14.1 1.0
CHA A:HEM344 3.2 10.8 1.0
CHC A:HEM344 3.2 14.5 1.0
CD2 A:HIS183 3.2 13.6 1.0
C1B A:HEM344 3.3 10.4 1.0
CHD A:HEM344 3.3 13.4 1.0
CE1 A:HIS183 3.4 9.9 1.0
CHB A:HEM344 3.5 12.7 1.0
C3D A:HEM344 4.2 12.5 1.0
C2D A:HEM344 4.2 14.2 1.0
C2A A:HEM344 4.3 9.5 1.0
C2C A:HEM344 4.3 13.1 1.0
C3A A:HEM344 4.4 10.4 1.0
C3C A:HEM344 4.4 12.7 1.0
CG A:HIS183 4.5 11.9 1.0
C2B A:HEM344 4.5 11.7 1.0
C3B A:HEM344 4.5 12.8 1.0
ND1 A:HIS183 4.5 12.2 1.0
CG A:ARG51 4.9 15.6 1.0

Iron binding site 2 out of 2 in 1ly9

Go back to Iron Binding Sites List in 1ly9
Iron binding site 2 out of 2 in the The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe344

b:14.9
occ:1.00
FE B:HEM344 0.0 14.9 1.0
NB B:HEM344 2.0 13.2 1.0
NC B:HEM344 2.0 12.7 1.0
ND B:HEM344 2.1 11.9 1.0
NA B:HEM344 2.1 12.8 1.0
NE2 B:HIS183 2.2 7.1 1.0
O B:HOH2011 2.5 11.5 1.0
C1A B:HEM344 3.0 11.9 1.0
C1C B:HEM344 3.0 11.4 1.0
C4A B:HEM344 3.0 10.2 1.0
C4D B:HEM344 3.0 11.7 1.0
C4B B:HEM344 3.1 13.2 1.0
C1B B:HEM344 3.1 11.1 1.0
C4C B:HEM344 3.1 11.7 1.0
C1D B:HEM344 3.1 10.9 1.0
CHA B:HEM344 3.2 10.5 1.0
CD2 B:HIS183 3.2 5.8 1.0
CHC B:HEM344 3.2 12.4 1.0
CE1 B:HIS183 3.3 5.9 1.0
CHB B:HEM344 3.4 11.2 1.0
CHD B:HEM344 3.5 11.2 1.0
C2B B:HEM344 4.2 12.1 1.0
C2A B:HEM344 4.3 10.5 1.0
C3D B:HEM344 4.3 11.4 1.0
C2D B:HEM344 4.3 10.9 1.0
C3B B:HEM344 4.3 12.5 1.0
C3A B:HEM344 4.3 11.2 1.0
C2C B:HEM344 4.4 11.1 1.0
ND1 B:HIS183 4.4 8.6 1.0
CG B:HIS183 4.4 9.6 1.0
C3C B:HEM344 4.5 9.5 1.0
O B:HOH2029 5.0 16.1 1.0

Reference:

K.Houborg, P.Harris, J.Petersen, P.Rowland, J.C.Poulsen, P.Schneider, J.Vind, S.Larsen. Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase. Acta Crystallogr.,Sect.D V. 59 989 2003.
ISSN: ISSN 0907-4449
PubMed: 12777760
DOI: 10.1107/S0907444903006772
Page generated: Sun Dec 13 14:22:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy